NCBI GenBank

Human to Mouse Homology Region Map, Chromosome 1

How to use this Resource

RH Map Genethon Map Method In Situ Human Gene Mouse Chr. Mouse Gene Mouse Locus Cross Homology Group
1p36 TXGP1 4 Ox40 79.4 b 1
stSG1939 0-6 R 1p36-p31.2 GNB1 4 Gnb1 79.4 b 1
C 1p36.3 CDC2L1 4 Cdc2l1 79.4 1
C,P,G 1p36.3 ENO1 4 Eno1 79.0 1
WI-12099 16-22 R 1 10958(u) 4 AA165858(a) 78.8 a 1
C,G 1p36.3 PGD 4 Pgd 77.6 1
SHGC31494 22-36 R,C,P 1p36.3-p36.2 TNFR2(b) 4 Tnfr2(b) 75.5 b 1
SHGC-9861 22-36 R,P 1p36.2 CD30 4 Cd30 75.8 1
SHGC-30062 22-32 R 1p36.3-p36.2 PLOD 4 Plod 76.5 1
C,P,G 1p36.2 NPPA 4 Nppa 76.5 a, b 1
1p36.3-p36.2 NPPB 4 Nppb 76.5 1
M59371 36-49 R 1 ECK 4 Eck 73.2 1
C 1p36.1 HSPG2 4 Hspg2 71.4 1
G 1p35 ALPL 4 Akp2 70.2 a 1
C,P 1p36.1 PAX7 4 Pax7 69.0 1
G 1p35-p34 FUCA1 4 Fuca 67.2 1
1p35 ELP1 4 Elp1 67.2 1
WI-7909 39-54 R 1p35 PLA2G2A 4 Pla2g2a 66.6 1
1p35 PLA2G2C 4 Pla2g2c 66.6 1
1p35 PLA2G5 4 Pla2g5 66.6 1
1p36.3-p34.3 HTR1D 4 Htr1da 66.2 1
WI-16767 49-52 R 1p36.3-p34.1 C1QB 4 C1qb 66.1 1
stSG8106 49-52 R 1 C1QC 4 C1qc 66.1 1
SHGC-13801 50-52 R 1 C1QA 4 C1qa 66.1 1
1p36.1 ID3 4 Idb3 66.0 b 1
C 1p36.1-p35 LAP18 4 Lag 65.7 b 1
1p36 AML2 4 Cbfa3 65.7 1
SHGC-9621 52-54 R 1p36.1 ERK 4 Erk 65.7 1
SHGC-11459 50-54 R 1p36.1-p35 HMGCL 4 Hmgcl 65.6 1
1p36.3-p32 AGRN 4 Agrn S 1
1p36.3-p36.2 PLOD 4 Plod 65.0 1
1p36.1-1p34.3 OPRD1 4 Oprd1 64.8 1
1p36.1-p35 MFAP2 4 Magp S 1
C,G 1p36.1 FGR 4 Fgr 64.6 b 1
1p36.2-p35 SLC9A1 4 Slc9a1 64.6 1
G 1p36.1-p35 HMG17 4 Hmg17 62.2 1
1p36-q31 FABP3 4 Fabph1 61.0 1
1p IL14 4 Il14 59.0 a 1
1p35-p32 LCK 4 Lck 59.0 a, b, 1
1p34.3-p32.3 COL8A2 4 Col8a2 57.2 a 1
1p33-34 GRIK3 4 Grik3 57.7 a 1
1p36-q12 GJA4 4 Gja4 57.6 b 1
1p35-p34.3 CSFGR 4 Csfgr 57.5 b 1
1p34 MPL 4 Mpl 56.5 c 1
WI-7196 63-73 R,G 1p34 MYCL 4 Lmyc1 55.0 a, b 1
SGC35672 66-73 R 1p32.3-p33 COL9A2 4 Col9a2 53.0 1
1p35-p34 GUCA2 4 Guca2 52.9 1
G 1p35-p31.3 SLC2A1 4 Glut1 52.0 a, b, 1
1 SSBP 4 Ssbp 52.0 b 1
1p32-p22 IPP 4 Ipp 51.5 1
1p34 UROD 4 Urod 50.6 1
1p34 AK2 4 Ak2 S 1
1p31 TAL1 4 Tal1 49.5 b 1
R 1p31 C8B 4 C8b 49.4 b 1
1p32-p22.1 D1S85 4 D4H1S85 48.1 1
1p31 PDE4B 4 Pde4b(g) 46.8 1
1p32.3-31.3 JAK1 4 Jak1 46.3 1
WI-9183 95-102 R,G 1p32-33 PGM1 4 Pgm2 45.5 b 1
1p34-p12 CYP4B1 4 Cyp4a 45.4 b 1
1p32-p31 JUN 4 Jun 44.6 a, b 1
SHGC-15189 97-99 R 1 12172(u) 4 AA107359(a) 43(g) a 1
SHGC-12893 100-106 R 1p31.2 PTGER3 3 Ptgerep3 82.0 a 2
1p31 RPE65 3 Rpe65 78.1 2
SHGC-12571 106-110 R 1p31.1 PTGFR 3 Ptgfr 75.8 a 2
1p22 GFI1 5 Gfi1 56.0 b 3
WI-9122 129-132 R 1 1649(u) 5 AA124718(a) 56.0 a 3
25505 131 R 1 25505(u) 5 AA155193(a) 56.0 a 3
1p22-p21 PXMP1 3* Pxmp1 56.6 b 4
UTR-9667 140-143 R 1 COL11A 3* Col11a1 53.1 4
1p31 VCAM1 3* Vcam1 50.8 b 4
G 1p22-p21 F3 3* Cf3 50.0 4
G 1p21 AMY2B 3* Amy2 50.0 a, b 4
SGC32938 140-143 R 1p21 AMY1 3* Amy1 50.0 4
A006D12 146-147 R 1 AMPD2 3* Ampd2 50(y) 4
1p21 KCNC4 3* Kcnc4 49(y) 4
SHGC-9869 146-151 R 1p13.3 KCNA3 3* Kcna3 49(y) b 4
1p13 GNAT2 3* Gnat2 49.0 b 4
WI-9136 146-149 R 1p13 GNAI3 3* Gnai3 48.8 b 4
WI-9116 146-149 R 1p13-21 CSF1 3* Csfm 48,8 b 4
SHGC-12404 146-151 R 1p13-p12 CD53 3* Cd53 48.5 a,b 4
SHGC-141 146-151 R,P 1p13-p12 RAP1A 3* Rap1a 48.5 a,b 4
P,G 1p13 TSHB 3* Tshb 48.5 a, b, P 4
P,G 1p13 NRAS 3* Nras 48.5 a, b, P 4
SHGC-10159 153 R,P,G 1p13 NGFB 3* Ngfb 48.5 a, b, P 4
1p13 AMPD1 3* Ampd1 48.5 a, P 4
A001Z44 154-156 R,P 1p13 ATP1A1 3* Atpla1 48.4 a, P 4
D1S3476 156-160 R 1p13 CD2 3* Cd2 47.8(y) a, P 4
stSG98 156-160 R 1pter-q12 ARNT 3* Arnt 48.0 4
1q FCGR1 3* Fcgr1(g) 46.5(y) a 4
SHGC-10708 159-170 R, P 1q22-23 CD1 3* Cd1 46(y) a, P 4
1q23-31 NTRK1 3* Ntrk1 46.0 a, b 4
1q21 PKLR 3* Pklr 46.0 a 4
P,G 1q21-q23 MUC1 3* Muc1 44.8(g) a 4
1p36-q12 GJA5 3* Gja5 45.6 b 4
SGC35274 156-160 R 1p11-13 HSDB3 3* Hsd3b 45.3 4
C,P 1q12-21 H3F2 3* Hist2 45.2 b 4
M81457 159-164 R,C,P 1q21-q22 S100A4 3* Capl(g) 43.6 4
C,P 1q21-q25 S100A6 3* Cacy(g) 43.6 a 4
SGC34987 156-160 R 1q21 MCL1 3* Mcl1 43.6 a 4
WI-7217 160-164 R,C,P 1q21 FLG 3* Flg 42.6 b 4
1q24-q31 FPSL 3* Fpsl-rs1 42.6 a 4
1q BGLAP 3* Bglap1 42.6 a, c 4
P 1q21-q23 THBS3 3* Thbs3 42.6 a 4
M61120 159-164 R,C,P 1q21 Lor 3* Lor 42.1 b 4
1q21 IL6R 3* Il6r 42.1 b 4
P 1q21 GBA 3* Gba 41.7 a 4
1q22-24 SKV 4 Ski 78.9 a, b ?
SHGC-9827 159-170 R,P,G 1q21-23 SPTA1 1 Spna1 95.2 a, b, P 5
M11725 170-173 R,P,G 1q21-q23 CRP 1 Crp 94.2 a, P 5
SHGC-10941 170-172 R,P 1q21-q23 APCS 1 Sap 94.2 a, P 5
SHGC-12658 170-181 R,P 1q21-q23 FCER1A 1 Fcer1a 94.2 a, P 5
SGC31641 170-173 R,P,G 1q21-q22 ATP1A2 1 Atp1a2 94.2 a, P 5
1q21-q23 USF1 1 Usf1 93.5 5
1q22 NHLH1 1 Nhlh1 93.4 5
P 1q21.3-q22 LY9 1 Ly9 93.3 a, P 5
WI-8971 170-173 R,P 1q21.3-q22 CD48 1 Cd48 93.3 a, P 5
1q22-q23 USF1 1 Usf1 S 5
SHGC-12422 175-179 R,P 1q23 FCER1G 1 Fcer1g 93.3 a, P 5
SHGC-017 175-179 R,P,G 1q21-q23 APOA2 1 Apoa2 92.6 a, c, P 5
P 1q21-q23 MPZ 1 Mpp 92.4 a, P 5
SGC35267 173-181 R,P 1q21-23 CD32 1 Fcgr2 92.3 a, P 5
stSG71 173-181 R,P,G 1q21-q23 FCGR3A,B 1 Fcgr3 92.3 a, P 5
1q SYT2 1 Syt2 90.0 5
WI-15938 173-181 R,P 1q23-25 RXRG 1 Rxrg 88.1 a 5
P 1q23-q25 PBX1 1 Pbx1 88.1 a, b 5
P 1q22-q25 POU2F1 1 Pou2f1 87.2 a, b, P 5
J04132 183-186 R,P 1q22-q25 CD3z 1 Cd3z 87.2 a, P 5
SGC35495 187-193 R 1 LPTN 1 Lptn 87.0 5
P 1q22-q25 ATP1B1 1 Atp1b1 86.8 a, P 5
M14335 186-193 R,P 1q21-q25 F5 1 Cf5 86.6 a, P 5
SHGC-17253 186-193 P 1q21-q25 SELP 1 Selp 86.6 a, P 5
WI-7045 187-193 R,P 1q21-q25 SELL 1 Sell 86.6 a, P 5
M30640 186-193 R,P 1q22-q25 SELE 1 Sele 86.6 a, b, P 5
SHGC-11872 193-196 R,P 1q23 APT1LG1 1 Fasl 85.0 a, P 5
WI-7792 193-197 R,P 1q23 OX40L 1 Ox40l 84.9 a, b, P 5
atSG1405 197-199 R,P,G 1q23-q25.1 AT3 1 At3 84.6 a, b, P 5
1q24-q25 ABLL 1 Abll 82.1 a 5
1q25 SOAT 1 Acact 81.6 5
WI-8057 199-203 R,G 1q31 LAMC1 1 Lamc1 81.1 a, b 5
1q31 LAMC2 1 Lamc2 80.1 5
WI-7142 205-208 R 1q25.2-q25.3 PTGS2 1 Ptgs2 76.2 5
stSG402 204-208 R 1cen-q32 NCF2 1 Ncf2 76.1 5
SGC31488 213-216 R 1q32 HF1 1 Cfh 74.1 a 5
1q31-32 PTPRC 1 Ptprc 74.1 a, b 5
1q SYT2 1 Syt2 73.5 5
1q31-q41 MYOG 1 Myog 72.3 b 5
1q25 PEPC 1 Pep3 71.0 5
1q25-q32 ATP2B2 1 Atp2b2 70.3 a 5
G 1q32 or 1q41 REN 1 Ren 69.9 a, b 5
1q32 EPRS 1 Qprs S 5
SHGC-11068 218-219 R 1q32 CACNL1A3 1 Cchl1a3 69.9 5
1 IL10 1 Il10 69.9 b 5
SHGC-11123 224-228 R,P,G 1q32 DAF 1 Daf 67.6 a 5
SHGC-9971 224-232 R,P 1q32 C4BP 1 C4bp 67.6 a 5
M26021 224-232 R,P,G 1q32 CR2 1* Cr2 106.6 a, P 6
X14358 224-232 R,P,G 1q32 CR1 1* Crry 106.6 a 6
WI-7685 225-232 R,P 1q32 CD34 1* Cd34 106.6 a, P 6
1q32 LAMB3 1* Lamb3 104.0 6
SHGC-31006 235-237 R 1q41-q42.1 HLX1 1* Hlx 101.5 b 6
WI-7576 242-246 R 1q41 TGFB2 1* Tgfb2 101.5 a, b 6
1q31-qter CHML 1* Chml 99.7 6
SGC30345 246-249 R,G 1q41-q42 ADPRT 1* Adprp 98.5 a 6
1p11-qter EPHX 1* Eph1 98.5 a 6
1q42.11-q42.13 RN5S 8 Rn5s S 7
WI-8965 249-251 R.P 1q41-qter AGT 8 Agt 68.0 7
1q42-43 RAB4A 8 Rab4a 67.5 7
SHGC-12727 246-256 R,P 1q42.1-q42.3 ACTA1 8 Actsk 67.0 a, b, c 7
SHGC-32758 246-272 R 1q34-1q43 LYST 13 Lyst 7.0 8
WI-7199 258-272 R 1q34-1q43 NID 13 Nid 7.0 a, b 8
1 RYR2 13 Ryr2 4.0 8

Human/Mouse Homology Mapping Methods

MethodDescription
CHigh-resolution cytogenetic methods
GGenetic linkage mapping
G*Genetic mapping, with disagreements between genetic and physical map resolved in favor of physical map
LLong-range restriction site mapping
PMultiple physical methods, including YAC and cosmid contigs
RRadiation hybrid mapping
XMultiple sources of high-resolution data

Gene Notes:

KeyDescription
aGene Bank Accession Number for Mouse EST
bGene order has been changed from that shown in the chromosome committee reports or online databases, as required by high-resolution human physical mapping data; these data also indicate a probable difference between human and mouse organization, e.g. a small inversion in one species
gMouse gene order has been changed slightly to conform with human gene order in the absence of conflicting high resolution data
yPosition has been changed from that reported in chromosome committee report or or Mouse Genome Database based on additional data or review of previous data
pDifferent sources of high resolution mapping data give conflicting positions
rDifference between position in inbred mice vs. Mus spretus
uThis is a UniGene designation, given since no gene symbol has been assigned. Note: some of these designations may be retired.

Mouse Locus Notes

The notation S in the Mouse Locus column indicates a gene that is syntenic, but for which there is not enough data to assign a precise position.

Cross Information

The cross column indicates which laboratory mapped a given cross.

a - Duke/Davis cross

b - Frederick cross

c - Jackson Lab cross

RH Notes

This field contains the marker identification used in Radiation Hybrid Mapping. These hyperlinks will connect the user to the Gene Map of the Human Genome. Subsequent hyperlinks on the marker will provide marker details and hyperlink to the actual Human Gene Map region (by selecting the interval defined by the Genethon Map loci intervals). Therefore the user can rapidly obtain information on ESTs that have

Color Key for Homology Map

Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr.
1 2 3 4 5 6
7 8 9 10 11 12
13 14 15 16 17 18
19 20 21 22 X

The asterisk character ('*') is used to indicate a different region of homology on the same mouse chromosome.

A question mark ('?') indicates that the authors are uncertain that this region is truly homologous.