NCBI C Toolkit Cross Reference

   /*  objblock.h
   * ===========================================================================
   *
   *                            PUBLIC DOMAIN NOTICE                          
   *               National Center for Biotechnology Information
   *                                                                          
   *  This software/database is a "United States Government Work" under the   
   *  terms of the United States Copyright Act.  It was written as part of    
   *  the author's official duties as a United States Government employee and 
  *  thus cannot be copyrighted.  This software/database is freely available 
  *  to the public for use. The National Library of Medicine and the U.S.    
  *  Government have not placed any restriction on its use or reproduction.  
  *                                                                          
  *  Although all reasonable efforts have been taken to ensure the accuracy  
  *  and reliability of the software and data, the NLM and the U.S.          
  *  Government do not and cannot warrant the performance or results that    
  *  may be obtained by using this software or data. The NLM and the U.S.    
  *  Government disclaim all warranties, express or implied, including       
  *  warranties of performance, merchantability or fitness for any particular
  *  purpose.                                                                
  *                                                                          
  *  Please cite the author in any work or product based on this material.   
  *
  * ===========================================================================
  *
  * File Name:  objblock.h
  *
  * Author:  James Ostell
  *   
  * Version Creation Date: 4/1/91
  *
  * $Revision: 6.1 $
  *
  * File Description:  Object manager for module GenBank-General,
  *                                       EMBL-General, PIR-General, SWISSPROT-General
  *
  * Modifications:  
  * --------------------------------------------------------------------------
  * Date     Name        Description of modification
  * -------  ----------  -----------------------------------------------------
  * 05-17-93 Schuler     pdbblock.class renamed pdpblock.pdbclass because
  *                      class is a C++ keyword.
  *
  *
  * $Log: objblock.h,v $
  * Revision 6.1  2000/04/29 19:51:02  kans
  * removed strange characters at end that prevented Mac compilation
  *
  * Revision 6.0  1997/08/25 18:49:30  madden
  * Revision changed to 6.0
  *
  * Revision 4.1  1997/06/19 18:40:57  vakatov
  * [WIN32,MSVC++]  Adopted for the "NCBIOBJ.LIB" DLL'ization
  *
  * Revision 4.0  1995/07/26 13:48:06  ostell
  * force revision to 4.0
  *
   * Revision 3.1  1995/05/15  21:22:00  ostell
   * added Log line
   *
  *
  *
  * ==========================================================================
  */
  
  #ifndef _NCBI_SeqBlock_
  #define _NCBI_SeqBlock_
  
  #ifndef _ASNTOOL_
  #include <asn.h>
  #endif
  #ifndef _NCBI_General_
  #include <objgen.h>
  #endif
  #ifndef _NCBI_Seqloc_
  #include <objloc.h>
  #endif
  
  #undef NLM_EXTERN
  #ifdef NLM_IMPORT
  #define NLM_EXTERN NLM_IMPORT
  #else
  #define NLM_EXTERN extern
  #endif
  
  #ifdef __cplusplus
  extern "C" {
  #endif
  
  /*****************************************************************************
  *
  *   loader
  *
  *****************************************************************************/
  NLM_EXTERN Boolean LIBCALL SeqBlockAsnLoad PROTO((void));
  
  /*****************************************************************************
  *
  *   PirBlock - PIR specific data elements
 *
 *****************************************************************************/
 typedef struct pirblock {
     Boolean had_punct;
     CharPtr host,
         source,
         summary,
         genetic,
         includes,
         placement,
         superfamily,
         cross_reference,
         date,
         seq_raw;
     ValNodePtr keywords;
     SeqIdPtr seqref;
 } PirBlock, PNTR PirBlockPtr;
 
 NLM_EXTERN PirBlockPtr LIBCALL PirBlockNew PROTO((void));
 NLM_EXTERN Boolean     LIBCALL PirBlockAsnWrite PROTO((PirBlockPtr pbp, AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN PirBlockPtr LIBCALL PirBlockAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN PirBlockPtr LIBCALL PirBlockFree PROTO((PirBlockPtr pbp));
 
 /*****************************************************************************
 *
 *   GBBlock - GenBank specific data elements
 *
 *****************************************************************************/
 typedef struct gbblock {
     ValNodePtr extra_accessions,
         keywords;
     CharPtr source,
         origin,
         date,
         div,
         taxonomy;
     DatePtr entry_date;
 } GBBlock, PNTR GBBlockPtr;
 
 NLM_EXTERN GBBlockPtr LIBCALL GBBlockNew PROTO((void));
 NLM_EXTERN Boolean    LIBCALL GBBlockAsnWrite PROTO((GBBlockPtr gbp, AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN GBBlockPtr LIBCALL GBBlockAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN GBBlockPtr LIBCALL GBBlockFree PROTO((GBBlockPtr gbp));
 
 /*****************************************************************************
 *
 *   SPBlock - SWISSPROT specific data elements
 *
 *****************************************************************************/
 typedef struct spblock {
     Uint1 _class;
     ValNodePtr extra_acc;
     Boolean imeth;
     ValNodePtr plasnm;
     SeqIdPtr seqref;
     ValNodePtr dbref;
     ValNodePtr keywords;
         NCBI_DatePtr created,
                 sequpd,
                 annotupd;
 } SPBlock, PNTR SPBlockPtr;
 
 NLM_EXTERN SPBlockPtr LIBCALL SPBlockNew PROTO((void));
 NLM_EXTERN Boolean    LIBCALL SPBlockAsnWrite PROTO((SPBlockPtr sbp, AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN SPBlockPtr LIBCALL SPBlockAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN SPBlockPtr LIBCALL SPBlockFree PROTO((SPBlockPtr sbp));
 
 /*****************************************************************************
 *
 *   EMBLBlock - EMBL specific data elements
 *
 *****************************************************************************/
 typedef struct emblxref {
         Uint1 _class;           
         CharPtr name;                   /* NULL if class used */
         ValNodePtr id;          /* ValNode->data.ptrvalue is an ObjectIdPtr */
         struct emblxref PNTR next;
 } EMBLXref, PNTR EMBLXrefPtr;
 
 typedef struct emblblock {
     Uint1 _class,
                 div;               /* 255 = not set */
         NCBI_DatePtr creation_date ,
                 update_date;
     ValNodePtr extra_acc;
     ValNodePtr keywords;
         EMBLXrefPtr xref;
 } EMBLBlock, PNTR EMBLBlockPtr;
 
 NLM_EXTERN EMBLBlockPtr LIBCALL EMBLBlockNew PROTO((void));
 NLM_EXTERN Boolean      LIBCALL EMBLBlockAsnWrite PROTO((EMBLBlockPtr ebp, AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN EMBLBlockPtr LIBCALL EMBLBlockAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN EMBLBlockPtr LIBCALL EMBLBlockFree PROTO((EMBLBlockPtr ebp));
 
 /*****************************************************************************
 *
 *       PRF-Block       - PRF specific data emements
 *                               by A.Ogiwara
 *****************************************************************************/
 typedef struct prfextsrc {
         CharPtr         host;
         CharPtr         part;
         CharPtr         state;
         CharPtr         strain;
         CharPtr         taxon;
 } PrfExtSrc, PNTR PrfExtSrcPtr;
 
 typedef struct prfblock {
         PrfExtSrcPtr    extra_src;
         ValNodePtr      keywords;
 } PrfBlock, PNTR PrfBlockPtr;
 
 NLM_EXTERN PrfBlockPtr  LIBCALL PrfBlockNew      PROTO((void));
 NLM_EXTERN Boolean      LIBCALL PrfBlockAsnWrite PROTO((PrfBlockPtr pbp, AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN PrfBlockPtr  LIBCALL PrfBlockAsnRead  PROTO((AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN PrfBlockPtr  LIBCALL PrfBlockFree     PROTO((PrfBlockPtr pbp));
 
 
 /*****************************************************************************
 *
 *       PDB-Block       - PDB specific data emements
 *
 *****************************************************************************/
 
 typedef struct pdbreplace {
         DatePtr date;
         ValNodePtr ids;
 }
 PdbRep, PNTR PdbRepPtr;
 
 typedef struct pdbblock {
         DatePtr deposition ;
         CharPtr pdbclass ;
         ValNodePtr compound ;
         ValNodePtr source ;
         CharPtr exp_method ;
         PdbRepPtr replace;
 }
 PdbBlock, PNTR PdbBlockPtr;
 
 NLM_EXTERN PdbBlockPtr  LIBCALL PdbBlockNew     PROTO((void));
 NLM_EXTERN Boolean      LIBCALL PdbBlockAsnWrite        PROTO((PdbBlockPtr pdbp, AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN PdbBlockPtr  LIBCALL PdbBlockAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp));
 NLM_EXTERN PdbBlockPtr  LIBCALL PdbBlockFree    PROTO((PdbBlockPtr pdbp));
 
 #ifdef __cplusplus
 }
 #endif
 
 #undef NLM_EXTERN
 #ifdef NLM_EXPORT
 #define NLM_EXTERN NLM_EXPORT
 #else
 #define NLM_EXTERN
 #endif
 #endif