Reference SNP(refSNP) Cluster Report: rs10919226

Reference SNP(refSNP) Cluster Report: rs10919226

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_002155.3:c.460G>A
NP_002146.2:p.Asp154Asn
NR_024151.1:c.692A>G
NT_004487.18:g.11985263G>A
XR_038244.1:c.634A>G

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss52975229 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10919226 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss18246236	SC_SNP\|SC-CHR1_NA07340-200402.chr1.NT_004668.16_81777	fwd/T	A/G	gcagtgatcaccgtgcccgcctatttcaat	actcgcagcgccaggccaccaaggacgcgg	02/20/04	03/04/04	120	Genomic	unknown
ss19098684	CSHL-HAPMAP\|CSHL-HuDD-200402.chr1.NT_004668.16_81777	fwd/T	A/G	gcagtgatcaccgtgcccgcctatttcaat	actcgcagcgccaggccaccaaggacgcgg	02/20/04	03/04/04	120	Genomic	unknown
ss52975229	EGP_SNPS\|HSPA6-002808	fwd/T	A/G	gcagtgatcaccgtgcccgcctatttcaat	actcgcagcgccaggccaccaaggacgcgg	06/08/06	12/16/06	127	Genomic	unknown
ss84083037	HGSV\|Cor19240_SNV_20070510.chr1_158307963	fwd/T	A/G	gcagtgatcaccgtgcccgcctatttcaat	actcgcagcgccaggccaccaaggacgcgg	11/30/07	12/06/07	130	Genomic	unknown

Fasta sequence (Legend)

 GTGTTCGATG CCAAGCGGCT GATCGGGCGC AAGTTCGCGG ACACCACGGT GCAGTCGGAC
 ATGAAGCACT GGCCCTTCCG GGTGGTGAGC GAGGGCGGCA AGCCCAAGGT GCGCGTATGC
 TACCGCGGGG AGGACAAGAC GTTCTACCCC GAGGAGATCT CGTCCATGGT GCTGAGCAAG
 ATGAAGGAGA CGGCCGAGGC GTACCTGGGC CAGCCCGTGA AGCACGCAGT GATCACCGTG
 CCCGCCTATT TCAAT
 R
 ACTCGCAGCG CCAGGCCACC AAGGACGCGG GGGCCATCGC GGGGCTCAAC GTGTTGCGGA
 TCATCAATGA GCCCACGGCA GCTGCCATCG CCTATGGGCT GGACCGGCGG GGCGCGGGAG
 AGCGCAACGT GCTCATTTTT GACCTGGGTG GGGGCACCTT CGATGTGTCG GTTCTCTCCA
 TTGACGCTGG TGTCTTTGAG GTGAAAGCCA CTGCTGGAGA TACCCACCTG GGAGGAGAGG
 ACTTCGACAA CCGGC

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_004668

dbSNP Blast Analysis

UniGene Cluster ID
3268

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/G	G/G	HWP	A	G
ss52975229	EGP_YORUB-PANEL	Sub-Saharan African	24	IG	0.250	0.750	0.655	0.125	0.875

	EGP_HISP-PANEL	Hispanic	44	IG	0.227	0.773	0.584	0.114	0.886

	EGP_CEPH-PANEL	European	44	IG	0.045	0.955	1.000	0.023	0.977

	EGP_AD-PANEL	African American	30	IG		1.000			1.000

	EGP_ASIAN-PANEL	Asian	48	IG	0.042	0.958	1.000	0.021	0.979

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.100+/-0.200	95	95	0	0

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

YES

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .