Mouse To Human Homology Region Map, Chromosome 6

Mouse To Human Homology Region Map, Chromosome 6

Cross Mouse Locus Mouse Gene Human Chr. Human Gene In Situ Method RH Map Genethon Map Homology Group

b S Por 7 POR 7q11.2 76

0.1 Ica1 7 ICA1 7q21-q31 76

0.5 Pon1 7 PON1 7q21-q22 P 76

0.5 Pon3 7 PON3 7q21-q22 76

1.5 Pon2 7 PON2 7q21-q22 76

0.7 Cola2 7 COL1A2 7q21.3-q22.1 P,R,C,G A005A20 100-105 76

a 5.0 AA154701(a) 7 ASNS 7 P 76

5.0 Tac1 7 NKNA 7q21.3-q22.1 76

a, b 6.0 Met 7* MET 7q31 P,G 80

7.0 Kcnd2 7* KCND2 7q 80

b 6.2 Wnt2 7* WNT2 7q31 R WI-7597 121-130 80

7.5 Cftr 7* CFTR 7q31.3 P,R,G* SHGC-9783 121-130 80

8.5 Fln2 7* FLN2 7q32-q35 80

b 10.0 Cpa 7* CPA1 7q32 G 80

9.0 Pax4 7* PAX4 7q22-qter P 80

10.5 Lep 7* LEP 7q32 P 80

b 11.5 Cald1 7* CALD1 7q33-q34 80

b 13.5 Ptn 7* PTN 7q33-34 P 80

c 16.0 Hbnf 7* HBNF 7q32-qter 80

b 15.5 Braf2 7* BRAF 7q34 80

20.5 Nedd2 7* NEDD2 7q34-q35 80

20.5 Tbxas1 7* TBXAS1 7q34-q35 P 80

b 20.5 Try1 7* PRSS1 7q32-qter 80

a, b, c 20.5 Tcrb 7* TCRB 7q35 P,R,G SGC35595 149-157 80

22.5 Clc1 7* CLCN1 7q32-qter P 80

22.0 Npy 7 NPY 7pter-q22 P 71

a 26.0 Ggc 7 GCTG 7pter-p14 71

b 26.3 Hoxa 7 HOXA1 7p15-p14 P,R SGC356668 38-40 71

26.3 Hoxa4 7 HOXA4 7p15-p14 71

26.3 Hoxa5 7 HOXA5 7p15-p14 71

26.3 Hoxa6 7 HOXA6 7p15-p14 71

26.3 Hoxa7 7 HOXA7 7p15-p14 71

26.3 Hoxa9 7 HOXA9 7p15-p14 R U41813 40-42 71

26.3 Hoxa10 7 HOXA10 7p15-p14 71

26.3 Hoxa11 7 HOXA11 7p15-p14 R SGC33814 38-40 71

26.3 Evx1 7 EVX1 7p15-p14 P 71

26(g) Ghrhr 7 GHRHR 7p14 R SGC35683 42-49 71

27.0 Aqp1 7 AQP 7p14 R SHGC-12410 48-55 71

30.0 Igkrs 2 IGKDEL 2q11-q13 12

a, b 30.0 Igk 2 IGK 2p12 12

30.0 Fabpl 2 FABP1 2p11 12

30.5 Cd8b 2 CD8B1 2p12 R SHGC-10730 111-115 12

a 30.5 Cd8a 2 CD8A 2p12 R,G WI-9098 115-118 12

b 31.0 Sftp3 2 SFTP3 2p R WI-8376 107-111 12

34.5 Catna2 2 CTNNA2 2p12-2p11.1 R WI-7682 107-111 12

35.0 Aup1 2 AUP1 2p13 12

35.0 Actg2 2 ACTG2 2p13 R WI-5987 92-95 12

35.5 Add2 2 ADD2 2 12

36.5 Egr4 2 EGR4 2p13 12

a 38.0 Mad 2 MAD 2p13-p12 R SHGC-9689 91-95 12

b 38.0 Tgfa 2 TGFA 2p13 R,G SHGC-12714 92 12

38.0 Anx4 2 ANX4 2p13 R SHGC-13626 91-92 12

40.0 Mitf 3 MITF 3p14.1-p12.2 R WI-7914 101-108 28

a 38.5(g) Taut 3* SCL6A6 3p26-p24 R SHGC-10832 33-35 22

43.0 Trh 3 TRH 3 21

43.5 Pang 3 PANG 3p 21

50(g) Itpr1 3 ITPR1 3p R SHGC-12613 4-12 21

c 47.0 Il5ra 3 IL5RA 3p24-p26 R SHGC-11218 8-16 21

48.0 Atp2b2 3 ATP2B2 3 R SHGC-12699 23-30 21

49.0 Hrh1 3 HRH1 3p21-14 R SHGC-12045 23-30 21

49.0 Syn2 3 SYN2 3p 21

50.0 D6H3S18 3 D3S18 3p26.1 21

52.5 Sec13rs-1 3 SEC13R 3p24-p25 21

a, b 52.5 Raf1 3 RAF1 3p25 R,G WI-7071 30-33 21

53.0 Pparg 3 PPARG 3p25 21

51.5(g) Rho 3* RHO 3q21.3-24 G,P,R SGC31114 143-148 31

S Rpn1 3* RPN1 3q21-q25 R SHGC-10822 143-148 31

b 53.2 Alox5 10 ALOX5 10q11.2 R R52945 68-72 102

a, b 53.2 Ret 10 RET 10q11.2 R,G X53044 68-72 102

b 54.5 M6pr 12 M6PR 12 R stSG317 16-22 120

55.0 Rad52 12 RAD52 12p13.3 120

b 55.0 Glut3 12 SLC2A3 12p13.3 120

56.0 Gapd 12 GAPD 12p13 120

56.0 Syb1 12 SYB1 12p13.3-p11.1 120

b 56.0 Tpi 12 TPI1 12p13 X 120

S Mglap 12 MGP 12p 120

a 57.0 Cd9 12 CD9 12p13 R SHGC-11141 15-21 120

a, b 57.0 Cd4 12 CD4 12p12 R,X,G A007D38 15-24 120

a, b, c 589(g) Hcph 12 PTPN6 12p13 X 120

b 57.0 Cd27 12 CD27 12p13 R WI-7129 13-21 120

57.0 Nol1 12 NOL1 12p13 120

b 57.0 Tnfr1 12 TNFR1 12p13 X 120

58.0 Scnn1a 12 SCNN1 12 120

b 59.0 Vwf 12 VWF 12p13.3 R,X,G WI-6010 13-21 120

b, c 59.0 Kcna1 12 KCNA1 12p13 120

b 59.0 Kcna5 12 KCNA5 12p13 X 120

b 60.0 Ntf3 12* NTF3 12p13 121

b 60.0 Ccnd2 12* CCND2 12p13 121

b 60.0 Fgf6 12* FGF6 12p13.3 121

60.0 Rad52 12* RAD52 12p13.3 121

S A2m 12* A2M 12p12.3-p13.3 X,G 121

b 60.0 Cd69 12* CD69 12p13-p12 R,X WI-9214 13-21 121

60.0 Siat8a 12* SIAT8 12p12.1-11.2 121

62.0 Iapp 12* IAPP 12p12.3-p12.1 R SGC35306 31-36 121

62.0 Ldh2 12* LDHB 12p12.2-p12.1 R SHGC-12682 37-48 121

63.0 Prp 12* PRH1 12p13.2 121

64.5 Grin2b 12* GRIN2B 12p12 121

67.0 Guc2c 12* GUC2c 12p12 121

70.0 Lmo3 12* LMO3 12p13 121

70.0 Recgl 12* RECQL RECQL 121

a 73.0 Pthlh 12* PTHLH 12p12.1-p11.2 R WI-9193 37-53 121

b 73.0 Rbtn3 12* RBTNL2 12p13 X 121

74.5 D6Ucla1e 12* D12S274E 12p13.3 121

74.0 Krag 12* KRAG 12p11.2 121

a, b, c 74.0 Kras2 12* KRAS2 12p12.1 X,G* 121

Cross	Mouse Locus	Mouse Gene	Human Chr.	Human Gene	In Situ	Method	RH Map	Genethon Map	Homology Group
b	S	Por	7	POR	7q11.2				76
	0.1	Ica1	7	ICA1	7q21-q31				76
	0.5	Pon1	7	PON1	7q21-q22	P			76
	0.5	Pon3	7	PON3	7q21-q22				76
	1.5	Pon2	7	PON2	7q21-q22				76
	0.7	Cola2	7	COL1A2	7q21.3-q22.1	P,R,C,G	A005A20	100-105	76
a	5.0	AA154701(a)	7	ASNS	7	P			76
	5.0	Tac1	7	NKNA	7q21.3-q22.1				76
a, b	6.0	Met	7*	MET	7q31	P,G			80
	7.0	Kcnd2	7*	KCND2	7q				80
b	6.2	Wnt2	7*	WNT2	7q31	R	WI-7597	121-130	80
	7.5	Cftr	7*	CFTR	7q31.3	P,R,G*	SHGC-9783	121-130	80
	8.5	Fln2	7*	FLN2	7q32-q35				80
b	10.0	Cpa	7*	CPA1	7q32	G			80
	9.0	Pax4	7*	PAX4	7q22-qter	P			80
	10.5	Lep	7*	LEP	7q32	P			80
b	11.5	Cald1	7*	CALD1	7q33-q34				80
b	13.5	Ptn	7*	PTN	7q33-34	P			80
c	16.0	Hbnf	7*	HBNF	7q32-qter				80
b	15.5	Braf2	7*	BRAF	7q34				80
	20.5	Nedd2	7*	NEDD2	7q34-q35				80
	20.5	Tbxas1	7*	TBXAS1	7q34-q35	P			80
b	20.5	Try1	7*	PRSS1	7q32-qter				80
a, b, c	20.5	Tcrb	7*	TCRB	7q35	P,R,G	SGC35595	149-157	80
	22.5	Clc1	7*	CLCN1	7q32-qter	P			80
	22.0	Npy	7	NPY	7pter-q22	P			71
a	26.0	Ggc	7	GCTG	7pter-p14				71
b	26.3	Hoxa	7	HOXA1	7p15-p14	P,R	SGC356668	38-40	71
	26.3	Hoxa4	7	HOXA4	7p15-p14				71
	26.3	Hoxa5	7	HOXA5	7p15-p14				71
	26.3	Hoxa6	7	HOXA6	7p15-p14				71
	26.3	Hoxa7	7	HOXA7	7p15-p14				71
	26.3	Hoxa9	7	HOXA9	7p15-p14	R	U41813	40-42	71
	26.3	Hoxa10	7	HOXA10	7p15-p14				71
	26.3	Hoxa11	7	HOXA11	7p15-p14	R	SGC33814	38-40	71
	26.3	Evx1	7	EVX1	7p15-p14	P			71
	26(g)	Ghrhr	7	GHRHR	7p14	R	SGC35683	42-49	71
	27.0	Aqp1	7	AQP	7p14	R	SHGC-12410	48-55	71
	30.0	Igkrs	2	IGKDEL	2q11-q13				12
a, b	30.0	Igk	2	IGK	2p12				12
	30.0	Fabpl	2	FABP1	2p11				12
	30.5	Cd8b	2	CD8B1	2p12	R	SHGC-10730	111-115	12
a	30.5	Cd8a	2	CD8A	2p12	R,G	WI-9098	115-118	12
b	31.0	Sftp3	2	SFTP3	2p	R	WI-8376	107-111	12
	34.5	Catna2	2	CTNNA2	2p12-2p11.1	R	WI-7682	107-111	12
	35.0	Aup1	2	AUP1	2p13				12
	35.0	Actg2	2	ACTG2	2p13	R	WI-5987	92-95	12
	35.5	Add2	2	ADD2	2				12
	36.5	Egr4	2	EGR4	2p13				12
a	38.0	Mad	2	MAD	2p13-p12	R	SHGC-9689	91-95	12
b	38.0	Tgfa	2	TGFA	2p13	R,G	SHGC-12714	92	12
	38.0	Anx4	2	ANX4	2p13	R	SHGC-13626	91-92	12
	40.0	Mitf	3	MITF	3p14.1-p12.2	R	WI-7914	101-108	28
a	38.5(g)	Taut	3*	SCL6A6	3p26-p24	R	SHGC-10832	33-35	22
	43.0	Trh	3	TRH	3				21
	43.5	Pang	3	PANG	3p				21
	50(g)	Itpr1	3	ITPR1	3p	R	SHGC-12613	4-12	21
c	47.0	Il5ra	3	IL5RA	3p24-p26	R	SHGC-11218	8-16	21
	48.0	Atp2b2	3	ATP2B2	3	R	SHGC-12699	23-30	21
	49.0	Hrh1	3	HRH1	3p21-14	R	SHGC-12045	23-30	21
	49.0	Syn2	3	SYN2	3p				21
	50.0	D6H3S18	3	D3S18	3p26.1				21
	52.5	Sec13rs-1	3	SEC13R	3p24-p25				21
a, b	52.5	Raf1	3	RAF1	3p25	R,G	WI-7071	30-33	21
	53.0	Pparg	3	PPARG	3p25				21
	51.5(g)	Rho	3*	RHO	3q21.3-24	G,P,R	SGC31114	143-148	31
	S	Rpn1	3*	RPN1	3q21-q25	R	SHGC-10822	143-148	31
b	53.2	Alox5	10	ALOX5	10q11.2	R	R52945	68-72	102
a, b	53.2	Ret	10	RET	10q11.2	R,G	X53044	68-72	102
b	54.5	M6pr	12	M6PR	12	R	stSG317	16-22	120
	55.0	Rad52	12	RAD52	12p13.3				120
b	55.0	Glut3	12	SLC2A3	12p13.3				120
	56.0	Gapd	12	GAPD	12p13				120
	56.0	Syb1	12	SYB1	12p13.3-p11.1				120
b	56.0	Tpi	12	TPI1	12p13	X			120
	S	Mglap	12	MGP	12p				120
a	57.0	Cd9	12	CD9	12p13	R	SHGC-11141	15-21	120
a, b	57.0	Cd4	12	CD4	12p12	R,X,G	A007D38	15-24	120
a, b, c	589(g)	Hcph	12	PTPN6	12p13	X			120
b	57.0	Cd27	12	CD27	12p13	R	WI-7129	13-21	120
	57.0	Nol1	12	NOL1	12p13				120
b	57.0	Tnfr1	12	TNFR1	12p13	X			120
	58.0	Scnn1a	12	SCNN1	12				120
b	59.0	Vwf	12	VWF	12p13.3	R,X,G	WI-6010	13-21	120
b, c	59.0	Kcna1	12	KCNA1	12p13				120
b	59.0	Kcna5	12	KCNA5	12p13	X			120
b	60.0	Ntf3	12*	NTF3	12p13				121
b	60.0	Ccnd2	12*	CCND2	12p13				121
b	60.0	Fgf6	12*	FGF6	12p13.3				121
	60.0	Rad52	12*	RAD52	12p13.3				121
	S	A2m	12*	A2M	12p12.3-p13.3	X,G			121
b	60.0	Cd69	12*	CD69	12p13-p12	R,X	WI-9214	13-21	121
	60.0	Siat8a	12*	SIAT8	12p12.1-11.2				121
	62.0	Iapp	12*	IAPP	12p12.3-p12.1	R	SGC35306	31-36	121
	62.0	Ldh2	12*	LDHB	12p12.2-p12.1	R	SHGC-12682	37-48	121
	63.0	Prp	12*	PRH1	12p13.2				121
	64.5	Grin2b	12*	GRIN2B	12p12				121
	67.0	Guc2c	12*	GUC2c	12p12				121
	70.0	Lmo3	12*	LMO3	12p13				121
	70.0	Recgl	12*	RECQL	RECQL				121
a	73.0	Pthlh	12*	PTHLH	12p12.1-p11.2	R	WI-9193	37-53	121
b	73.0	Rbtn3	12*	RBTNL2	12p13	X			121
	74.5	D6Ucla1e	12*	D12S274E	12p13.3				121
	74.0	Krag	12*	KRAG	12p11.2				121
a, b, c	74.0	Kras2	12*	KRAS2	12p12.1	X,G*			121

Human/Mouse Homology Mapping Methods

Method	Description
C	High-resolution cytogenetic methods
G	Genetic linkage mapping
G*	Genetic mapping, with disagreements between genetic and physical map resolved in favor of physical map
L	Long-range restriction site mapping
P	Multiple physical methods, including YAC and cosmid contigs
R	Radiation hybrid mapping
X	Multiple sources of high-resolution data

Gene Notes:

Key	Description
a	Gene Bank Accession Number for Mouse EST
b	Gene order has been changed from that shown in the chromosome committee reports or online databases, as required by high-resolution human physical mapping data; these data also indicate a probable difference between human and mouse organization, e.g. a small inversion in one species
g	Mouse gene order has been changed slightly to conform with human gene order in the absence of conflicting high resolution data
y	Position has been changed from that reported in chromosome committee report or or Mouse Genome Database based on additional data or review of previous data
p	Different sources of high resolution mapping data give conflicting positions
r	Difference between position in inbred mice vs. Mus spretus
u	This is a UniGene designation, given since no gene symbol has been assigned. Note: some of these designations may be retired.

Mouse Locus Notes

The notation S in the Mouse Locus column indicates a gene that is syntenic, but for which there is not enough data to assign a precise position.

Cross Information

The cross column indicates which laboratory mapped a given cross.

a - Duke/Davis cross

b - Frederick cross

c - Jackson Lab cross

RH Notes

This field contains the marker identification used in Radiation Hybrid Mapping. These hyperlinks will connect the user to the Gene Map of the Human Genome. Subsequent hyperlinks on the marker will provide marker details and hyperlink to the actual Human Gene Map region (by selecting the interval defined by the Genethon Map loci intervals). Therefore the user can rapidly obtain information on ESTs that have

Color Key for Homology Map

Human Chr.	Human Chr.	Human Chr.	Human Chr.	Human Chr.	Human Chr.
1	2	3	4	5	6
7	8	9	10	11	12
13	14	15	16	17	18
19	X

The asterisk character ('*') is used to indicate a different region of homology on the same human chromosome.

A question mark ('?') indicates that the authors are uncertain that this region is truly homologous.