Skip to main content
NCBI
 dbSNP
PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
transparent GIF
Spacer gif
BUILD 130
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs1738025          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:89/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_012067.2:c.967A>G
NP_036199.2:p.Thr323Ala
NT_004610.18:g.2433596T>C
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss9845202 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1738025 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss2580168SC_JCM|AL035413.19_87518fwd/TA/Ggacgcctttaatcaagcctggcatttggttctcacgaatgtcccaactacttccgctagg11/03/0010/10/0389Genomicunknown
ss9845202BCM_SSAHASNP|chr1.NT_004610.15_412504byFreqrev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc06/27/0310/25/06116Genomicunknown
ss15767785SC_SNP|NT_004610.16_412504rev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc11/17/0311/22/03120Genomicunknown
ss20478095SSAHASNP|WGSA-200403-chr1.chr1.NT_004610.16_412504rev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc03/18/0403/18/04121Genomicunknown
ss28511032MGC_GENOME_DIFF|BC025709x37548632-T412504Crev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc08/25/0408/25/04126cDNAunknown
ss48402885APPLERA_GI|hCV9495483byFreqrev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc09/28/0511/03/06126Genomicunknown
ss82902390HGSV|Cor18956_SNV_20070510.chr1_19354560rev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc11/30/0712/03/07130Genomicunknown
ss87275146BCMHGSC_JDW|JWB-0019726rev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc02/26/0802/26/08129Genomicunknown
ss97923172HUMANGENOME_JCVI|1103675037947rev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc03/30/0803/30/08130Genomicunknown
ss105128279BGI|BGI_rs1738025rev/BC/Tcctagcggaagtagttgggacattcgtgagaaccaaatgccaggcttgattaaaggcgtc08/06/0806/16/09130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1738025|allelePos=201|totalLen=823|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 CTGGGACGGC TGTGAGTAGA GTCGCTGTGC AGCAGAAGAG GGTTGAAGTC TGGCCGTCTC
 CCTTGCAGGG TGCCCACGGG GACGCGGTCA TCCTGGGCAT GTCCAGCCTG GAGCAGCTGG
 AGCAGAACTT GGCAGCGGCA GAGGAAGGGC CCCTGGAGCC GGCTGTCGTG GACGCCTTTA
 ATCAAGCCTG GCATTTGGTT
 R
 CTCACGAATG TCCCAACTAC TTCCGCTAGG CCCATCGTTT CTCAGGCTGC CCAAGGCTCT
 TCTGTAACAT CTTTTGTTAC TCACATTTTC TTTAATTTAG AACTGCCTCA GTAAATTCTT
 AGGGATGGAA GTATTTGGAC AAAAACCTAA TAGAAGAGTC ACCACCAAAT GAAGAATAAA
 ACTCCCAGGG TGCTGtgtgt tagtctgttt gcgttgctat aaaagaatac ctgagactgg
 gtcatttata aagaaaagag gtttatttgg ctcaccactc tgcagtctgt acaagggggt
 gtggtgccgg catctgctct tggtgagggc ctcaggaagc ttacagtcat ggcagagggg
 gaagcggcgc cagcgtgtca catggtgaga gagggagcaa gagacagaca ggggaggaaa
 ttccaggctc ttttaaacaa ccagatcctg tgtgaactca tagagctgga actcactcat
 tactatacag atggcaccaa gccattcatg tgggatttgc ccccataccc taacccctcc
 caccaggctc acctctaaca ttggggatca cattgcaaca tgagatttgg aggggacaaa
 ataccctgat gatatcaTTG TA

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NT_004610 ABBA01059756 AL360017 BC025709
dbSNP Blast Analysis
UniGene Cluster ID
6980

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source A/A
 A/G
 G/G
 HWP A
 G
ss48402885 AGI_ASP population multiple 42 IG 0.333 0.667 0.371 0.167 0.833
ss9845202 HapMap-CEU European 120 IG 0.017 0.300 0.683 0.584 0.167 0.833
HapMap-HCB Asian 90 IG 0.044 0.311 0.644 1.000 0.200 0.800
HapMap-JPT Asian 88 IG 0.045 0.318 0.636 1.000 0.205 0.795

Summary Average
Het.+/- std err:		 Individual
Count		 Founders
Count		 Individual
Overlap		 Genotype
Conflict
0.302+/-0.245 372 313 0 0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreq UNKNOWN UNKNOWN UNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .