NCBI C Toolkit Cross Reference

C/errmsg/a2ferr.msg

  1 MODULE a2ferr
  2 
  3 $$ DATE, 1
  4 
  5 $^   IllegalDate, 1, SEV_WARNING
  6 Date not in dd-mmm-yyy format
  7 $^   Create_after_update, 2, SEV_WARNING
  8 Standard create date after update date.
  9 
 10 
 11 $$ SEGMENT, 2
 12 $^   LocalSegEntry, 1, SEV_WARNING
 13 The Segmented set (GenBank) that is declared has some 
 14 local members.  That is, if there 6 members declared,
 15 The set might only have:
 16  1 of 6, 
 17  2 of 6, 
 18  4 of 6, 
 19  5 of 6 and
 20  6 of 6, and thus be missing 3 of 6.
 21    Another possible problem is there could be a line:
 22       "3 of 5", instad of "3 of 6"
 23 $^   MoreThan1000Segs, 2, SEV_INFO
 24 asn2ff is not equipped, as of 8/94, to handle more than 1000 segments.
 25 
 26 
 27 
 28 $$ ACCESSION, 3
 29 $^   BadAccessNum, 1, SEV_ERROR
 30 Accession must be upper case letter followed by 5 digits.
 31 
 32 $^   NoAccessNum, 2, SEV_ERROR
 33 No accession number could be found for this entry. The line number
 34 given is only approximate.
 35 
 36 $$ LOCUS, 4
 37 $^   ChangedLocusName, 1, SEV_ERROR
 38 ???Change this later on.
 39 For GenBank in a segmented set, it is an error if the segment number 
 40 can not be found at the end of the LOCUS name.  So a LOCUS name
 41 in SEGMENT 2 of 10 must end in 02, as ABCD02.
 42 
 43 $^   BadLocusName, 2, SEV_ERROR
 44 There are multiple possible ways to get this error message.
 45 In all formats, this identifier must have either digits or
 46 uppercase letters.
 47 For Swiss-Prot, the rules are more complicated:
 48 Locus name consists of up to 10 uppercase alphanumeric characters
 49       rule: X_Y format 
 50          X is a mnemonic code, up to 4 alphanumeric characters to represent
 51              the protein name.
 52          Y is a mnemonic species identification code of at most 5 
 53              alphanumeric characters to representing the biological source of
 54              the protein
 55 
 56 $^   LocusNameCollision, 3, SEV_WARNING
 57 The Locus name in this entry conflicts with anothe name in the database.
 58 
 59 $^   NoLocusName, 8, SEV_ERROR
 60 No token after 'LOCUS' found in GenBank format.
 61 
 62 $$ REFERENCE, 5
 63 $^   NoPageNumbering, 1, SEV_WARNING
 64 $^   IllegalPageRange, 2, SEV_WARNING
 65 There are many classes of problems that can give this error message, some
 66 of which are really warnings to have a human take a closer look:
 67   Total pages more than ....   means that the total number in the
 68                                article is greater than normal.  This
 69                                is usually caused by a typographical error.
 70   Page number may invert . . .  it looks like the first page is greater
 71                                that the last page.
 72   First-page contains  . . .   Although this is possible in the 
 73   non-digit character          bibliographic world, it is often
 74     or last-page               caused by an error.
 75 $^   YearEquZero, 3, SEV_WARNING
 76 $^   IllegalDate, 4, SEV_WARNING
 77 $^   Patent, 5, SEV_WARNING
 78 $^   Journal, 6, SEV_WARNING
 79 $^   Thesis, 7, SEV_WARNING
 80 $^   Book, 8, SEV_WARNING
 81 $^   DirectSubmission, 9, SEV_WARNING
 82 $^   Illegalreference, 10, SEV_ERROR
 83 $^   NoAuthorName, 11, SEV_ERROR
 84 $^   NoJournalName, 12, SEV_ERROR
 85 $^   No_references, 13, SEV_ERROR
 86 $^   NoDateOnRef, 14, SEV_ERROR
 87 $^   DirSubInCitGen, 15, SEV_INFO
 88 $^   MuidZeroOnly, 16, SEV_WARNING
 89 $^   VolHasSuppl, 17, SEV_INFO
 90 $^   ParanInSupp, 18, SEV_INFO
 91 $^   NoValidRefs, 19, SEV_WARNING
 92 
 93 $$ FEATURE, 6
 94 $^   UnknownFeatureKey, 1, SEV_WARNING
 95 $^   non_pseudo, 2, SEV_INFO
 96 $^   Bad_location, 3, SEV_INFO
 97 $^   GcodeAndTTableClash, 4, SEV_WARNING
 98 Two conflicting translation values: one in Cdregion.code and one as a qualifier.
 99 $^   NoQualOnMiscFeat, 5, SEV_WARNING
100 $^   CodeBreakLoc, 6, SEV_WARNING
101 $^   Duplicated, 7, SEV_WARNING
102 $^   IdenticalGeneName, 8, SEV_WARNING
103 $^   NULLGeneLocus, 9, SEV_WARNING
104 $^   Dropped, 10, SEV_ERROR
105 
106 $$ ENTRY, 7
107 $^   Partial_peptide, 1, SEV_INFO
108 $^   No_valid_ref, 2, SEV_ERROR
109 $^   No_source_line, 3, SEV_WARNING
110 $^   OriginTooLong, 4, SEV_WARNING
111 $^   DroppedFromFlatfile, 5, SEV_ERROR
112 
113 $$ GI, 8
114 $^   No_GI_Number, 1, SEV_WARNING
115 No GI number was found.
116 
117 $$ PRINT, 9
118 $^   NullString, 1, SEV_WARNING
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