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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs859208          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_003689.2:c.471G>C
NM_003689.2:c.626C>G
NP_003680.2:p.Gln157His
NP_003680.2:p.Thr209Arg
NT_004610.18:g.2459306C>G
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss48403432 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs859208 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss1258930KWOK|OVLP-000804-606659fwd/TC/Gcccggtggaagagacgctgcatgcctgccacggctgcaccaggaggtgagggggccctcc09/02/0010/10/0386Genomic97 %
ss2040464KWOK|OVLP-000925-41323fwd/TC/Gcccggtggaagagacgctgcatgcctgccacggctgcaccaggaggtgagggggccctcc10/06/0010/10/0387Genomic97 %
ss2580161SC_JCM|AL035413.19_61808fwd/TC/Gcccggtggaagagacgctgcatgcctgccacggctgcaccaggaggtgagggggccctcc11/03/0010/10/0389Genomicunknown
ss48403432APPLERA_GI|hCV8860121byFreqrev/C/Gggagggccccctcacctcctggtgcagccgtggcaggcatgcagcgtctcttccaccggg09/28/0511/03/06126Genomicunknown
ss68760430PERLEGEN|PGP03978528byFreqrev/C/Gggagggccccctcacctcctggtgcagccgtggcaggcatgcagcgtctcttccaccggg01/30/0708/14/07127Genomicunknown
ss1101420121000GENOMES|NA19240_2008_12_16_24979_chr1_19507551rev/C/Gggagggccccctcacctcctggtgcagccgtggcaggcatgcagcgtctcttccaccggg12/16/0812/17/08130Genomicunknown
ss118541909ILLUMINA-UK|NA18507_000024063_NCBI36.1_chr1_19507551rev/C/Gggagggccccctcacctcctggtgcagccgtggcaggcatgcagcgtctcttccaccggg01/21/0901/21/09130Genomic99 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs859208|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=130
 TTGATTATTA TCACCCCATT TTACAGATCA TACAATTGAG GCCAAGAGAA TATTAGTAAT
 TTAGCCAGGG TTACATGGTT AGCAAATGGC TCTAATAGGT CACTTAACCA TTCCATTCTC
 TCTCCAAGTG AAAATTGCCA CCAAGGCCAA CCCTTGGGAT GGAAAATCAC TAAAGCCTGA
 CAGTGTCCGG TCCCAGCTGG AGACGTCATT GAAGAGGCTG CAGTGTCCCC AAGTGGACCT
 CTTCTACCTA CACGCACCTG ACCACGGCAC CCCGGTGGAA GAGACGCTGC ATGCCTGCCA
 S
 CGGCTGCACC AGGAGGTGAG GGGGCCCTCC GAGCTCCAAA GGTGGGCTCC TGCTCCTTTC
 TTTATCCTGA TCCTACTCAT GAGAGCAGAG GCACCAGGGC AGTCCCAGGG TGGGGCAGGG
 AATAGCCCCA TTCCCTGGGG CCCCACCCTG GCCTCCCCTT CCTGGTCTGG GCTACACTGC
 GTTCTGACTG GAGCCTCACC CATGCAGGGC AAGTTCGTGG AGCTTGGCCT CTCCAACTAT
 GCTAGCTGGG AAGTGGCCGA GATCTGTACC CTCTGCAAGA GCAATGGCTG GATCCTGCCC

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NC_000001.8 AL360017 AL360017.3 AL360017.4
dbSNP Blast Analysis
UniGene Cluster ID
512807

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source C/G
 G/G
 HWP C
 G
ss2040464 CEPH 184 AF 1.000
ss48403432 HapMap-CEU European 120 IG 0.017 0.983 1.000 0.008 0.992
HapMap-HCB Asian 88 IG 0.273 0.727 0.294 0.136 0.864
HapMap-JPT Asian 88 IG 0.068 0.932 1.000 0.034 0.966
HapMap-YRI Sub-Saharan African 118 IG 0.559 0.441 0.005 0.280 0.720
AGI_ASP population multiple 40 IG 0.050 0.950 1.000 0.025 0.975
ss68760430 HapMap-CEU European 120 GF 1.000 0.500 0.500
HapMap-HCB Asian 90 GF 1.000 0.500 0.500
HapMap-JPT Asian 90 GF 1.000 0.500 0.500
HapMap-YRI Sub-Saharan African 120 GF 1.000 0.500 0.500
Concordant Genotype Total Sample C/G G/G
ss48403432 347 69
RefSNP Genotype Summary Total Individual C/G G/G
rs859208 546 69
Discordant Genotypes:
Indiviudal
SampleID		 SubSNP(ss) Genotype Population
Handle		 Submitter
Population		 Submitter
SampleID		 SampleID
Alias		 Submission
Batch		 NCBI
ProbeID
150 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10846 CEPH1334.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
151 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10847 CEPH1334.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
157 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12144 CEPH1334.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
158 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12145 CEPH1334.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
159 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12146 CEPH1334.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
160 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12239 CEPH1334.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
161 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07029 CEPH1340.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
162 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07019 CEPH1340.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
169 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA06994 CEPH1340.09 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
170 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07000 CEPH1340.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
171 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07022 CEPH1340.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
172 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07056 CEPH1340.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
174 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07048 CEPH1341.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
175 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA06991 CEPH1341.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
184 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07034 CEPH1341.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
185 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07055 CEPH1341.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
186 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA06993 CEPH1341.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
187 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA06985 CEPH1341.14 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
188 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10851 CEPH1344.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
199 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12056 CEPH1344.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
200 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12057 CEPH1344.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
203 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07348 CEPH1345.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
213 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07357 CEPH1345.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
214 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA07345 CEPH1345.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
215 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10857 CEPH1346.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
225 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12043 CEPH1346.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
226 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12044 CEPH1346.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
229 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10859 CEPH1347.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
238 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11881 CEPH1347.14 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
239 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11882 CEPH1347.15 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
242 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10854 CEPH1349.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
252 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11839 CEPH1349.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
253 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11840 CEPH1349.14 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
254 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10856 CEPH1350.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
255 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10855 CEPH1350.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
262 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11829 CEPH1350.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
263 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11830 CEPH1350.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
264 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11831 CEPH1350.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
265 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11832 CEPH1350.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
335 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12707 CEPH1358.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
344 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12716 CEPH1358.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
345 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12717 CEPH1358.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
348 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10860 CEPH1362.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
349 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10861 CEPH1362.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
360 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11992 CEPH1362.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
361 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11993 CEPH1362.14 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
362 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11994 CEPH1362.15 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
363 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA11995 CEPH1362.16 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
366 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10863 CEPH1375.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
373 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12264 CEPH1375.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
374 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12234 CEPH1375.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
399 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10830 CEPH1408.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
400 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10831 CEPH1408.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
408 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12154 CEPH1408.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
409 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12236 CEPH1408.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
410 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12155 CEPH1408.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
411 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12156 CEPH1408.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
429 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10835 CEPH1416.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
438 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12248 CEPH1416.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
439 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12249 CEPH1416.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
456 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10838 CEPH1420.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
457 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA10839 CEPH1420.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
464 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12003 CEPH1420.09 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
465 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12004 CEPH1420.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
466 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12005 CEPH1420.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
467 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12006 CEPH1420.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
524 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12740 CEPH1444.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
535 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12750 CEPH1444.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
536 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12751 CEPH1444.14 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
537 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12752 CEPH1447.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
538 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12753 CEPH1447.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
545 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12760 CEPH1447.09 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
546 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12761 CEPH1447.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
547 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12762 CEPH1447.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
548 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12763 CEPH1447.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
565 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12801 CEPH1454.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
566 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12802 CEPH1454.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
577 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12813 CEPH1454.13 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
578 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12814 CEPH1454.14 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
579 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12815 CEPH1454.15 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
610 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12864 CEPH1459.01 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
611 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12865 CEPH1459.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
618 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12872 CEPH1459.09 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
619 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12873 CEPH1459.10 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
620 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12874 CEPH1459.11 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
621 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12875 CEPH1459.12 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
623 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12878 CEPH1463.02 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
636 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12891 CEPH1463.15 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
637 ss48403432 C/C CSHL-HAPMAP HapMap-CEU NA12892 CEPH1463.16 r27_ch1_CEU_illumina:golden_gate_1.0.0 209495
5138 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19130 YOR101.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5139 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19100 YOR105.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5140 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19099 YOR105.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5141 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19098 YOR105.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5142 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19194 YOR112.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5143 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19193 YOR112.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5144 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19192 YOR112.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5149 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18524 CH18524 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5151 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18558 CH18558 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5152 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18532 CH18532 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5153 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18561 CH18561 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5156 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18603 CH18603 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5157 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18540 CH18540 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5158 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18605 CH18605 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5159 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18542 CH18542 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5162 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18547 CH18547 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5164 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18550 CH18550 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5165 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18608 CH18608 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5167 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18611 CH18611 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5168 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18555 CH18555 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5169 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18564 CH18564 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5172 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18570 CH18570 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5174 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18571 CH18571 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5175 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18620 CH18620 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5176 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18621 CH18621 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5177 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18594 CH18594 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5178 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18622 CH18622 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5179 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18573 CH18573 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5180 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18623 CH18623 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5181 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18576 CH18576 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5182 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18577 CH18577 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5183 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18624 CH18624 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5185 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18632 CH18632 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5186 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18582 CH18582 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5187 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18633 CH18633 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5188 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18635 CH18635 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5190 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18636 CH18636 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5191 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18593 CH18593 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5192 ss48403432 C/C CSHL-HAPMAP HapMap-HCB NA18637 CH18637 r27_ch1_CHB_illumina:golden_gate_1.0.0 209495
5193 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18942 JA18942 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5194 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18940 JA18940 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5195 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18951 JA18951 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5196 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18943 JA18943 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5197 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18947 JA18947 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5200 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18949 JA18949 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5201 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18948 JA18948 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5202 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18952 JA18952 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5203 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18956 JA18956 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5204 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18964 JA18964 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5205 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18953 JA18953 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5206 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18968 JA18968 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5207 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18959 JA18959 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5208 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18969 JA18969 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5209 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18960 JA18960 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5210 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18961 JA18961 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5211 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18972 JA18972 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5212 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18965 JA18965 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5213 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18973 JA18973 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5214 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18966 JA18966 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5215 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18975 JA18975 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5216 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18967 JA18967 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5217 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18976 JA18976 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5218 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18978 JA18978 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5219 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18970 JA18970 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5220 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18980 JA18980 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5221 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18995 JA18995 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5222 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18981 JA18981 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5223 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18971 JA18971 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5224 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18974 JA18974 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5225 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18987 JA18987 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5226 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18990 JA18990 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5227 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18991 JA18991 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5228 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18994 JA18994 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5229 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18992 JA18992 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5230 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18997 JA18997 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5231 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18998 JA18998 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5232 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA19000 JA19000 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5233 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA19005 JA19005 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5234 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA18999 JA18999 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5235 ss48403432 C/C CSHL-HAPMAP HapMap-JPT NA19007 JA19007 r27_ch1_JPT_illumina:golden_gate_1.0.0 209495
5237 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18501 YOR004.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5240 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18504 YOR005.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5247 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18515 YOR013.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5248 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18517 YOR013.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5249 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18516 YOR013.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5250 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18521 YOR016.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5251 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18523 YOR016.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5252 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18522 YOR016.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5253 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18872 YOR017.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5254 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18870 YOR017.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5258 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18853 YOR018.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5262 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18863 YOR024.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5263 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18861 YOR024.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5264 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA18862 YOR024.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5270 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19092 YOR040.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5271 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19103 YOR042.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5272 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19102 YOR042.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5275 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19137 YOR043.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5277 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19202 YOR045.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5278 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19201 YOR045.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5279 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19200 YOR045.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5281 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19172 YOR047.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5284 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19204 YOR048.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5290 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19206 YOR051.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5296 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19222 YOR058.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5298 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19120 YOR060.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5299 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19116 YOR060.02 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5301 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19142 YOR071.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5307 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19145 YOR074.01 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
5309 ss48403432 C/C CSHL-HAPMAP HapMap-YRI NA19144 YOR074.03 r27_ch1_YRI_illumina:golden_gate_1.0.0 209495
Genotype data submitted for546 samples from546 individualsIndividual with multiple genotypes submission:0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
 UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .