| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 120/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | C/G | | Ancestral Allele: | C | | Clinical Association: | unknown |
| | HGVS Names | | NT_011875.11:g.1855244C>G |
| |
SNP Details are organized in the following sections:
The submission ss17301980 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11799226 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss17301980 | CSHL-HAPMAP|CSHL-HuAA-200402.chrY.NT_011875.10_1855244 |  | fwd/T | C/G | atgaaattataacaaccgctctctcagaca | cagcgcaataaaattgggaatcaagactaa | 02/17/04 | 03/04/04 | 120 | Genomic | | | unknown | | ss43955068 | ABI|hCV2668045 | | fwd/ | C/G | atgaaattataacaaccgctctctcagaca | cagcgcaataaaattgggaatcaagactaa | 07/18/05 | 07/18/05 | 126 | Genomic | | | unknown |
>gnl|dbSNP|rs11799226|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=126 Aaaaatctac caagtaaaca gaagacagaa agaatcagag gttgtcattt taagttcaca
cataaaggac tttaaaccaa aaagataaga aatgacaaag ggcattacgt aaagctaaag
agtacaattt aacaagaaga cttagctatt ttaaacacat atgtatgcac ccaacatagg
cttcataaaa caatttctta gactttcaaa gaatcttaga ctcccacaca ctaatgacag
aatttaagat atcagtattg acaatatttg gatgcatcat cgaggcaaaa aacgtacaaa
aatatttagg acctaaactc agcactggat caaatagacc tgagggtcat ttacagaagt
ctttgccccc aaaacaacag aatatacatt cttatcattg tcacagggct gattctctaa
aattgaccat gtagtcagac attaaaccct cctcagcaac agtaaaacag atgaaattat
aacaaccgct ctctcagaca
S
cagcgcaata aaattgggaa tcaagactaa taaatttact gaaaaccata caattacatg
gaaattgaat aacctgcttc tgaatgcttc caggtaaata atgacattaa ggcataaatc
aagaacctcc ttgaaacaaa tgagaacaaa gatacaacat accagaatct cttggacaca
gacagctaag gcagtgttaa gaggcaaatt tatagcatta aacacccaca taaaaaagaa
atatctcaat ctagcaatat aacatttcaa ctaaaataac aagagaagca agagcaaact
aaccccacag ttagcacaag aaaggaaata ccctaaattt gatctgaact gaggtaatta
acatattaac aaccattcaa aagatcaatg aatccaggag ttggtttttg gaaattaata
atatagatag actgctaact agactaataa aaaagagagc agatccaaat aaatacagaa
atgataaagg ggatagtacc
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
There is no frequency data.
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data |  | UNKNOWN | UNKNOWN | UNKNOWN |
| 
