| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 119/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | A/G | | Ancestral Allele: | Not available | | Clinical Association: | unknown |
| | HGVS Names | | NT_011896.9:g.4103999G>A |
| |
SNP Details are organized in the following sections:
The submission ss13606433 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9786139 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss13606433 | WI_SSAHASNP|chrY.NT_011896.8_4161825 |  | fwd/T | A/G | ctgggcgacagagcgagactctatctcaaa | gagtttaaaacagaaatatcctttgtcccc | 11/05/03 | 11/22/03 | 119 | Genomic | | | unknown | | ss23041636 | WI_SSAHASNP|WIBR_S228_SNPS_200403.chrY.NT_011896.8_4161825 | | fwd/T | A/G | ctgggcgacagagcgagactctatctcaaa | gagtttaaaacagaaatatcctttgtcccc | 03/22/04 | 03/22/04 | 126 | Genomic | | | unknown | | ss75255818 | ILLUMINA|ILMN_Human_1M_rs9786139 | | fwd/T | A/G | ctgggcgacagagcgagactctatctcaaa | gagtttaaaacagaaatatcctttgtcccc | 08/28/07 | 08/29/07 | 129 | Genomic | | | unknown | | ss115581061 | ILLUMINA-UK|NA18507_000000213_NCBI36.1_chrY_6813519 | | fwd/T | A/G | ctgggcgacagagcgagactctatctcaaa | gagtttaaaacagaaatatcctttgtcccc | 01/15/09 | 01/15/09 | 130 | Genomic | | | 99 % |
>gnl|dbSNP|rs9786139|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130 Taaaaagttc agcatttact aacattggtg aaatgtgaat ggaagcaaca gtaagatagc
atttcacatc aatcagaatg tctatcagta aaaagtaaaa aaataacaga cgttggcatg
gtcacagaga aaggagaatg cttacggact gctgttggaa tataagttag ttcagccact
gcagaaacca gtttggagat tccttaaaga atttaaaaca ggccagatgc agtgactcat
gcctgtaatc ccagcacttt gggaggccaa ggggggcgga tcacgaggtc aggagatcga
gaccatccta acacagtgaa accccgtctc tactaaaaat acaaaaaatt agctgggcgt
ggtggtggac acctgtagtc ccagctactc aggaggctga ggcaggagaa tggcatgagc
ccaggaggca gagcttgcag ggagccaaaa ttgtgccact gcactccagc ctgggcgaca
gagcgagact ctatctcaaa
R
gagtttaaaa cagaaatatc ctttgtcccc acaatcttat tactagccat ctacccaaat
gaatataatt tgttttgcca tataagtcac atttgcacat atatttatca cagtactgtt
cataatatca aacacatgaa atcaatgtag atgcccactg atggcagatt ggataaagaa
tatgtgatgt atatataccc atgaaatact acacagtcaa aaaaatgaaa ttattctttg
cagcaacata gatgaagcag atggctctca tcctaagcaa attaatgcag aaacagaaaa
ctaaatatca tatgttctca cttatcagtg gtagctaaat atttagtaca catgaactca
aacaggtgaa caatagacat tgggcttact tgatgttgga aggtggcatg ggagtgagaa
taaagaaaac cacctatcag gtactatgct catcacctgg gtggtggaat catttgtaca
tgaaacccca gggacttgca
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
There is no frequency data.
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data |  | UNKNOWN | UNKNOWN | UNKNOWN |
| 
