Reference SNP(refSNP) Cluster Report: rs11568142

Reference SNP(refSNP) Cluster Report: rs11568142

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_001140.3:c.268G>C
NP_001131.3:p.Asp90His
NT_010718.15:g.4146167C>G
XM_001718416.1:c.151G>C
XP_001718468.1:p.Asp51His

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss16339133 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11568142 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Ancestral Allele	Success Rate
ss16339133	PGA-UW-FHCRC\|ALOX15-003847	fwd/B	C/G	tggatctctgtgcagggccccggagccggg	acgaggtcaggttcccttgttaccgctggg	12/17/03	01/23/04	120	Genomic		unknown
ss46533731	RIVM-TOX\|ALOX15-ex2	fwd/	C/G	tggatctctgtgcagggccccggagccggg	acgaggtcaggttcccttgttaccgctggg	07/27/05	07/27/05	126	Genomic	G	unknown
ss76876753	CGM_KYOTO\|719088	rev/	C/G	cccagcggtaacaagggaacctgacctcgt	cccggctccggggccctgcacagagatcca	09/12/07	09/12/07	129	cDNA		unknown

Fasta sequence (Legend)

 CCCGATACGT CTCCTCCTCT CAGAGGCTCC GAGGAAGGGC GTGGGCGCTG GAGGGAGCAG
 GGCTCAGCCG GGTGCCCCTC CCGCCAGGCC CCACCGGGGC TGAGCCTCTT CTGTCGCCCG
 CAGGAGACAG AACTCAAGGT GGAAGTACCG GAGTATCTGG GGCCGCTGCT GTTTGTGAAA
 CTGCGCAAAC GGCACCTCCT TAAGGACGAC GCCTGGTTCT GCAACTGGAT CTCTGTGCAG
 GGCCCCGGAG CCGGG
 S
 ACGAGGTCAG GTTCCCTTGT TACCGCTGGG TGGAGGGCAA CGGCGTCCTG AGCCTGCCTG
 AAGGCACCGG TAAGCGCGGG GCTGAGGGTG TCAGGAGGCC TCTGGGCTGT GTGAGAAGCT
 GGGGGGATGC GCGTGTGGAG AAGAGGGCGC AGGATGGGGG TGCTGGAACC TGGAGCGCCG
 GGGTCTTTGG GGGTGTCGAA GGGGCGGTGG CTGCAGCTGG CACAAAGTGG CTGGAGCCTG
 GGGGAGGGGC GTGAT

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_010718.15 001140

dbSNP Blast Analysis

UniGene Cluster ID
73809

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/G	G/G	HWP	C	G
ss16339133	PGA-AFRICAN-PANEL	African American	48	IG		1.000			1.000

	PGA-EUROPEAN-PANEL	European	46	IG	0.043	0.957	1.000	0.022	0.978

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.021+/-0.100	47	26	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	YES

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Revised: May 25, 2006 1:38 PM .