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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs35517777          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/130
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_000550.1:c.1042delT
NM_000550.2:c.1042delT
NP_000541.1:p.Tyr348fx
NT_008413.17:g.12692399delT
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss43376091 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35517777 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss43376091ABI|hCV33355952fwd/-/Tgaagttggtttatttgacacgcctccttttattccaactctacaaacagtttccgaaaca07/18/0507/18/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs35517777|allelePos=301|totalLen=601|taxid=9606|snpclass=2|alleles='-/T'|mol=Genomic|build=126
 ATGGTAACTT AGATTTTCTC ATTTTAATGC TACCAAGTAT GCATTTTTAA ATTTTCTTTT
 CTACCAAGGA AAACCTATAT TTCATATTCA TGCTATGTAT AAAGTTTTAA AGAGCGACAA
 TAAGAACTCC AAACATTGTG TAAATGTTTC CACATCCCAT TTTTTTCTGC AGGCACCGAG
 GATGGGCCAA TTAGGAGAAA TCCAGCTGGA AATGTGGCCA GACCAATGGT GCAACGTCTT
 CCTGAACCAC AGGATGTCGC TCAGTGCTTG GAAGTTGGTT TATTTGACAC GCCTCCTTTT
 N
 ATTCCAACTC TACAAACAGT TTCCGAAACA CAGTGGAAGG CAAGTAAATG AAATCAGTAT
 TTTTAAAAGA TCTAGTTATC AGAGAAAACT GAATTATTCA AAAGCAAGTT TCTTTGAGAA
 GGCTTTGAAT AGTATATTAA TCCTGTGTGT TTATGTGAAT GAGATTTTCT ATTATGATAC
 ACCTGCTTGA AAAAGGAACT TTCTTAAAAA GAAGAGTCAA CCATGAAGCT CTTTTCATTA
 TAGGTGAAGC CCTTGGAAAT CATGCTCTAA TTTCTTAAAC ACCCAAAAAC TTTTTAAATT

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .