Skip to main content
NCBI
dbSNP

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
transparent GIF
Spacer gif
BUILD 130
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
SNP linked to Gene PPARD(geneID:5467) Via Contig Annotation
rs# on all gene models to Batch Query
all rs# to file.

  Gene Model (mRNA alignment) information from genome sequence back to top
Total gene model (contig mRNA transcript): 1
mrna transcript protein mrna orientation Contig Contig Label List SNP
NM_006238.3 plus strand NP_006229.1 forward NT_007592.14 reference <- currently shown

Include clinically associated in gene region cSNP has frequency double hit

gene model
(contig mRNA transcript):
Contig Label Contig mrna protein mrna orientation transcript snp count
reference NT_007592.14 NM_006238.3 NP_006229.1 forward plus strand 4, coding

Color Legend

Region Contig
position
mRNA
pos
dbSNP rs#
cluster id
Hetero-
zygosity
Validation 3D Clinically
Associated
Function dbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
PubMed
exon_1 26237115 310 start codon 1
exon_6 26250037 798 rs2076167 0.459 byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData Yes synonymous T Asn [N] 3 163
contig reference C Asn [N] 3 163
26250154 915 rs9658160 0.003 byClusterwithHapMapFreq Yes synonymous T Thr [T] 3 202
contig reference C Thr [T] 3 202
exon_7 26250517 1098 rs9658163 0.003 byClusterwithHapMapFreq Yes synonymous T Phe [F] 3 263
contig reference C Phe [F] 3 263
exon_8 26252013 1542 rs9658166 0.003 byClusterwithHapMapFreq Yes synonymous T Thr [T] 3 411
contig reference C Thr [T] 3 411

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .