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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs2566671          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NG_002812.2:g.200T>C
NT_011896.9:g.3106030T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss14424386 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2566671 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss3602964SC_JCM|AC010977.4_4363fwd/BC/Tagacttcctggaaccaccgcccccaactccgcatccatgtggatttccctctgatcctct09/24/0110/10/03100Genomicunknown
ss14424386WI_SSAHASNP|chrY.NT_011896.8_3163856fwd/BC/Tagacttcctggaaccaccgcccccaactccgcatccatgtggatttccctctgatcctct11/05/0311/22/03119Genomicunknown
ss22884298SSAHASNP|WGSA-200403-chrY.chrY.NT_011896.8_3163856fwd/BC/Tagacttcctggaaccaccgcccccaactccgcatccatgtggatttccctctgatcctct03/22/0403/22/04121Genomicunknown
ss35291558SSAHASNP|TA-079.chrY_5798911fwd/BC/Tagacttcctggaaccaccgcccccaactccgcatccatgtggatttccctctgatcctct03/11/05125Genomicunknown
ss75313713ILLUMINA|ILMN_Human_1M_rs2566671fwd/BC/Tagacttcctggaaccaccgcccccaactccgcatccatgtggatttccctctgatcctct08/28/0708/29/07129Genomicunknown
ss105777568BGI|BGI_rs2566671fwd/BC/Tagacttcctggaaccaccgcccccaactccgcatccatgtggatttccctctgatcctct09/10/0806/19/09130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2566671|allelePos=501|totalLen=701|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 TCAAAGGCTT TTctatgcag atttgtgaag ctcttccact gtgctattcc ttcaactctg
 gtactctaca ccacaaattc caaagtttag ccatctaaac tttccaaaat ttcaattctg
 gtcttctcaa tccagggaga tgactggtat tttcctgagt ttacctttcc tATTTCTCTG
 TCTGGGGTAT TGTGGTGCTT ACCTTCTTTT ATCCCTTCAC TGATTACGGT TCTATGCTAC
 ATGTTTGCCA ACGTCTGCAG ACAGTATTTT ATCTGTATTT TCCAGTTTTG TAATTTTTTC
 TGAAAGGAGG GCAAGTCCAC TACCAGTTAT TCTATTAAAG TAGGAAAGAT TTCATCTTTC
 ATTTTTAATA TACCAAATTT ACAATATTTT GTAATAAAAT AATCACTTAT GATAGTCCAT
 GTTTTTATTT ATTACTATTT GCTTTTCTTA GTTGTATTTA ACTATAAAAT AGACTTCCTG
 GAACCACCGC CCCCAACTCC
 Y
 GCATCCATGT GGATTTCCCT CTGATCCTCT ATGAGATGTG AGCCTCGGAA GCAGACAATA
 GCACCTCCTG CTCCAGCAAG AAACTCCCAG GCTCAAGGTG TGGCTTCCAT TAAGGAGCCC
 AGGCTGGGGC CACAACTCTG AATAACCTCT GTTGGCACAT AACCTTCAGC TGTGAGTGGT
 TCAGTCCTGT GATATTGGTT

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NT_011896 AL121871
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
 UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .