NCBI GenBank

Human to Mouse Homology Region Map, Chromosome 9

How to use this Resource

RH Map Genethon Map Method In Situ Human Gene Mouse Chr. Mouse Gene Mouse Locus Cross Homology Group
SHGC-12535 0 R 9p24 VLDLR 19 Vldlr 20.0 c 91
9p24-p23 SNF2L2 19 Snf2l2 S(y) 91
9p24 JAK2 19 Jak2 24.0 91
SGC35386 16-20 R 9p23 TYRP1 4 Tyrp1 38(g) b 92
WI-9020 27-32 R 9p22 IFNA 4 Ifa 42.6 a, b, c 92
G 9p22 IFNB 4 Ifb 42.6 92
9p21 TEK 4 Tek 43.6 b 92
9p24-p13 AK3 4 Ak3 47.6(g) 92
9p22-q32 ACO1 4* Aco1 20.9 93
WI-7677 57-59 R 9p13 PAX5 4* Pax5 20.7 93
9p13 CNTFR 4* Cntfr 19.9 93
G 9p13 GALT 4* Galt 19.9 93
9p13 GGTB2 4* Ggtb 18.6 93
9p21 D9S3 4* D4H9S3E 15.9 93
SGC35540 53-57 R 9p13 IL11RA 4* Etl2 12.7 93
9p21-p12 RMRP 4* Rmrp S 93
SHGC-12349 57-68 R 9q11-q22 ANX1 19* Lpc1 18.0 c 94
stSG4572 65-68 R 9q21 ALDH1 19* Aldh1 21(y) 94
9q21 RLN1 19* Rln S(y) 94
SGC31294 77-93 R 9p21 CDKN2A 4 Cdkn2a 42.6 95
9p21 CDKN2B 4 Cdkn2b 42.6 95
SHGC-12637 86-93 R 9q22.3 CTSL 13 Ctsl 30(y)(g) 96
9q22.3 FACC 13 Facc 36.0 96
9q2 SYK 13 Syk 37.0 96
9q21.3-q22 GAS1 13 Gas1 37.0 a 96
9q22 TMOD 4* Tmod 21.5 97
WI-9212 103-104 R 9q22.3 XPA 4* Xpa 21.5 c 97
stSG1311 104-109 R 9q22.3-q31 ALDOB 4* Aldo2 22.3 97
9p CD72 4* Cd72 22.5 97
9q22-q31 ABC1 4* Abc1 23.1 97
9q31(g) TXN(g) 4* Txn(g) 24.6 a 97
9q32 TAL2 4* Tal2 24.7 b 97
9q32-q33 AMBP 4* Ambp 30.6 97
9q32-q34 ALAD 4* Lv 30.6 97
9q TZN 4* Zfp37 30.6 97
9q32 ORM1 4* Orm1 31.4 97
9q32 ORM2 4* Orm2 31.4 97
9q32 ORM3 4* Orm3 31.4 97
SGC35708 124-125 R 9q33.1 PAPPA 4* Pappa 32.2 97
G 9q HXB 4* Tnc 32.2 b 97
WI-9258 124-125 R 9q33 CD30LG 4* Cd30l 32.2 b 97
9q34.2-q34 PAEP 2 Paep 73.0 98
9 PTGS1 2* Ptgs1 29.0 99
9q34 LCN2 2* Lcn2 27.0 99
9q33-q34 GGTA1 2* Ggta1 25.0 99
G 9q33 GSN 2* Gsn 24.5 b, c 99
9q34 EPB72 2* Epb7.2 24.0 c 99
9q33 FTZF1 2* Ftzf1 23.5 a 99
WI-12734 130 R 9q33 C5 2* Hc 23.5 b, c 99
WI-6005 136-141 R 9q GRP78 2* Grp78 22.5 b, c 99
9q33-q34 PBX3 2* Pbx3 22.0 c 99
G 9q34.1-q34.2 AK1 2* Ak1 21.6 c 99
9q34-qter ENG 2* Eng 21.4 99
9cen-q34 FPGS 2* Fpgs 21.2 99
9q34 D9S46E 2* D2H9S46E 21.0 b 99
G 9q34.1 ABL 2* Abl 21.0 b, c 99
G 9q34.1 ASS 2* Ass1 20.0 b 99
SHGC-278 136-144 R 9q33-q34 SPTAN1 2* Spna2 18.0 a, b, c 99
9q34.3 CEL 2* Cel 17.0 99
9q34 RXRA 2* Rxra 17.0 a 99
9q34 COL5A1 2* Col5a1 17.0 c 99
9q34 RXRA 2* Rxra 17.0 a, c 99
9q34.3 DBH 2* Dbh 15.5 99
9q34.3 NOTCH1 2* Notch1 15.0 b, c 99
9q34.1 SURF5 2* Surf5 15.5 99
stSG1371 142-148 R 9q33-q34 SURF1 2* Surf1 15.5 99
9q34 VAV2 2* Vav2 15.3 99
9q34.3 NOTCH1 2* Notch1 15.0 99
9q34 NPS1 2* us 14.0 99
9q34.2-q34.3 PTGDS 2* Ptgds 12.9 99
9q34 ABC2 2* Abc2 12.6 99
9q C8G 2* C8g 12.3 99
9q34.3 GRIN1 2* Grin1 12.0 a 99

Human/Mouse Homology Mapping Methods

MethodDescription
CHigh-resolution cytogenetic methods
GGenetic linkage mapping
G*Genetic mapping, with disagreements between genetic and physical map resolved in favor of physical map
LLong-range restriction site mapping
PMultiple physical methods, including YAC and cosmid contigs
RRadiation hybrid mapping
XMultiple sources of high-resolution data

Gene Notes:

KeyDescription
aGene Bank Accession Number for Mouse EST
bGene order has been changed from that shown in the chromosome committee reports or online databases, as required by high-resolution human physical mapping data; these data also indicate a probable difference between human and mouse organization, e.g. a small inversion in one species
gMouse gene order has been changed slightly to conform with human gene order in the absence of conflicting high resolution data
yPosition has been changed from that reported in chromosome committee report or or Mouse Genome Database based on additional data or review of previous data
pDifferent sources of high resolution mapping data give conflicting positions
rDifference between position in inbred mice vs. Mus spretus
uThis is a UniGene designation, given since no gene symbol has been assigned. Note: some of these designations may be retired.

Mouse Locus Notes

The notation S in the Mouse Locus column indicates a gene that is syntenic, but for which there is not enough data to assign a precise position.

Cross Information

The cross column indicates which laboratory mapped a given cross.

a - Duke/Davis cross

b - Frederick cross

c - Jackson Lab cross

RH Notes

This field contains the marker identification used in Radiation Hybrid Mapping. These hyperlinks will connect the user to the Gene Map of the Human Genome. Subsequent hyperlinks on the marker will provide marker details and hyperlink to the actual Human Gene Map region (by selecting the interval defined by the Genethon Map loci intervals). Therefore the user can rapidly obtain information on ESTs that have

Color Key for Homology Map

Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr.
1 2 3 4 5 6
7 8 9 10 11 12
13 14 15 16 17 18
19 20 21 22 X

The asterisk character ('*') is used to indicate a different region of homology on the same mouse chromosome.

A question mark ('?') indicates that the authors are uncertain that this region is truly homologous.