|
NCBI Home IEB Home C Toolkit docs C++ Toolkit source browser C Toolkit source browser (2) |
NCBI C Toolkit Cross ReferenceC/make/readme.unx |
source navigation diff markup identifier search freetext search file search |
1 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3 DIRECTIONS for building the toolkit on UNIX platforms 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 5 6 7 ========================================================================== 8 || W A R N I N G !! 9 || That readme.unx file is valid only for new NCBI toolkit issued 10 || after April, 6, 1999 11 ========================================================================== 12 13 Building the NCBI toolkit 14 ----------------------------- 15 16 1) Take the sources of NCBI tookit at 17 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/ncbi.tar.Z 18 Extract this file to some empty directory, for example "toolkit" : 19 mkdir toolkit 20 cd toolkit 21 #assume that the file ncbi.tar.Z is already here 22 compress -d < ncbi.tar.Z | tar xf - 23 The platform-dependent config files are located in directory ncbi/platform/ 24 and you can modify them or make your own ports to different platforms. 25 26 2) you will see the file in ncbi/make: 27 28 (i) ./ncbi/make/makedis.csh 29 30 This file should actually do the make. 31 32 Normally, its output is trapped as 33 34 in case of bash or sh or zsh: 35 ./ncbi/make/makedis.csh 2>&1 | tee out.makedis.txt 36 in case of csh or tcsh 37 ./ncbi/make/makedis.csh |& tee out.makedis.txt 38 39 If there are problems with the make, this is the file which should be 40 sent to toolbox@ncbi.nlm.nih.gov 41 42 in addition, the output of 43 44 uname -a 45 46 should also be sent. 47 48 3) Errors relating to the 'internal/' directory can be ignored. It is normal 49 for outside users to see these messages. (We use the same makefiles, 50 internally, for the price of external users seeing these ignored errors, 51 we have only one set of makefiles to maintain for inside and outside of 52 NCBI.) 53 54 Karl Sirotkin Fri Jul 24 16:50:19 EDT 1998 55 56 57 4) There is some useful information about NCBI toolkit located at: 58 ftp://ftp.ncbi.nih.gov/toolbox/FAQ.html 59 60 5) Here is sample scenario to build NCBI toolkit on DEC Alpha with OSF/1 61 I'm using bash as login shell 62 63 Script started on Mon Jan 31 14:08:20 2000 64 > uname -a 65 OSF1 annie V4.0 878 alpha 66 > exec bash 67 bash-2.00$ PS1='\h|\w|\!> ' 68 annie|/work|502> mkdir toolbox 69 annie|/work|503> cd toolbox 70 annie|/work/toolbox|504> ftp ftp.ncbi.nih.gov 71 Connected to ftp.ncbi.nih.gov. 72 220-Welcome to the NCBI FTP Server (ftp.ncbi.nih.gov) 73 220- 74 220 ncbi FTP server (Version wu-2.5.0(1p1) Sat Aug 28 10:35:19 EDT 1999) ready. 75 Name (ftp.ncbi.nih.gov:coremake): ftp 76 331 Guest login ok, send your complete e-mail address as password. 77 Password: 78 230 Guest login ok, access restrictions apply. 79 Remote system type is UNIX. 80 Using binary mode to transfer files. 81 ftp> bin 82 200 Type set to I. 83 ftp> cd /toolbox/ncbi_tools 84 250 CWD command successful. 85 ftp> dir 86 200 PORT command successful. 87 150 Opening ASCII mode data connection for /bin/ls. 88 total 490 89 drwxrwsr-x 6 1042 506 512 Jan 24 23:38 . 90 drwxrwsr-x 8 1042 506 512 Sep 20 20:08 .. 91 lrwxrwxrwx 1 3755 506 12 Jan 24 23:38 CURRENT -> old/20000124 92 lrwxrwxrwx 1 3755 506 11 Oct 28 16:23 FAQ.html -> ../FAQ.html 93 drwxrws--- 2 4039 506 512 Oct 2 1998 LastToolKit 94 -rw-rw-r-- 1 3755 511 52019 May 13 1999 README 95 -rw-rw-r-- 1 3755 511 59692 May 13 1999 README.htm 96 -rw-r--r-- 1 3755 506 112063 Jan 27 1999 asnload.tar.Z 97 lrwxrwxrwx 1 3755 506 18 Oct 28 16:23 data.tar.Z -> CURRENT/data.tar.Z 98 drwxr-sr-x 2 1042 506 512 Sep 9 1997 docs 99 lrwxrwxrwx 1 3755 506 16 Oct 28 16:23 ncbi.hqx -> CURRENT/ncbi.hqx 100 lrwxrwxrwx 1 3755 506 18 Oct 28 16:23 ncbi.tar.Z -> CURRENT/ncbi.tar.Z 101 lrwxrwxrwx 1 3755 506 19 Oct 28 16:23 ncbi.tar.gz -> CURRENT/ncbi.tar.gz 102 lrwxrwxrwx 1 3755 506 17 Oct 28 16:23 ncbiz.exe -> CURRENT/ncbiz.exe 103 lrwxrwxrwx 1 3755 506 4 Oct 28 16:23 newdoc -> docs 104 drwxr-sr-x 7 3755 506 512 Jan 24 19:12 old 105 lrwxrwxrwx 1 3755 506 13 Oct 28 16:23 readme.unx -> ../readme.unx 106 drwxr-sr-x 2 3755 506 1024 Jan 24 21:26 sdkdoc 107 226 Transfer complete. 108 ftp> get ncbi.tar.Z 109 200 PORT command successful. 110 150 Opening BINARY mode data connection for ncbi.tar.Z (12504643 bytes). 111 226 Transfer complete. 112 12504643 bytes received in 15 seconds (8.3e+02 Kbytes/s) 113 ftp> bye 114 221-You have transferred 12504643 bytes in 1 files. 115 221-Total traffic for this session was 12506736 bytes in 2 transfers. 116 221-Thank you for using the FTP service on ncbi. 117 221 Goodbye. 118 annie|/work/toolbox|505> ls -l 119 total 12224 120 -rw-r--r-- 1 coremake ncbi 12504643 Jan 31 14:09 ncbi.tar.Z 121 annie|/work/toolbox|506> uncompress < ncbi.tar.Z |tar xf - 122 annie|/work/toolbox|507> ls -l 123 total 12225 124 drwxr-xr-x 32 coremake ncbi 1024 Jan 24 16:18 ncbi 125 -rw-r--r-- 1 coremake ncbi 12504643 Jan 31 14:09 ncbi.tar.Z 126 annie|/work/toolbox|508> ./ncbi/make/makedis.csh 2>&1|tee out.makedis.txt 127 platform is alphaOSF1 128 make CFLAGS1="-fast -c " LDFLAGS1="-fast" SHELL="/usr/bin/sh" LCL="alf" RAN="ls -l" CC="cc" LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a LIB20=libncbidesk.a VIBFLAG="-DWIN_MOTIF" VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub" all 129 chmod -R ug+rw,o+r . 130 ./ln-if-absent ../corelib/tsprintf.h ../include 131 ./ln-if-absent ../corelib/gifgen.h ../include 132 ./ln-if-absent ../corelib/ncbi*.h ../include 133 ./ln-if-absent ../corelib/tree*.h ../include 134 ./ln-if-absent ../corelib/regex.h ../include 135 ./ln-if-absent ../corelib/matrix.h ../include 136 ./ln-if-absent ../corelib/binary.h ../include 137 ./ln-if-absent ../corelib/ncbilcl.alf ../include/ncbilcl.h 138 ./ln-if-absent ../corelib/*.c . 139 ./ln-if-absent ../corelib/core*.h . 140 ./ln-if-absent ../asnlib/*.h . 141 mv asn.h ../include 142 ./ln-if-absent ../asnlib/*.c . 143 ./ln-if-absent ../connect/*.c . 144 ./ln-if-absent ../connect/*.h ../include 145 ./ln-if-absent ../object/*.c . 146 ./ln-if-absent ../object/*.h ../include 147 ./ln-if-absent ../access/*.c . 148 ./ln-if-absent ../access/*.h ../include 149 ./ln-if-absent ../asnstat/*.h ../include 150 ./ln-if-absent ../api/*.h ../include 151 ./ln-if-absent ../api/*.c . 152 ./ln-if-absent ../cdromlib/*.h ../include 153 ./ln-if-absent ../cdromlib/*.c . 154 ./ln-if-absent ../vibrant/*.h ../include 155 ./ln-if-absent ../vibrant/*.c . 156 ./ln-if-absent ../desktop/*.h ../include 157 ./ln-if-absent ../desktop/*.c . 158 ./ln-if-absent ../biostruc/*.h ../include 159 ./ln-if-absent ../biostruc/*.c . 160 ./ln-if-absent ../tools/*.h ../include 161 ./ln-if-absent ../tools/*.c . 162 ./ln-if-absent ../cn3d/*.h ../include 163 ./ln-if-absent ../cn3d/*.c . 164 ./ln-if-absent ../gif/*.c . 165 ./ln-if-absent ../gif/*.h ../include 166 ./ln-if-absent ../ddv/*.h ../include 167 ./ln-if-absent ../ddv/*.c . 168 ./ln-if-absent ../internal/compr/*.c . 169 set: No match. 170 make: [copy] Error 1 (ignored) 171 ./ln-if-absent ../internal/compr/*.h ../include 172 set: No match. 173 make: [copy] Error 1 (ignored) 174 ./ln-if-absent ../internal/libindx/*.c . 175 set: No match. 176 make: [copy] Error 1 (ignored) 177 ./ln-if-absent ../internal/libindx/*.h ../include 178 set: No match. 179 make: [copy] Error 1 (ignored) 180 ./ln-if-absent ../internal/libpars/*.c . 181 set: No match. 182 make: [copy] Error 1 (ignored) 183 ./ln-if-absent ../internal/libpars/*.h ../include 184 set: No match. 185 make: [copy] Error 1 (ignored) 186 ./ln-if-absent ../internal/ccap/*.c . 187 set: No match. 188 make: [copy] Error 1 (ignored) 189 ./ln-if-absent ../internal/ccap/*.dat . 190 set: No match. 191 make: [copy] Error 1 (ignored) 192 ./ln-if-absent ../internal/ccap/*.h ../include 193 set: No match. 194 make: [copy] Error 1 (ignored) 195 ./ln-if-absent ncbidraw.c ncbidrwg.c 196 ./ln-if-absent ncbithr.c ncbithrs.c 197 ./ln-if-absent ../network/id1arch/*.h ../include 198 chmod -R ug+rw,o+r . 199 echo Waiting...go 200 Waiting...go 201 cc -fast -c -I../include -DWIN_MOTIF ncbithr.c 202 cp -p ncbithr.o ../lib 203 cc -fast -c -I../include -DWIN_MOTIF ncbibs.c 204 cc -fast -c -I../include -DWIN_MOTIF wwwutils.c 205 cc -fast -c -I../include -DWIN_MOTIF ncbierr.c 206 cc -fast -c -I../include -DWIN_MOTIF ncbienv.c 207 cc -fast -c -I../include -DWIN_MOTIF ncbifile.c 208 cc -fast -c -I../include -DWIN_MOTIF ncbimain.c 209 cc -fast -c -I../include -DWIN_MOTIF ncbiprop.c 210 cc -fast -c -I../include -DWIN_MOTIF ncbimath.c 211 cc -fast -c -I../include -DWIN_MOTIF ncbimem.c 212 cc -fast -c -I../include -DWIN_MOTIF ncbimisc.c 213 cc -fast -c -I../include -DWIN_MOTIF ncbimsg.c 214 cc -fast -c -I../include -DWIN_MOTIF ncbistr.c 215 cc -fast -c -I../include -DWIN_MOTIF ncbisgml.c 216 cc -fast -c -I../include -DWIN_MOTIF ncbitime.c 217 cc -fast -c -I../include -DWIN_MOTIF ncbilang.c 218 cc -fast -c -I../include -DWIN_MOTIF asnbufo.c 219 cc -fast -c -I../include -DWIN_MOTIF asndebin.c 220 cc -fast -c -I../include -DWIN_MOTIF asnenbin.c 221 cc -fast -c -I../include -DWIN_MOTIF asngen.c 222 cc -fast -c -I../include -DWIN_MOTIF asnio.c 223 cc -fast -c -I../include -DWIN_MOTIF asnlex.c 224 cc -fast -c -I../include -DWIN_MOTIF asnlext.c 225 cc -fast -c -I../include -DWIN_MOTIF asnout.c 226 cc -fast -c -I../include -DWIN_MOTIF asnprint.c 227 cc -fast -c -I../include -DWIN_MOTIF asntypes.c 228 cc -fast -c -I../include -DWIN_MOTIF asngenob.c 229 cc -fast -c -I../include -DWIN_MOTIF gifgen.c 230 cc -fast -c -I../include -DWIN_MOTIF togif.c 231 cc -DNCBI_NOTHREADS_AVAIL -fast -c -I../include -DWIN_MOTIF ncbithrs.c 232 cc -fast -c -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c 233 cc -fast -c -I../include -DWIN_MOTIF tsprintf.c 234 cc -fast -c -I../include -DWIN_MOTIF ncbiargs.c 235 cc -fast -c -I../include -DWIN_MOTIF tree.c 236 cc -fast -c -I../include -DWIN_MOTIF matrix.c 237 cc -fast -c -I../include -DWIN_MOTIF -DNCBI_C ncbi_socket.c 238 cc -fast -c -I../include -DWIN_MOTIF ncbi_buffer.c 239 cc -fast -c -I../include -DWIN_MOTIF urlquery.c 240 cc -fast -c -I../include -DWIN_MOTIF binary.c 241 rm -f libncbi.a 242 ar cru libncbi.a ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbimain.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o urlquery.o binary.o 243 cp -p libncbi.a ../lib 244 ls -l ../lib/libncbi.a 245 -rw-r--r-- 1 coremake ncbi 827962 Jan 31 14:11 ../lib/libncbi.a 246 cc -fast -c -I../include -DWIN_MOTIF objacces.c 247 cc -fast -c -I../include -DWIN_MOTIF objalign.c 248 cc -fast -c -I../include -DWIN_MOTIF objall.c 249 cc -fast -c -I../include -DWIN_MOTIF objbibli.c 250 cc -fast -c -I../include -DWIN_MOTIF objfeat.c 251 cc -fast -c -I../include -DWIN_MOTIF objgen.c 252 cc -fast -c -I../include -DWIN_MOTIF objloc.c 253 cc -fast -c -I../include -DWIN_MOTIF objmedli.c 254 cc -fast -c -I../include -DWIN_MOTIF objpub.c 255 cc -fast -c -I../include -DWIN_MOTIF objres.c 256 cc -fast -c -I../include -DWIN_MOTIF objseq.c 257 cc -fast -c -I../include -DWIN_MOTIF objblock.c 258 cc -fast -c -I../include -DWIN_MOTIF objcode.c 259 cc -fast -c -I../include -DWIN_MOTIF objsset.c 260 cc -fast -c -I../include -DWIN_MOTIF objsub.c 261 cc -fast -c -I../include -DWIN_MOTIF objprt.c 262 cc -fast -c -I../include -DWIN_MOTIF objfdef.c 263 cc -fast -c -I../include -DWIN_MOTIF objalignloc.c 264 cc -fast -c -I../include -DWIN_MOTIF objmime.c 265 cc -fast -c -I../include -DWIN_MOTIF objpubme.c 266 cc -fast -c -I../include -DWIN_MOTIF objmdrs.c 267 cc -fast -c -I../include -DWIN_MOTIF objproj.c 268 cc -fast -c -I../include -DWIN_MOTIF objent2.c 269 cc -fast -c -I../include -DWIN_MOTIF ent2api.c 270 cc -fast -c -I../include -DWIN_MOTIF seqport.c 271 cc -fast -c -I../include -DWIN_MOTIF sequtil.c 272 cc -fast -c -I../include -DWIN_MOTIF prtutil.c 273 cc -fast -c -I../include -DWIN_MOTIF simple.c 274 cc -fast -c -I../include -DWIN_MOTIF tofasta.c 275 cc -fast -c -I../include -DWIN_MOTIF tofile.c 276 cc -fast -c -I../include -DWIN_MOTIF tomedlin.c 277 cc -fast -c -I../include -DWIN_MOTIF valid.c 278 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 279 #define LAST ( (Uint1)1) 280 -------------^ 281 cc -fast -c -I../include -DWIN_MOTIF alignmgr.c 282 cc -fast -c -I../include -DWIN_MOTIF alignval.c 283 cc -fast -c -I../include -DWIN_MOTIF sqnutil1.c 284 cc: Warning: sqnutil1.c, line 3630: In this statement, & before array "(trp->codon)" is ignored. 285 HeapSort ((VoidPtr) &(trp->codon), 6, sizeof (Uint1), SortCodons); 286 ------------------------^ 287 cc -fast -c -I../include -DWIN_MOTIF sqnutil2.c 288 cc -fast -c -I../include -DWIN_MOTIF subutil.c 289 cc -fast -c -I../include -DWIN_MOTIF edutil.c 290 cc -fast -c -I../include -DWIN_MOTIF asn2ff1.c 291 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 292 #define LAST ( (Uint1)1) 293 -------------^ 294 cc -fast -c -I../include -DWIN_MOTIF asn2ff2.c 295 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 296 #define LAST ( (Uint1)1) 297 -------------^ 298 cc -fast -c -I../include -DWIN_MOTIF asn2ff3.c 299 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 300 #define LAST ( (Uint1)1) 301 -------------^ 302 cc -fast -c -I../include -DWIN_MOTIF asn2ff4.c 303 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 304 #define LAST ( (Uint1)1) 305 -------------^ 306 cc -fast -c -I../include -DWIN_MOTIF asn2ff5.c 307 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 308 #define LAST ( (Uint1)1) 309 -------------^ 310 cc -fast -c -I../include -DWIN_MOTIF asn2ff6.c 311 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 312 #define LAST ( (Uint1)1) 313 -------------^ 314 cc -fast -c -I../include -DWIN_MOTIF ftusrstr.c 315 cc -fast -c -I../include -DWIN_MOTIF gbfeat.c 316 cc -fast -c -I../include -DWIN_MOTIF gbftglob.c 317 cc -fast -c -I../include -DWIN_MOTIF gbparint.c 318 cc -fast -c -I../include -DWIN_MOTIF utilpars.c 319 cc -fast -c -I../include -DWIN_MOTIF utilpub.c 320 cc -fast -c -I../include -DWIN_MOTIF ffprint.c 321 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 322 #define LAST ( (Uint1)1) 323 -------------^ 324 cc -fast -c -I../include -DWIN_MOTIF wprint.c 325 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 326 #define LAST ( (Uint1)1) 327 -------------^ 328 cc -fast -c -I../include -DWIN_MOTIF satutil.c 329 cc -fast -c -I../include -DWIN_MOTIF seqmgr.c 330 cc -fast -c -I../include -DWIN_MOTIF objmgr.c 331 cc -fast -c -I../include -DWIN_MOTIF gather.c 332 cc -fast -c -I../include -DWIN_MOTIF accmmdbs.c 333 cc -fast -c -I../include -DWIN_MOTIF acccn3ds.c 334 cc -fast -c -I../include -DWIN_MOTIF lsqfetch.c 335 cc -fast -c -I../include -DWIN_MOTIF findrepl.c 336 cc -fast -c -I../include -DWIN_MOTIF apparam.c 337 cc -fast -c -I../include -DWIN_MOTIF codon.c 338 cc -fast -c -I../include -DWIN_MOTIF jzcoll.c 339 cc: Warning: jzcoll.c, line 615: In this statement, & before array "(cs_option.flabel_format)" is ignored. 340 MemCopy(&(cs_option.flabel_format), &flabel_format, (size_t)FEATDEF_ANY*sizeof(Uint1)); 341 --------------------------------^ 342 cc -fast -c -I../include -DWIN_MOTIF jzmisc.c 343 cc -fast -c -I../include -DWIN_MOTIF maputil.c 344 cc: Warning: maputil.c, line 314: Type long double has the same representation as type double on this platform and is treated as a synonym for type double in this compilation mode. 345 sprintf(label, "%2.2Lf", (long double) m_val); 346 ---------------------------------------------^ 347 cc -fast -c -I../include -DWIN_MOTIF mconsist.c 348 cc -fast -c -I../include -DWIN_MOTIF txalign.c 349 cc -fast -c -I../include -DWIN_MOTIF salpedit.c 350 cc -fast -c -I../include -DWIN_MOTIF salpstat.c 351 cc -fast -c -I../include -DWIN_MOTIF salpacc.c 352 cc -fast -c -I../include -DWIN_MOTIF salsap.c 353 cc -fast -c -I../include -DWIN_MOTIF salstruc.c 354 cc -fast -c -I../include -DWIN_MOTIF salutil.c 355 cc -fast -c -I../include -DWIN_MOTIF salprop.c 356 cc -fast -c -I../include -DWIN_MOTIF udvseq.c 357 cc -fast -c -I../include -DWIN_MOTIF blocks.c 358 cc -fast -c -I../include -DWIN_MOTIF pgppop.c 359 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 360 #define LAST ( (Uint1)1) 361 -------------^ 362 cc -fast -c -I../include -DWIN_MOTIF samutil.c 363 cc -fast -c -I../include -DWIN_MOTIF ddvcolor.c 364 rm -f libncbiobj.a 365 ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objmime.o objpubme.o objmdrs.o objproj.o objent2.o ent2api.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o alignmgr.o alignval.o sqnutil1.o sqnutil2.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o apparam.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o txalign.o salpedit.o salpstat.o salpacc.o salsap.o salstruc.o salutil.o salprop.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o 366 cp -p libncbiobj.a ../lib 367 ls -l ../lib/libncbiobj.a 368 -rw-r--r-- 1 coremake ncbi 4873308 Jan 31 14:13 ../lib/libncbiobj.a 369 cc -fast -c -I../include -DWIN_MOTIF cdentrez.c 370 cc -fast -c -I../include -DWIN_MOTIF cdromlib.c 371 cc -fast -c -I../include -DWIN_MOTIF cdnewlib.c 372 cc -fast -c -I../include -DWIN_MOTIF casn.c 373 cc -fast -c -I../include -DWIN_MOTIF cdconfig.c 374 cc -fast -c -I../include -DWIN_MOTIF objentr.c 375 rm -f libncbicdr.a 376 ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o 377 cp -p libncbicdr.a ../lib 378 ls -l ../lib/libncbicdr.a 379 -rw-r--r-- 1 coremake ncbi 268044 Jan 31 14:13 ../lib/libncbicdr.a 380 cc -fast -c -I../include -DWIN_MOTIF vibbutns.c 381 cc -fast -c -I../include -DWIN_MOTIF vibextra.c 382 cc -fast -c -I../include -DWIN_MOTIF vibfiles.c 383 cc -fast -c -I../include -DWIN_MOTIF vibforms.c 384 cc -fast -c -I../include -DWIN_MOTIF vibgroup.c 385 cc -fast -c -I../include -DWIN_MOTIF viblists.c 386 cc -fast -c -I../include -DWIN_MOTIF vibmenus.c 387 cc -fast -c -I../include -DWIN_MOTIF vibprmpt.c 388 cc -fast -c -I../include -DWIN_MOTIF vibsbars.c 389 cc -fast -c -I../include -DWIN_MOTIF vibslate.c 390 cc -fast -c -I../include -DWIN_MOTIF vibtexts.c 391 cc -fast -c -I../include -DWIN_MOTIF vibutils.c 392 cc -fast -c -I../include -DWIN_MOTIF vibwndws.c 393 cc -fast -c -I../include -DWIN_MOTIF ncbidraw.c 394 cc -fast -c -I../include -DWIN_MOTIF drawing.c 395 cc -fast -c -I../include -DWIN_MOTIF mapping.c 396 cc -fast -c -I../include -DWIN_MOTIF picture.c 397 cc -fast -c -I../include -DWIN_MOTIF viewer.c 398 cc -fast -c -I../include -DWIN_MOTIF document.c 399 cc -fast -c -I../include -DWIN_MOTIF table.c 400 cc -fast -c -I../include -DWIN_MOTIF palette.c 401 cc -fast -c -I../include -DWIN_MOTIF diagnost.c 402 cc -fast -c -I../include -DWIN_MOTIF image.c 403 cc -fast -c -I../include -DWIN_MOTIF pictur3d.c 404 cc -fast -c -I../include -DWIN_MOTIF prim3d1.c 405 cc -fast -c -I../include -DWIN_MOTIF prim3d2.c 406 cc -fast -c -I../include -DWIN_MOTIF prim3d3.c 407 cc -fast -c -I../include -DWIN_MOTIF prim3d4.c 408 cc -fast -c -I../include -DWIN_MOTIF prim3d5.c 409 cc -fast -c -I../include -DWIN_MOTIF viewer3d.c 410 cc -fast -c -I../include -DWIN_MOTIF vibmouse.c 411 cc -fast -c -I../include -DWIN_MOTIF netscape.c 412 cc -fast -c -I../include -DWIN_MOTIF imagelst.c 413 cc -fast -c -I../include -DWIN_MOTIF treeview.c 414 cc -fast -c -I../include -DWIN_MOTIF shim3d.c 415 cc -fast -c -I../include -DWIN_MOTIF odlbox.c 416 rm -f libvibrant.a 417 ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o 418 cp -p libvibrant.a ../lib 419 ls -l ../lib/libvibrant.a 420 -rw-r--r-- 1 coremake ncbi 1624658 Jan 31 14:14 ../lib/libvibrant.a 421 cc -fast -c -I../include -DWIN_MOTIF accentr.c 422 cc -fast -c -I../include -DWIN_MOTIF accutils.c 423 rm -f libncbiacc.a 424 ar cru libncbiacc.a accentr.o accutils.o 425 cp -p libncbiacc.a ../lib 426 ls -l ../lib/libncbiacc.a 427 -rw-r--r-- 1 coremake ncbi 83678 Jan 31 14:14 ../lib/libncbiacc.a 428 cc -fast -c -I../include -DWIN_MOTIF drawseq.c 429 cc -fast -c -I../include -DWIN_MOTIF dotmatrx.c 430 cc -fast -c -I../include -DWIN_MOTIF fea2seg.c 431 cc -fast -c -I../include -DWIN_MOTIF fstyle.c 432 cc -fast -c -I../include -DWIN_MOTIF smdlg1.c 433 cc -fast -c -I../include -DWIN_MOTIF smdlg2.c 434 cc -fast -c -I../include -DWIN_MOTIF smdlg3.c 435 cc -fast -c -I../include -DWIN_MOTIF smtools.c 436 cc -fast -c -I../include -DWIN_MOTIF styleman.c 437 cc -fast -c -I../include -DWIN_MOTIF stylemui.c 438 cc -fast -c -I../include -DWIN_MOTIF glbpic.c 439 cc -fast -c -I../include -DWIN_MOTIF layout.c 440 cc -fast -c -I../include -DWIN_MOTIF saldist.c 441 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 442 #define DEL ((Uint1)2) 443 ------------^ 444 cc -fast -c -I../include -DWIN_MOTIF saled.c 445 cc -fast -c -I../include -DWIN_MOTIF salfiles.c 446 cc -fast -c -I../include -DWIN_MOTIF salpanel.c 447 cc -fast -c -I../include -DWIN_MOTIF salparam.c 448 cc -fast -c -I../include -DWIN_MOTIF salsa.c 449 cc -fast -c -I../include -DWIN_MOTIF seqfltr.c 450 cc -fast -c -I../include -DWIN_MOTIF seqgraph.c 451 cc -fast -c -I../include -DWIN_MOTIF seqgrphx.c 452 cc -fast -c -I../include -DWIN_MOTIF seqmtrx.c 453 cc -fast -c -I../include -DWIN_MOTIF seqpcc.c 454 cc -fast -c -I../include -DWIN_MOTIF seqanal.c 455 cc -fast -c -I../include -DWIN_MOTIF aacomp.c 456 cc -fast -c -I../include -DWIN_MOTIF seqscrl.c 457 cc -fast -c -I../include -DWIN_MOTIF vsm.c 458 cc -fast -c -I../include -DWIN_MOTIF vsmfile.c 459 cc -fast -c -I../include -DWIN_MOTIF vsmutil.c 460 cc -fast -c -I../include -DWIN_MOTIF udvgraph.c 461 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 462 #define LAST ( (Uint1)1) 463 -------------^ 464 cc -fast -c -I../include -DWIN_MOTIF udvopen.c 465 cc -fast -c -I../include -DWIN_MOTIF udvpanel.c 466 cc -fast -c -I../include -DWIN_MOTIF dlgutil1.c 467 cc -fast -c -I../include -DWIN_MOTIF dlgutil2.c 468 cc -fast -c -I../include -DWIN_MOTIF medview.c 469 cc -fast -c -I../include -DWIN_MOTIF bspview.c 470 cc -fast -c -I../include -DWIN_MOTIF gbfview.c 471 cc -fast -c -I../include -DWIN_MOTIF gphview.c 472 cc -fast -c -I../include -DWIN_MOTIF gphdraw.c 473 cc -fast -c -I../include -DWIN_MOTIF gxydraw.c 474 cc -fast -c -I../include -DWIN_MOTIF gtrdraw.c 475 cc -fast -c -I../include -DWIN_MOTIF biosrc.c 476 cc -fast -c -I../include -DWIN_MOTIF cdrgn.c 477 cc -fast -c -I../include -DWIN_MOTIF import.c 478 cc -fast -c -I../include -DWIN_MOTIF pubdesc.c 479 cc -fast -c -I../include -DWIN_MOTIF seqsub.c 480 cc -fast -c -I../include -DWIN_MOTIF mapgene.c 481 cc -fast -c -I../include -DWIN_MOTIF prtgene.c 482 cc -fast -c -I../include -DWIN_MOTIF ddvclick.c 483 cc -fast -c -I../include -DWIN_MOTIF ddvcreate.c 484 cc -fast -c -I../include -DWIN_MOTIF ddvgraph.c 485 cc -fast -c -I../include -DWIN_MOTIF ddvopen.c 486 cc -fast -c -I../include -DWIN_MOTIF ddvpanel.c 487 rm -f libncbidesk.a 488 ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dlgutil1.o dlgutil2.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o ddvclick.o ddvcreate.o ddvgraph.o ddvopen.o ddvpanel.o 489 cp -p libncbidesk.a ../lib 490 ls -l ../lib/libncbidesk.a 491 -rw-r--r-- 1 coremake ncbi 3168050 Jan 31 14:16 ../lib/libncbidesk.a 492 cc -fast -c -I../include -DWIN_MOTIF corematx.c 493 cc -fast -c -I../include -DWIN_MOTIF dvncode.c 494 cc -fast -c -I../include -DWIN_MOTIF objmmdb1.c 495 cc -fast -c -I../include -DWIN_MOTIF objmmdb2.c 496 cc -fast -c -I../include -DWIN_MOTIF objmmdb3.c 497 cc -fast -c -I../include -DWIN_MOTIF mmdbapi.c 498 cc -fast -c -I../include -DWIN_MOTIF mmdbapi1.c 499 cc -fast -c -I../include -DWIN_MOTIF mmdbapi2.c 500 cc -fast -c -I../include -DWIN_MOTIF mmdbapi3.c 501 cc -fast -c -I../include -DWIN_MOTIF mmdbapi4.c 502 cc -fast -c -I../include -DWIN_MOTIF mmdbentr.c 503 cc -fast -c -I../include -DWIN_MOTIF vastsubs.c 504 cc -fast -c -I../include -DWIN_MOTIF prunebsc.c 505 rm -f libncbimmdb.a 506 ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o 507 cp -p libncbimmdb.a ../lib 508 ls -l ../lib/libncbimmdb.a 509 -rw-r--r-- 1 coremake ncbi 778712 Jan 31 14:16 ../lib/libncbimmdb.a 510 cc -fast -c -I../include -DWIN_MOTIF csim.c 511 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 512 #define DEL ((Uint1)2) 513 ------------^ 514 cc -fast -c -I../include -DWIN_MOTIF db_slist.c 515 cc -fast -c -I../include -DWIN_MOTIF dust.c 516 cc -fast -c -I../include -DWIN_MOTIF falign.c 517 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 518 #define DEL ((Uint1)2) 519 ------------^ 520 cc -fast -c -I../include -DWIN_MOTIF g_any.c 521 cc: Warning: g_any.c, line 92: The redefinition of the macro "DEL" conflicts with a current definition because the number of parameters is different. The redefinition is now in effect. 522 #define DEL(k) \ 523 ------------^ 524 cc -fast -c -I../include -DWIN_MOTIF sim2.c 525 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 526 #define DEL ((Uint1)2) 527 ------------^ 528 cc -fast -c -I../include -DWIN_MOTIF sim3.c 529 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 530 #define DEL ((Uint1)2) 531 ------------^ 532 cc -fast -c -I../include -DWIN_MOTIF sim4.c 533 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 534 #define DEL ((Uint1)2) 535 ------------^ 536 cc -fast -c -I../include -DWIN_MOTIF simutil.c 537 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 538 #define DEL ((Uint1)2) 539 ------------^ 540 cc -fast -c -I../include -DWIN_MOTIF slist.c 541 cc -fast -c -I../include -DWIN_MOTIF sec.c 542 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 543 #define DEL ((Uint1)2) 544 ------------^ 545 cc -fast -c -I../include -DWIN_MOTIF tfuns.c 546 cc -fast -c -I../include -DWIN_MOTIF toasn3.c 547 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 548 #define LAST ( (Uint1)1) 549 -------------^ 550 cc -fast -c -I../include -DWIN_MOTIF toporg.c 551 cc -fast -c -I../include -DWIN_MOTIF pobutil.c 552 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 553 #define DEL ((Uint1)2) 554 ------------^ 555 cc -fast -c -I../include -DWIN_MOTIF stsutil.c 556 cc -fast -c -I../include -DWIN_MOTIF suggadj.c 557 cc -fast -c -I../include -DWIN_MOTIF suggest.c 558 cc -fast -c -I../include -DWIN_MOTIF suggslp.c 559 cc -fast -c -I../include -DWIN_MOTIF blast.c 560 cc -fast -c -I../include -DWIN_MOTIF blastutl.c 561 cc -fast -c -I../include -DWIN_MOTIF blastool.c 562 cc -fast -c -I../include -DWIN_MOTIF splutil.c 563 cc -fast -c -I../include -DWIN_MOTIF gapxdrop.c 564 cc -fast -c -I../include -DWIN_MOTIF bandalg0.c 565 cc -fast -c -I../include -DWIN_MOTIF bandalg1.c 566 cc -fast -c -I../include -DWIN_MOTIF bandalg2.c 567 cc -fast -c -I../include -DWIN_MOTIF bandalg3.c 568 cc -fast -c -I../include -DWIN_MOTIF bandalg4.c 569 cc -fast -c -I../include -DWIN_MOTIF bandalg5.c 570 cc -fast -c -I../include -DWIN_MOTIF bandalgn.c 571 cc -fast -c -I../include -DWIN_MOTIF blastkar.c 572 cc -fast -c -I../include -DWIN_MOTIF posit.c 573 cc -fast -c -I../include -DWIN_MOTIF lookup.c 574 cc -fast -c -I../include -DWIN_MOTIF readdb.c 575 cc -fast -c -I../include -DWIN_MOTIF ncbisam.c 576 cc -fast -c -I../include -DWIN_MOTIF ncbisort.c 577 cc -fast -c -I../include -DWIN_MOTIF salign.c 578 cc -fast -c -I../include -DWIN_MOTIF salptool.c 579 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 580 #define DEL ((Uint1)2) 581 ------------^ 582 cc -fast -c -I../include -DWIN_MOTIF urkutil.c 583 cc -fast -c -I../include -DWIN_MOTIF urkpcc.c 584 cc -fast -c -I../include -DWIN_MOTIF urkptpf.c 585 cc -fast -c -I../include -DWIN_MOTIF urkepi.c 586 cc -fast -c -I../include -DWIN_MOTIF urkfltr.c 587 cc -fast -c -I../include -DWIN_MOTIF urkdust.c 588 cc -fast -c -I../include -DWIN_MOTIF urksigu.c 589 cc -fast -c -I../include -DWIN_MOTIF seg.c 590 cc -fast -c -I../include -DWIN_MOTIF urkbias.c 591 cc -fast -c -I../include -DWIN_MOTIF urkcnsrt.c 592 cc -fast -c -I../include -DWIN_MOTIF urktree.c 593 cc -fast -c -I../include -DWIN_MOTIF pseed3.c 594 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 595 #define DEL ((Uint1)2) 596 ------------^ 597 cc -fast -c -I../include -DWIN_MOTIF pattern1.c 598 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 599 #define DEL ((Uint1)2) 600 ------------^ 601 cc -fast -c -I../include -DWIN_MOTIF impatool.c 602 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 603 #define DEL ((Uint1)2) 604 ------------^ 605 cc -fast -c -I../include -DWIN_MOTIF posit2.c 606 cc -fast -c -I../include -DWIN_MOTIF newkar.c 607 cc -fast -c -I../include -DWIN_MOTIF mbalign.c 608 cc -fast -c -I../include -DWIN_MOTIF mbutils.c 609 cc -fast -c -I../include -DWIN_MOTIF vecscrn.c 610 rm -f libncbitool.a 611 ar cru libncbitool.a csim.o db_slist.o dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o newkar.o mbalign.o mbutils.o vecscrn.o 612 cp -p libncbitool.a ../lib 613 ls -l ../lib/libncbitool.a 614 -rw-r--r-- 1 coremake ncbi 2217638 Jan 31 14:17 ../lib/libncbitool.a 615 cc -fast -c -I../include -DWIN_MOTIF gdfontg.c 616 cc -fast -c -I../include -DWIN_MOTIF gdfontmb.c 617 cc -fast -c -I../include -DWIN_MOTIF gdfontt.c 618 cc -fast -c -I../include -DWIN_MOTIF pictogif.c 619 cc -fast -c -I../include -DWIN_MOTIF gdfontl.c 620 cc -fast -c -I../include -DWIN_MOTIF gdfonts.c 621 cc -DWIN_GIF -fast -c -I../include -DWIN_MOTIF ncbidrwg.c 622 rm -f libvibgif.a 623 ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o 624 cp -p libvibgif.a ../lib 625 ls -l ../lib/libvibgif.a 626 -rw-r--r-- 1 coremake ncbi 250960 Jan 31 14:17 ../lib/libvibgif.a 627 cc -fast -c -I../include -DWIN_MOTIF algorend.c 628 cc -fast -c -I../include -DWIN_MOTIF cn3dmsel.c 629 cc -fast -c -I../include -DWIN_MOTIF cn3dopen.c 630 cc -fast -c -I../include -DWIN_MOTIF cn3dsave.c 631 cc -fast -c -I../include -DWIN_MOTIF cn3dxprt.c 632 cc -fast -c -I../include -DWIN_MOTIF cn3dwin.c 633 cc -fast -c -I../include -DWIN_MOTIF cn3dentr.c 634 cc -fast -c -I../include -DWIN_MOTIF cn3dmsg.c 635 cc -fast -c -I../include -DWIN_MOTIF cn3dmatn.c 636 cc -fast -c -I../include -DWIN_MOTIF cn3dmodl.c 637 cc -fast -c -I../include -DWIN_MOTIF cn3dshim.c 638 cc -fast -c -I../include -DWIN_MOTIF cn3dmesh.c 639 rm -f libncbicn3d.a 640 ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o 641 cp -p libncbicn3d.a ../lib 642 ls -l ../lib/libncbicn3d.a 643 -rw-r--r-- 1 coremake ncbi 448322 Jan 31 14:18 ../lib/libncbicn3d.a 644 cc -o asntool -fast -I../include -DWIN_MOTIF -L../lib asntool.c asncode.c ../lib/libncbi.a -lm 645 cp -p asntool ../bin 646 make -f makedemo.unx CFLAGS1="-fast -c" LDFLAGS1="-fast" SHELL="/usr/bin/sh" LCL="alf" RAN="ls -l" CC="cc" LIB4=-lvibrant VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub" VIBFLAG="-DWIN_MOTIF" 647 ./ln-if-absent ../demo/*.* . 648 ./ln-if-absent ../internal/*.* . 649 set: No match. 650 make: [copy] Error 1 (ignored) 651 chmod -R ug+rw,o+r . 652 echo Waiting...go 653 Waiting...go 654 cc -o testcore -fast -I../include -L../lib -DWIN_MOTIF testcore.c -lvibrant -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 655 cc -o makeset -fast -I../include -L../lib -DWIN_MOTIF makeset.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 656 cc -o getmesh -fast -I../include -L../lib -DWIN_MOTIF getmesh.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 657 cc -o indexpub -fast -I../include -L../lib -DWIN_MOTIF indexpub.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 658 cc -o getpub -fast -I../include -L../lib -DWIN_MOTIF getpub.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 659 cc -o testobj -fast -I../include -L../lib -DWIN_MOTIF testobj.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 660 cc -o seqtest -fast -I../include -L../lib -DWIN_MOTIF seqtest.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 661 cc -o dosimple -fast -I../include -L../lib -DWIN_MOTIF dosimple.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 662 cc -o asn2ff -fast -I../include -L../lib -DWIN_MOTIF asn2ff.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 663 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 664 #define LAST ( (Uint1)1) 665 -------------^ 666 cc: Warning: asn2ff.c, line 63: In this statement, the referenced type of the pointer value "message" is const, but the referenced type of the target of this assignment is not. 667 fprintf(fpl, "%s\n", message); 668 --------^ 669 cc -o getseq -fast -I../include -L../lib -DWIN_MOTIF getseq.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 670 cc -o getfeat -fast -I../include -L../lib -DWIN_MOTIF getfeat.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 671 cc -o checksub -fast -I../include -L../lib -DWIN_MOTIF checksub.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 672 cc -o asndhuff -fast -I../include -L../lib -DWIN_MOTIF asndhuff.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 673 cc -o entrcmd -fast -I../include -L../lib -DWIN_MOTIF entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm 674 cc -o asn2fast -fast -I../include -L../lib -DWIN_MOTIF asn2fast.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 675 cc -o errhdr -fast -I../include -L../lib -DWIN_MOTIF errhdr.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 676 cc -o cdscan -fast -I../include -L../lib -DWIN_MOTIF cdscan.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 677 cc -o findspl -fast -I../include -L../lib -DWIN_MOTIF findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm 678 cc -o ncbisort -fast -I../include -L../lib -DWIN_MOTIF sortcmd.c -lncbitool -lncbi -lm 679 cc -o fa2htgs -fast -I../include -L../lib -DWIN_MOTIF fa2htgs.c -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 680 cc -o fastacmd -fast -I../include -L../lib -DWIN_MOTIF fastacmd.c -lncbitool -lncbiobj -lncbi -lm 681 cc -o formatdb -fast -I../include -L../lib -DWIN_MOTIF formatdb.c -lncbitool -lncbiobj -lncbi -lm 682 cc -o blastall -fast -I../include -L../lib -DWIN_MOTIF blastall.c -lncbitool -lncbiobj -lncbi -lm 683 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 684 #define DEL ((Uint1)2) 685 ------------^ 686 cc -o blastpgp -fast -I../include -L../lib -DWIN_MOTIF blastpgp.c -lncbitool -lncbiobj -lncbi -lm 687 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 688 #define DEL ((Uint1)2) 689 ------------^ 690 cc -o testval -fast -I../include -L../lib -DWIN_MOTIF testval.c -lncbiobj -lncbi -lm 691 cc -o seedtop -fast -I../include -L../lib -DWIN_MOTIF seedtop.c -lncbitool -lncbiobj -lncbi -lm 692 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 693 #define DEL ((Uint1)2) 694 ------------^ 695 cc -o fmerge -fast -I../include -L../lib -DWIN_MOTIF fmerge.c -lncbitool -lncbiobj -lncbi -lm 696 cc -o makemat -fast -I../include -L../lib -DWIN_MOTIF makemat.c -lncbitool -lncbiobj -lncbi -lm 697 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 698 #define DEL ((Uint1)2) 699 ------------^ 700 cc -o copymat -fast -I../include -L../lib -DWIN_MOTIF copymat.c -lncbitool -lncbiobj -lncbi -lm 701 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 702 #define DEL ((Uint1)2) 703 ------------^ 704 cc: Warning: copymat.c, line 592: In this statement, & before array "(combinedMatrix[0])" is ignored. 705 FileWrite((void *) &(combinedMatrix[0]), sizeof(ScoreRow), 706 -----------------------^ 707 cc -o impala -fast -I../include -L../lib -DWIN_MOTIF profiles.c -lncbitool -lncbiobj -lncbi -lm 708 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 709 #define DEL ((Uint1)2) 710 ------------^ 711 cc -o bl2seq -fast -I../include -L../lib -DWIN_MOTIF bl2seq.c -lncbitool -lncbiobj -lncbi -lm 712 cc -o megablst -fast -I../include -L../lib -DWIN_MOTIF megablst.c -lncbitool -lncbiobj -lncbi -lm 713 cc -o vecscreen -fast -I../include -L../lib -DWIN_MOTIF vecscreen.c -lncbitool -lncbiobj -lncbi -lm 714 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 715 #define DEL ((Uint1)2) 716 ------------^ 717 make -f makedemo.unx CFLAGS1="-fast -c" LDFLAGS1="-fast" SHELL="/usr/bin/sh" LCL="alf" RAN="ls -l" CC="cc" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS=-lpthread LIB4=-lvibrant VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub" VIBFLAG="-DWIN_MOTIF" blastall blastpgp seedtop 718 cc -o blastall -fast -I../include -L../lib -DWIN_MOTIF blastall.c ncbithr.o -lncbitool -lncbiobj -lncbi -lm -lpthread 719 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 720 #define DEL ((Uint1)2) 721 ------------^ 722 cc -o blastpgp -fast -I../include -L../lib -DWIN_MOTIF blastpgp.c ncbithr.o -lncbitool -lncbiobj -lncbi -lm -lpthread 723 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 724 #define DEL ((Uint1)2) 725 ------------^ 726 cc -o seedtop -fast -I../include -L../lib -DWIN_MOTIF seedtop.c ncbithr.o -lncbitool -lncbiobj -lncbi -lm -lpthread 727 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 728 #define DEL ((Uint1)2) 729 ------------^ 730 make -f makenet.unx CFLAGS1="-fast -c " LDFLAGS1="-fast" SHELL="/usr/bin/sh" CC="cc" RAN="ls -l" OTHERLIBS="-lm" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub " VIBFLAG="-DWIN_MOTIF" VIB="Psequin Nentrez Cn3D udv ddv blastcl3 " 731 ./ln-if-absent ../connect/test/*.c . 732 ./ln-if-absent ../network/entrez/client/*.h ../include 733 ./ln-if-absent ../network/entrez/client/*.c . 734 ./ln-if-absent ../network/medarch/client/*.h ../include 735 ./ln-if-absent ../network/medarch/client/*.c . 736 ./ln-if-absent ../network/taxonomy/client/*.h ../include 737 set: No match. 738 make: [copy] Error 1 (ignored) 739 ./ln-if-absent ../network/taxonomy/client/*.c . 740 set: No match. 741 make: [copy] Error 1 (ignored) 742 ./ln-if-absent ../network/taxon1/stdalone/*.h ../include 743 set: No match. 744 make: [copy] Error 1 (ignored) 745 ./ln-if-absent ../network/taxon1/stdalone/*.c . 746 set: No match. 747 make: [copy] Error 1 (ignored) 748 ./ln-if-absent ../network/taxon1/client/*.h ../include 749 ./ln-if-absent ../network/taxon1/client/*.c . 750 ./ln-if-absent ../network/taxon1/common/*.h ../include 751 ./ln-if-absent ../network/taxon1/common/*.c . 752 ./ln-if-absent ../network/taxon1/taxon2/*.h ../include 753 ./ln-if-absent ../network/taxon1/taxon2/*.c . 754 ./ln-if-absent ../network/id0arch/client/*.h ../include 755 set: No match. 756 make: [copy] Error 1 (ignored) 757 ./ln-if-absent ../network/id0arch/client/*.c . 758 set: No match. 759 make: [copy] Error 1 (ignored) 760 ./ln-if-absent ../network/id1arch/*.h ../include 761 ./ln-if-absent ../network/id1arch/*.c . 762 ./ln-if-absent ../network/spell/client/*.h ../include 763 set: No match. 764 make: [copy] Error 1 (ignored) 765 ./ln-if-absent ../network/spell/client/*.c . 766 set: No match. 767 make: [copy] Error 1 (ignored) 768 ./ln-if-absent ../network/suggest/client/*.h ../include 769 ./ln-if-absent ../network/suggest/client/*.c . 770 ./ln-if-absent ../network/blast3/client/*.h ../include 771 ./ln-if-absent ../network/blast3/client/*.c . 772 ./ln-if-absent ../network/encrypt/ripem/rsaref/source/*.c . 773 set: No match. 774 make: [copy] Error 1 (ignored) 775 ./ln-if-absent ../network/socks/socks.cstc.4.2/lib/*.c . 776 ./ln-if-absent ../internal/misc/*.c . 777 set: No match. 778 make: [copy] Error 1 (ignored) 779 ./ln-if-absent ../internal/misc/*.h ../include 780 set: No match. 781 make: [copy] Error 1 (ignored) 782 ./ln-if-absent ../internal/ssparse/*.c . 783 set: No match. 784 make: [copy] Error 1 (ignored) 785 ./ln-if-absent ../internal/ssparse/*.h ../include 786 set: No match. 787 make: [copy] Error 1 (ignored) 788 ./ln-if-absent ../internal/libparsn/*.c . 789 set: No match. 790 make: [copy] Error 1 (ignored) 791 ./ln-if-absent ../internal/libparsn/*.h ../include 792 set: No match. 793 make: [copy] Error 1 (ignored) 794 ./ln-if-absent ../internal/smart/smartnet/*.c . 795 set: No match. 796 make: [copy] Error 1 (ignored) 797 ./ln-if-absent ../internal/smart/smartnet/*.h ../include 798 set: No match. 799 make: [copy] Error 1 (ignored) 800 ./ln-if-absent ../internal/www/*.c . 801 set: No match. 802 make: [copy] Error 1 (ignored) 803 ./ln-if-absent ../internal/www/*.h ../include 804 set: No match. 805 make: [copy] Error 1 (ignored) 806 ./ln-if-absent ../internal/query/*.c . 807 set: No match. 808 make: [copy] Error 1 (ignored) 809 ./ln-if-absent ../internal/query/*.h ../include 810 set: No match. 811 make: [copy] Error 1 (ignored) 812 ./ln-if-absent ../network/sybutils/ctlib/*.c . 813 set: No match. 814 make: [copy] Error 1 (ignored) 815 ./ln-if-absent ../network/sybutils/ctlib/*.h ../include 816 set: No match. 817 make: [copy] Error 1 (ignored) 818 ./ln-if-absent ../network/sybutils/oslib/*.c . 819 set: No match. 820 make: [copy] Error 1 (ignored) 821 ./ln-if-absent ../network/sybutils/oslib/*.h ../include 822 set: No match. 823 make: [copy] Error 1 (ignored) 824 ./ln-if-absent ../network/sybutils/idloadlib/*.c . 825 set: No match. 826 make: [copy] Error 1 (ignored) 827 ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include 828 set: No match. 829 make: [copy] Error 1 (ignored) 830 ./ln-if-absent ../network/nsclilib/*.h ../include 831 ./ln-if-absent ../network/nsclilib/*.c . 832 ./ln-if-absent ../network/vibnet/*.c . 833 ./ln-if-absent ../network/vibnet/*.h ../include 834 ./ln-if-absent ../cdromlib/*.h ../include 835 ./ln-if-absent ../cdromlib/accentr.c . 836 ./ln-if-absent ../cdromlib/accutils.c . 837 ./ln-if-absent ../sequin/*.* . 838 ./ln-if-absent ../demo/entrez.c . 839 ./ln-if-absent ../demo/netentcf.c . 840 ./ln-if-absent ../demo/seqget.c . 841 ./ln-if-absent ../demo/entrcmd.c . 842 ./ln-if-absent ../demo/batch.c . 843 ./ln-if-absent ../demo/nbatch.c . 844 ./ln-if-absent ../demo/elecpcr.c . 845 ./ln-if-absent ../demo/fetchent.c . 846 ./ln-if-absent ../demo/udvmain.c . 847 ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . 848 ./ln-if-absent ../network/entrez/server/*.* . 849 set: No match. 850 make: [copy] Error 1 (ignored) 851 ./ln-if-absent ../network/suggest/server/*.* . 852 chmod -R ug+rw,o+r . 853 echo Waiting...go 854 Waiting...go 855 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c 856 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c 857 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c 858 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c 859 rm -f libnetcli.a 860 ar cru libnetcli.a ni_lib_.o ni_service.o ni_debug.o ni_error.o 861 cp -p libnetcli.a ../lib 862 ls -l ../lib/libnetcli.a 863 -rw-r--r-- 1 coremake ncbi 297544 Jan 31 14:19 ../lib/libnetcli.a 864 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c 865 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c 866 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c 867 rm -f libnetentr.a 868 ar cru libnetentr.a netentr.o netlib.o objneten.o 869 cp -p libnetentr.a ../lib 870 ls -l ../lib/libnetentr.a 871 -rw-r--r-- 1 coremake ncbi 300656 Jan 31 14:20 ../lib/libnetentr.a 872 ./ln-if-absent accentr.c Naccentr.c 873 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c 874 rm -f libncbiNacc.a 875 ar cru libncbiNacc.a Naccentr.o accutils.o 876 cp -p libncbiNacc.a ../lib 877 ls -l ../lib/libncbiNacc.a 878 -rw-r--r-- 1 coremake ncbi 86642 Jan 31 14:20 ../lib/libncbiNacc.a 879 ./ln-if-absent accentr.c Caccentr.c 880 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c 881 rm -f libncbiCacc.a 882 ar cru libncbiCacc.a Caccentr.o accutils.o 883 cp -p libncbiCacc.a ../lib 884 ls -l ../lib/libncbiCacc.a 885 -rw-r--r-- 1 coremake ncbi 92234 Jan 31 14:20 ../lib/libncbiCacc.a 886 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c 887 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c 888 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c 889 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 890 #define DEL ((Uint1)2) 891 ------------^ 892 rm -f libvibnet.a 893 ar cru libvibnet.a netcnfg.o trmlst.o docsum.o 894 cp -p libvibnet.a ../lib 895 ls -l ../lib/libvibnet.a 896 -rw-r--r-- 1 coremake ncbi 305710 Jan 31 14:20 ../lib/libvibnet.a 897 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c 898 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c 899 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c 900 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c 901 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c 902 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c 903 rm -f libncbitxc2.a 904 ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o 905 cp -p libncbitxc2.a ../lib 906 ls -l ../lib/libncbitxc2.a 907 -rw-r--r-- 1 coremake ncbi 190068 Jan 31 14:20 ../lib/libncbitxc2.a 908 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c 909 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c 910 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c 911 rm -f libncbiid1.a 912 ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 913 cp -p libncbiid1.a ../lib 914 ls -l ../lib/libncbiid1.a 915 -rw-r--r-- 1 coremake ncbi 64478 Jan 31 14:20 ../lib/libncbiid1.a 916 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c 917 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c 918 rm -f libnetblast.a 919 ar cru libnetblast.a objblst3.o netblap3.o 920 cp -p libnetblast.a ../lib 921 ls -l ../lib/libnetblast.a 922 -rw-r--r-- 1 coremake ncbi 194888 Jan 31 14:20 ../lib/libnetblast.a 923 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c 924 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c 925 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c 926 rm -f libncbimla.a 927 ar cru libncbimla.a objmla.o medarch.o medutil.o 928 cp -p libncbimla.a ../lib 929 ls -l ../lib/libncbimla.a 930 -rw-r--r-- 1 coremake ncbi 110092 Jan 31 14:20 ../lib/libncbimla.a 931 cc -o Psequin -I. -fast -I../include -L../lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequinx.c \ 932 -lncbicn3d -lncbidesk -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lncbimla \ 933 -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibnet -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 934 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 935 #define DEL ((Uint1)2) 936 ------------^ 937 cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 938 #define LAST ( (Uint1)1) 939 -------------^ 940 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 941 #define DEL ((Uint1)2) 942 ------------^ 943 cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ. The redefinition is now in effect. 944 #define DEL ((Uint1)2) 945 ------------^ 946 cc -o netentcf -fast -I../include -L../lib -DWIN_MOTIF netentcf.c -lvibnet -lncbidesk -lvibrant -lncbitool -lncbicdr -lncbiNacc -lnetentr -lnetcli -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 947 cc -o Nentrez -fast -I../include -L../lib -DWIN_MOTIF entrez.c -lvibnet -lncbicn3d -lncbidesk -lncbimmdb -lncbitool -lncbiNacc -lnetentr -lnetcli -lncbiacc -lvibrant -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 948 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c 949 cc -o Cn3D -fast -I../include -L../lib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3d -lncbidesk \ 950 -lncbimmdb -lncbitool -lncbiNacc -lnetentr -lnetcli \ 951 -lvibrant -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 952 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c 953 cc -o udv -fast -I../include -L../lib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk \ 954 -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lncbiobj -lncbi \ 955 -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 956 cc -fast -c -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c 957 cc -o ddv -fast -I../include -L../lib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk \ 958 -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lncbiobj -lncbi \ 959 -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm 960 cc -g -o blastcl3 -fast -I../include -L../lib -DWIN_MOTIF blastcl3.c -lnetblast -lncbitool -lnetcli -lncbiobj -lncbi -lm 961 cc: Warning: File not optimized; use -g3 if both optimization and debug wanted. 962 putting date stamp to the file ../VERSION 963 ********************************************************* 964 *The new binaries are located in ./ncbi/build/ directory* 965 ********************************************************* 966 annie|/work/toolbox|509> exit 967 exit 968 969 script done on Mon Jan 31 14:41:13 2000 970 971 If all is correct, you will find newly built executables in 972 the directory ./ncbi/build/ 973 974 Good luck! 975 976 977 ======================================================================= 978 $Id: readme.unx,v 6.23 2005/07/26 14:40:11 lavr Exp $ 979 =======================================================================
|
This page was automatically generated by the
LXR engine.
Visit the LXR main site for more information. |