| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 121/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | A/G | | Ancestral Allele: | A | | Clinical Association: | unknown |
| | HGVS Names | | NT_011875.11:g.5278225A>G |
| |
SNP Details are organized in the following sections:
The submission ss22884719 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs13304625 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss22884719 | SSAHASNP|WGSA-200403-chrY.chrY.NT_011875.10_5214750 |  | fwd/T | A/G | cgtaaagaagttgcagcttatatcccttgc | tgcacagttcattatggagttattgctcat | 03/22/04 | 03/22/04 | 121 | Genomic | | | unknown | | ss43981850 | ABI|hCV31463081 | | fwd/T | A/G | cgtaaagaagttgcagcttatatcccttgc | tgcacagttcattatggagttattgctcat | 07/18/05 | 07/18/05 | 126 | Genomic | | | unknown | | ss75253216 | ILLUMINA|ILMN_Human_1M_rs13304625 | | fwd/T | A/G | cgtaaagaagttgcagcttatatcccttgc | tgcacagttcattatggagttattgctcat | 08/28/07 | 08/29/07 | 129 | Genomic | | | unknown |
>gnl|dbSNP|rs13304625|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=129 AAAATGTTCT ATTACTTTAA GCAAAAACTC TGATTTTGAC TTATTAGCAA ATTTTAATAA
TGCCATATTA TAATACTCAC CATCTGTTTA TTTGTGAGAA AATGACTGTT TAAAGTACTT
GGTATTTCTT CAAATGTTAC ACATAACTAA GATTTAAAGc agtagtcccc aagttttttg
gcaccaggac cagtttagtg gaagacaatt tttccatgga cagtggtgac aggttttgga
gtgggtgatt tctggatgat tcaagcacat tacatttatt gtgcactgta tatctatgat
tattatattg taatatataa tgaaattata tatatacata aaatatataa tgaaataaga
cacttcacca taatggaatt ggtgggaacc ctaagcttat tttcctgaaa ctaggtggtc
ccatctagag gtgacaagat acagtgaaag atcatcaggc attagatttt cgtaaagaag
ttgcagctta tatcccttgc
R
tgcacagttc attatggagt tattgctcat atgagaatct actgctgctg ctgatctgac
aggaggcaga gctcagacag tgatgtgagc aatgaggagg gactgtaaat acagatctag
cttttcttgt tgaaccacca atcacaggcc ctagaccagt agtggtccat ggcccagggg
ctggggaccc atgATTTAAA GCATCCTTGT GTCTTAAATA TTGTGCAAAT AGCACATGTC
TAAAGTTTAG TTCTTAAGCA ACAGGTCCTG GGTCAAGTAT TCTTGTGTGG TGAGGTGCTG
AGAAAATGCT CCCTGGAGAA ACTCATAGAA GGCAAAGACA AGTAGGTAGA GAAGACCAGG
AGCCCTCAGT TTGATCCCAT AGGGAACTGT AGAGCCTAAG TGGTCCCAGA GGACATTTCT
CAACTAAAAC AAATGAAGCA GAGCACATTG GTCAGGCGTG GCTAGTAGTT GACTTAGGGT
GTGCCCAGGA GTATCAACTC
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
There is no frequency data.
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data |  | UNKNOWN | UNKNOWN | UNKNOWN |
| 
