Reference SNP(refSNP) Cluster Report: rs3758581

Reference SNP(refSNP) Cluster Report: rs3758581

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	107/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names
NG_008384.1:g.85161A>G
NM_000769.1:c.991A>G
NP_000760.1:p.Ile331Val
NT_030059.12:g.15351149G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss71645826 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3758581 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss4944613	YUSUKE\|IMS-JST111901	fwd/T	A/G	gctaaagtccaggaagagattgaacgtgtc	ttggcagaaaccggagcccctgcatgcagg	08/01/02	05/28/04	107	Genomic	unknown
ss28531457	EGP_SNPS\|CYP2C19-082167	fwd/T	A/G	gctaaagtccaggaagagattgaacgtgtc	ttggcagaaaccggagcccctgcatgcagg	11/08/04	01/27/05	126	Genomic	unknown
ss32475267	BIOVENTURES\|BV07020	fwd/T	A/G	gctaaagtccaggaagagattgaacgtgtc	ttggcagaaaccggagcccctgcatgcagg	12/10/04		125	Genomic	unknown
ss71645826	SI_EXO\|NT_030059.12_15351149	fwd/T	A/G	gctaaagtccaggaagagattgaacgtgtc	ttggcagaaaccggagcccctgcatgcagg	05/07/07	03/31/08	127	Genomic	unknown
ss76860183	CGM_KYOTO\|228	fwd/T	A/G	gctaaagtccaggaagagattgaacgtgtc	ttggcagaaaccggagcccctgcatgcagg	09/12/07	09/12/07	129	cDNA	unknown
ss79314157	CCHMC-CAE-PGCORE\|CYP2C19_80161G>A	fwd/T	A/G	gctaaagtccaggaagagattgaacgtgtc	ttggcagaaaccggagcccctgcatgcagg	11/20/07	11/20/07	130	Genomic	unknown

Fasta sequence (Legend)

 TTGGAAATTT TAGTCCATTT ACATTCAGTG TTATTATTAA GTAAGGACTT ACTTCTGCCT
 TTTTGTTATT TGTTTACTGG TTGTTTTGTG GGCTTCTCTT CCTTCTTTCA TTTCTTCCTG
 CCTTCCTTTA TTGATAATAA TTTTCTCTGC ATATATGTGT ACAGATTTTT CTTAATGCCT
 AGCTTAAGGC ACAGTTACAC ATTTGTGCAT CTGTAGCAGT CCTCTCTTTA AGTTACACAT
 ACTTCCAGCA CTATAATTTA AATTTATTAT GATGTTTGGA TACCTTCATC ATGATTCATG
 TACCCCTGAA TTGCTAGAAC AAATGTTCCA TTTCTCTCCT TTTCCATCAG TTCTTACTTG
 TGTCTTGTCA GCTAAAGTCC AGGAAGAGAT TGAACGTGTC
 R
 TTGGCAGAAA CCGGAGCCCC TGCATGCAGG ACAGGGGCCA CATGCCCTAC ACAGATGCTG
 TGGTGCACGA GGTCCAGAGA TACATCGACC TCATCCCCAC CAGCCTGCCC CATGCAGTGA
 CCTGTGACGT TAAATTCAGA AACTACCTCA TTCCCAAGGT AAGTTTGTTT CTCCTACACT
 GCAACTCCAT GTTCTTTTAT TCCTCAAATT CACAGTATGA TTCTTACCCT CTACCATCAC
 TGGGTGAGAG AAGTGCATTA CTCCTATGTA TGGCAGTTTA ATTGGACTTT CTGTTGATTC
 CAGTTTGGGA CTATAAAGAT TTGTAACAGG TCTTAGTGTC TCACAGTGTG TGTTTTTCAG
 ATTTATTCTT TCTTCAAGAT TGTTCTGGCT ACTCTTAAGT

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_030059.12

dbSNP Blast Analysis

UniGene Cluster ID
282409

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss28531457	PDR90	Global	178	IG		0.079	0.921	0.752	0.039	0.961

	HapMap-CEU	European	118	IG		0.102	0.898	0.655	0.051	0.949

	HapMap-HCB	Asian	90	IG	0.022	0.089	0.889	0.752	0.067	0.933

	HapMap-JPT	Asian	88	IG	0.023	0.159	0.818	0.527	0.102	0.898

	HapMap-YRI	Sub-Saharan African	120	IG			1.000			1.000

ss71645826	HapMap-CEU	European	118	IG		0.102	0.898		0.051	0.949

	HapMap-HCB	Asian	90	IG	0.022	0.089	0.889		0.067	0.933

	HapMap-JPT	Asian	88	IG	0.023	0.159	0.818		0.102	0.898

	HapMap-YRI	Sub-Saharan African	120	IG			1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict	Additional Freq. Data
	0.092+/-0.194	615	499	0	0	ALFRED: The Allele Frequency Database

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	YES

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Revised: May 25, 2006 1:38 PM .