Skip to main content
NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs10406202                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/144
Map to Genome Build:107/Weight
Validation Status:byClusterbyFreqwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:unknown
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.0226/113
MAF Source:1000 Genomes
HGVS Names
  • NC_000019.10:g.8978018G>A
  • NC_000019.9:g.9088694G>A
  • NM_024690.2:c.3121C>T
  • NP_078966.2:p.Pro1041Ser
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss14697843 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10406202 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss14697843BCM_SSAHASNP|chr19.NT_011295.10_351496byFreqfwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc11/10/0310/25/06119Genomicunknown
ss74819917AFFY|SNP_M-321862fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc08/09/0708/09/07128Genomicunknown
ss74862070ILLUMINA|ILMN_Human_1M_rs10406202fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc08/28/0708/29/07129Genomicunknown
ss119620633KRIBB_YJKIM|KHS1782880fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc02/04/0902/05/09131Genomicunknown
ss170029621ILLUMINA|Human1M-Duov3_B_rs10406202-127_B_R_1513882341rev/BC/Tggctctatggctgtggcttctaccaacatccaattggaaagggctacattactgaaggaa10/01/0910/01/09132Genomicunknown
ss2280357771000GENOMES|pilot_1_YRI_9845460_chr19_8949694fwd/A/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc04/22/1004/22/10132Genomicunknown
ss482321889ILLUMINA|HumanOmni2.5-4v1_D_kgp21362942-0_T_F_1844078184fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc01/30/1202/01/12137Genomicunknown
ss483864562ILLUMINA|HumanOmni2.5-4v1_B_SNP19-8949694-0_T_F_1640519068fwd/TA/Gttccttcagtaatgtagccctttccaattggnnnnnggtagaagccacagccatagagcc01/30/1202/03/12137Genomicunknown
ss491539445EXOME_CHIP|nonsyn_255671_chr_19_9088694fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc03/05/1203/06/12137Genomicunknown
ss491757455CLINSEQ_SNP|SNV-chr19-8949694fwd/TA/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata03/06/1203/13/12137Genomicunknown
ss534595802ILLUMINA|HumanOmni5-4v1_B__kgp21362942-0_T_F_1844078184fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc06/22/1206/25/12138Genomicunknown
ss565846631TISHKOFF|snp_chr19_9088694fwd/TA/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata11/22/1211/23/12138Genomicunknown
ss713476221NHLBI-ESP|ESP6500SI-chr19-9088694fwd/TA/Gttccttcagtaatgtagccctttccaattggatgttggtagaagccacagccatagagcc02/20/1302/20/13138Genomicunknown
ss1067584001JMKIDD_LAB|HGDP_exomes_chr19_9088694fwd/TA/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata07/09/1407/09/14142Genomicunknown
ss13623050501000GENOMES|PHASE3_V1_75991681fwd/A/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata08/16/1408/16/14142Genomicunknown
ss1428332344DDI|DDI_rs10406202fwd/TA/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata11/04/1411/04/14144Genomicunknown
ss1637541763EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_19_9088694_41934843fwd/A/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata03/04/1503/04/15144Genomicunknown
ss1680535796EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_19_9088694_41934843fwd/A/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata03/04/1503/04/15144Genomicunknown
ss1693348091EVA_EXAC|EVA_EXAC_8763407fwd/A/Gtcagtaatgtagccctttccaattggatgttggtagaagccacagccata03/04/1503/04/15144Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10406202|allelePos=201|totalLen=401|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=144
 AGAAAATGTG TCAACGAATT GGCTTGTCCT TCCTGGAGTG CTTGAGCCAG CAGCATCCAT
 GGACTGAGAT GGAGATACTG ACATTGAGAC ACTTTCTTTG GCCATGGTAA AATCCATAGA
 TGTCTCAGAG GAAGCTGTGG TTCCAATGGG CAGATGGCTT GTGTCCAATC TTCCTTCAGT
 AATGTAGCCC TTTCCAATTG
 R
 GATGTTGGTA GAAGCCACAG CCATAGAGCC TGGGCCATTC GTGGTCTCTG TTGTGAGGAT
 GGTTGTTGAT GGTTCCCTGA TAGAAGTTGC TTCCATGGAA CTAGTTGCTG GAGAAGTGAA
 TTTAGAGACC ATTACAGTAG CAGAGAGAGA AGTGGCAGAG GTTGAAACAG TGGTTGTTGC
 TGAAGGTAAC CCTGTCTTGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011295
dbSNP Blast Analysis
UniGene Cluster ID
432676

  Population Diversity (in rs orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss14697843HapMap-CEUEuropean 120IG 1.000 1.000
HapMap-HCBAsian 90IG 1.000 1.000
HapMap-JPTAsian 90IG 1.000 1.000
HapMap-YRISub-Saharan African 226IG 0.009 0.177 0.814 1.000 0.097 0.903
HAPMAP-ASW 98IG 0.061 0.939 1.000 0.031 0.969
HAPMAP-LWK 180IG 0.011 0.133 0.856 0.527 0.078 0.922
HAPMAP-MEX 98IG 0.020 0.980 1.000 0.010 0.990
HAPMAP-MKK 284IG 0.007 0.232 0.761 0.371 0.123 0.877
ENSEMBL_Watson 2IG 1.000 1.000
ENSEMBL_Venter 2IG 1.000 1.000
ss1693348091ALL120880AF 0.007 0.993
ss228035777pilot_1_YRI_low_coverage_panel 118AF 0.076 0.924
ss491757455CSAgilent 587GF 0.003 0.997 0.002 0.998

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.044+/-0.14294874300

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement