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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs9786706          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NT_011875.11:g.900370T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13607015 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9786706 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13607015WI_SSAHASNP|chrY.NT_011875.10_900370fwd/BC/Ttgagcagaggtcagaggtgctgctaagcctctacaatgtacaggacagttaaccaaagca11/05/0311/22/03119Genomicunknown
ss22885686SSAHASNP|WGSA-200403-chrY.chrY.NT_011875.10_900370fwd/BC/Ttgagcagaggtcagaggtgctgctaagcctctacaatgtacaggacagttaaccaaagca03/22/0403/22/04121Genomicunknown
ss75245914ILLUMINA|ILMN_Human_1M_rs9786706fwd/BC/Ttgagcagaggtcagaggtgctgctaagcctctacaatgtacaggacagttaaccaaagca08/28/0708/29/07129Genomicunknown
ss76461161AFFY|AFFY_6_1M_SNP_A-8322132rev/TA/Ggtcctgtacattgtagaggcttagcagcacct08/28/0708/30/07130Genomicunknown
ss105778236BGI|BGI_rs9786706fwd/BC/Ttgagcagaggtcagaggtgctgctaagcctctacaatgtacaggacagttaaccaaagca09/10/0806/19/09130Genomicunknown
ss115581760ILLUMINA-UK|NA18507_000000912_NCBI36.1_chrY_13208948fwd/BC/Ttgagcagaggtcagaggtgctgctaagcctctacaatgtacaggacagttaaccaaagca01/15/0901/15/09130Genomic99 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9786706|allelePos=335|totalLen=622|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 TTAAATTGAA ATTAAGTTGa tatatttaaa taataaaaaa ttCCATTAGA TTTGTAACTA
 GTAGTCCAAT AATTCAGAAT AATTAAGAGT AACAAATTTT ATTCTTTTTC AGTGATCCAT
 CAGGACTAAA ATGTATAGGG GGAAAAAGGT ATTTTTGTTA TTTGCAAACA CTATCATTTA
 ACACCTAGTT CACAGTCATA GATTATCCCC CTGTTTCTGA ATAGGTTatt tggcaatgta
 tggaggcatt tttagctgtc acaactgtag ggaaggaatg gatagtagtg gtaacagctc
 ctggtgagca gaggtcagag gtgctgctaa gcct
 Y
 ctacaatgta caggacagTT AACCAAAGCA GCAGAACAAA ATGTATCCAG CCCCAAATAA
 CAAAAATGCC TAGTTTTGGA AGACTTGTGT TAACCTAACA GTGGCACTTT GCATTAGAGG
 CTTTTGCATA GAGGCTTTTG GGTAGTGGAT CGCGTATTTC TTCCCAGTTT CCAAATATTA
 GAAATCATAG CTTAGTGTAC TAATAACTTA GATTAATAAA AATAAAGTTT ATTGATAAAC
 TTTAGCTCAA TTAACCTAGT TTATATAAAT AATACTTGGT ATTGATA

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NT_011875
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byCluster UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .