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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs9785971          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NT_011896.9:g.4103991A>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13606259 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9785971 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13606259WI_SSAHASNP|chrY.NT_011896.8_4161817fwd/TA/Gactccagcctgggcgacagagcgagactcttctcaaaggagtttaaaacagaaatatcct11/05/0311/22/03119Genomicunknown
ss23041816WI_SSAHASNP|WIBR_S228_SNPS_200403.chrY.NT_011896.8_4161817fwd/TA/Gactccagcctgggcgacagagcgagactcttctcaaaggagtttaaaacagaaatatcct03/22/0403/22/04126Genomicunknown
ss75251034ILLUMINA|ILMN_Human_1M_rs9785971fwd/TA/Gactccagcctgggcgacagagcgagactcttctcaaaggagtttaaaacagaaatatcct08/28/0708/29/07129Genomicunknown
ss105777607BGI|BGI_rs9785971fwd/TA/Gactccagcctgggcgacagagcgagactcttctcaaaggagtttaaaacagaaatatcct09/10/0806/19/09130Genomicunknown
ss115581060ILLUMINA-UK|NA18507_000000212_NCBI36.1_chrY_6813511fwd/TA/Gactccagcctgggcgacagagcgagactcttctcaaaggagtttaaaacagaaatatcct01/15/0901/15/09130Genomic99 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9785971|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 atatgaaata aaaagttcag catttactaa cattggtgaa atgtgaatgg aagcaacagt
 aagatagcat ttcacatcaa tcagaatgtc tatcagtaaa aagtaaaaaa ataacagacg
 ttggcatggt cacagagaaa ggagaatgct tacggactgc tgttggaata taagttagtt
 cagccactgc agaaaccagt ttggagattc cttaaagaat ttaaaacagg ccagatgcag
 tgactcatgc ctgtaatccc agcactttgg gaggccaagg ggggcggatc acgaggtcag
 gagatcgaga ccatcctaac acagtgaaac cccgtctcta ctaaaaatac aaaaaattag
 ctgggcgtgg tggtggacac ctgtagtccc agctactcag gaggctgagg caggagaatg
 gcatgagccc aggaggcaga gcttgcaggg agccaaaatt gtgccactgc actccagcct
 gggcgacaga gcgagactct
 R
 tctcaaagga gtttaaaaca gaaatatcct ttgtccccac aatcttatta ctagccatct
 acccaaatga atataatttg ttttgccata taagtcacat ttgcacatat atttatcaca
 gtactgttca taatatcaaa cacatgaaat caatgtagat gcccactgat ggcagattgg
 ataaagaata tgtgatgtat atatacccat gaaatactac acagtcaaaa aaatgaaatt
 attctttgca gcaacataga tgaagcagat ggctctcatc ctaagcaaat taatgcagaa
 acagaaaact aaatatcata tgttctcact tatcagtggt agctaaatat ttagtacaca
 tgaactcaaa caggtgaaca atagacattg ggcttacttg atgttggaag gtggcatggg
 agtgagaata aagaaaacca cctatcaggt actatgctca tcacctgggt ggtggaatca
 tttgtacatg aaaccccAGG

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NT_011896
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byCluster UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .