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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs13933          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:cDNA
Created/Updated in build:52/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss24780779 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs13933 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss16294CGAP-GAI|61802fwd/BA/Tgaagacatattctacacttcaaagctttgggcaattcccatcgaccagagttggtccgac08/23/9910/10/0352cDNA99 %
ss1546495LEE|926106fwd/BA/Tgaagacatattctacacttcaaagctttgggcaattcccatcgaccagagttggtccgac09/13/0010/10/03102cDNAunknown
ss4431879LEE|e926106fwd/BA/Tgaagacatattctacacttcaaagctttgggcaattcccatcgaccagagttggtccgac04/26/0210/10/03108cDNAunknown
ss4437029LEE|e1509067fwd/BA/Tgaagacatattctacacttcaaagctttgggcaattcccatcgaccagagttggtccgac04/26/0210/10/03108cDNAunknown
ss24780779SEQUENOM|sqnm7176fwd/BA/Tgaagacatattctacacttcaaagctttgggcaattcccatcgaccagagttggtccgac06/18/0406/18/04130cDNAunknown
ss24792339SEQUENOM|sqnm106012fwd/BA/Tgaagacatattctacacttcaaagctttgggcaattcccatcgaccagagttggtccgac06/18/0406/18/04130cDNAunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs13933|allelePos=256|totalLen=511|taxid=9606|snpclass=1|alleles='A/T'|mol=cDNA|build=130
 GATTCGAAAT ANCAGTGTGT GAAGCTGAAT GATGGTCACT TCATGCCTGT CCTGGGATTT
 GGCACCTATG CGCCTGCAGA GGTTCCTAAA AGTAAAGCTN TAGAGGCCGT CAAATTGGCA
 ATNGAAGCCG GGTTCCNCCA TATTGATTCT GCNCATGTTT ACAATAATGA GGAGCAGGTT
 GGACTGGCCA TCCGAAGCAA GATTGCAGAT GGCAGNGTGA AGAGAGAAGA CATATTCTAC
 ACTTCAAAGC TTTGG
 W
 GCAATTCCCA TCGACCAGAG TTGGTCCGAC CAGCCTTGGA AAGGTCACTG AAAAATCTTC
 AATTGGANTA TGTTGACCTC TANCTTATTC ATTTTCCAGT GTCTGTAAAG CCAGGTGAGG
 AAGTGATCCC AAAAGATGAA AATGGAAAAA TACTATTTGA CACAGTGGAT CTCTGTGCCA
 CNTGGGAGGC CNTGGAGAAG TGTAAAGATG CAGGATTGGC CAAGTCCATC GGGGTGTCCA
 ACTTCAACCN CAGGC

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
dbSTS GenBank
sqnm106012 sqnm7176 U05598 Hs.201967 Hs.275374 NM_001354
dbSNP Blast Analysis
UniGene Cluster ID
498513

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .