| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 126/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | G/T | | Ancestral Allele: | Not available | | Clinical Association: | unknown |
| | HGVS Names | | NT_011875.11:g.1316954T>G |
| |
SNP Details are organized in the following sections:
The submission ss43975167 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35760092 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss43975167 | ABI|hCV2664273 |  | fwd/B | G/T | tctctgatttgggttgcaagtttgcaaaat | ttaaagtaacaaaaagtggggcggttccaa | 07/18/05 | 07/18/05 | 126 | Genomic | | | unknown |
>gnl|dbSNP|rs35760092|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=126 AGGTGATCCA CCCGCCTTGG CCTCCCAAAG TGCTGGGATT ACAGGCATGA GCCACCGTGC
TCCACGCTGT CTTCTTTACA ACAGTAACTA GCAGCCTAAA CCCACATTTG TCAAAGCTCT
CACAGAGCTT CTGAGTTTGG AGTGCTGCCC ATTTCAGGTG GCCTGCAGGT CACAAGGGAA
TGCCCCAACT GTAGAGGTAG TCTGACTATG TATTTGTGCC CAGAAATCCT ATGAAGTATG
CTTTCTACAG TGTTTCACTG ATGAACACAC TCTCTGATTT GGGTTGCAAG TTTGCAAAAT
K
TTAAAGTAAC AAAAAGTGGG GCGGTTCCAA GATGGCCAAA TTGGAACAGC TCCAGTTTAC
AGCTCCCAGC GTGAGCAACA CAGAAGACGG GTGATTTCTG CATTTCCAAC TGAGGTACCG
GGTTCATCTC ACTGGGGCTT GTCAGACAGT GGGTGCAATG TACTGAGTGT GAGCCAAAGC
AAGGCGAGGC ATCACCTCAC CCGGGAAGCG CAAAGGGGTC AGGGAATTCC CTTTCATAGC
CAAGCAGAGC TGTGACACAC AGCACCTGGA GAATTGGGTC GCTCCCACCC TAATACTGTG
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
There is no frequency data.
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data | | UNKNOWN | UNKNOWN | UNKNOWN |
| 
