| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 121/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | G/T | | Ancestral Allele: | Not available | | Clinical Association: | unknown |
| | HGVS Names | | NG_004832.1:g.139651G>T | | NT_011875.11:g.9713007G>T |
| |
SNP Details are organized in the following sections:
The submission ss22883742 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs13303755 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss22883742 | SSAHASNP|WGSA-200403-chrY.chrY.NT_011875.10_9649532 |  | fwd/B | G/T | attagcattttcataagcaagcagctgaat | atccctttcctggcatgagaatcctaaata | 03/22/04 | 03/22/04 | 121 | Genomic | | | unknown | | ss43987025 | ABI|hCV32284832 | | fwd/B | G/T | attagcattttcataagcaagcagctgaat | atccctttcctggcatgagaatcctaaata | 07/18/05 | 07/18/05 | 126 | Genomic | | | unknown | | ss94450626 | BCMHGSC_JDW|JWB-2714873 | | fwd/B | G/T | attagcattttcataagcaagcagctgaat | atccctttcctggcatgagaatcctaaata | 02/26/08 | 03/06/08 | 129 | Genomic | | | unknown |
>gnl|dbSNP|rs13303755|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=129 tacagggata gactgggccg ggaagactcc atttggagtc ggggacatcc catcctgaat
tggaaatgcc ccattttgaa tcggggccag gggctggccc ctctctccat ttcccagcaa
gggctgtctg ctgttatcaa actttgaaag acattgatta gctcagtgtt tactttttta
catatgggac agattcctgg taccctgctt tttcctcctg agttttgcct tttttggctc
tttgtacatt ctctttttgt atgtcctgtc tgcccacaat tatagcaaga tccaggcaac
actcgtgtgc tttttgttac ctttagttca tccactgcca gagctaggag gctggcctta
tgtaagtgcc ccacaatgcc atggtaggct ttaatgtatt cgcttaaaga tttttcctca
tttagatctg cctttccctt aataggtcta attgctgcct gacattctgt attagcattt
tcataagcaa gcagctgaat
K
atccctttcc tggcatgaga atcctaaata cccttttgag acatgtcttg caaatgggca
ataaaatctg gataagtctc ccttggaccc tgttaaactg agttaaaaga aggataagta
gtaccagggt tgtgaatttt ttcccagact caggcacatc gttctgagct gataagcagc
ctcatcaccc attactatct gttgatttag agtaccccat gcctgtccga ttccaagcaa
ttggtcagat gtgatattaa cagaggttgg gtttgagcat ttctgcatgc ctgatttgtt
gcttaatctg tccaccaggt tttaaattgg agaaattcag agggggacag ggtggatcag
gctaatgact cccaatctat aggtattaaa cgccagttat aagccacaga ttgtaacaag
gaatgaatat aaggataatt tggcccatat tgtccaattg cttgctttaa agacttttaa
tattttaaaa ggaaatggct
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
There is no frequency data.
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data | | UNKNOWN | UNKNOWN | UNKNOWN |
| 
