NCBI C Toolkit Cross Reference

C/desktop/biosrc.h

  1 /*   biosrc.h
  2 * ===========================================================================
  3 *
  4 *                            PUBLIC DOMAIN NOTICE
  5 *            National Center for Biotechnology Information (NCBI)
  6 *
  7 *  This software/database is a "United States Government Work" under the
  8 *  terms of the United States Copyright Act.  It was written as part of
  9 *  the author's official duties as a United States Government employee and
 10 *  thus cannot be copyrighted.  This software/database is freely available
 11 *  to the public for use. The National Library of Medicine and the U.S.
 12 *  Government do not place any restriction on its use or reproduction.
 13 *  We would, however, appreciate having the NCBI and the author cited in
 14 *  any work or product based on this material
 15 *
 16 *  Although all reasonable efforts have been taken to ensure the accuracy
 17 *  and reliability of the software and data, the NLM and the U.S.
 18 *  Government do not and cannot warrant the performance or results that
 19 *  may be obtained by using this software or data. The NLM and the U.S.
 20 *  Government disclaim all warranties, express or implied, including
 21 *  warranties of performance, merchantability or fitness for any particular
 22 *  purpose.
 23 *
 24 * ===========================================================================
 25 *
 26 * File Name:  biosrc.h
 27 *
 28 * Author:  Jonathan Kans
 29 *
 30 * Version Creation Date:   1/22/95
 31 *
 32 * $Revision: 6.12 $
 33 *
 34 * File Description: 
 35 *
 36 * Modifications:  
 37 * --------------------------------------------------------------------------
 38 * Date     Name        Description of modification
 39 * -------  ----------  -----------------------------------------------------
 40 *
 41 *
 42 * ==========================================================================
 43 */
 44 
 45 #ifndef _BIOSRC_
 46 #define _BIOSRC_
 47 
 48 #include <dlogutil.h>
 49 
 50 
 51 #ifdef __cplusplus
 52 extern "C" {
 53 #endif
 54 
 55 #define NUM_GENETIC_CODES 40
 56 
 57 extern Int2     numGeneticCodes;
 58 extern Int2     gcIdToIndex [NUM_GENETIC_CODES];
 59 extern Uint1    gcIndexToId [NUM_GENETIC_CODES];
 60 extern CharPtr  gcNames [NUM_GENETIC_CODES];
 61 
 62 extern Boolean LoadOrganismTable (void);
 63 extern void FreeOrganismTable (void);
 64 
 65 extern void SetupGeneticCodes (void);
 66 extern void FreeGeneticCodes (void);
 67 extern ValNodePtr GetGeneticCodeValNodeList (void);
 68 
 69 /*
 70  *  The BioSourceEditProcsPtr may be registered with a call to SetAppProperty
 71  *  e.g., SetAppProperty ("BioSourcEditForm", &biosrcprocs), where biosrcprocs
 72  *  is a persistent structure filled with parameters and callback function
 73  *  pointers specific for a given application.
 74  */
 75 
 76 typedef Boolean (*LookupTaxonomyProc) PROTO((Uint2 entityID));
 77 
 78 typedef struct biosrceditprocs {
 79   LookupTaxonomyProc   lookupTaxonomy;
 80 } BioSourceEditProcs, PNTR BioSourceEditProcsPtr;
 81 
 82 #define REGISTER_BIOSOURCE_DESC_EDIT ObjMgrProcLoad(OMPROC_EDIT,"Edit BioSource Desc","Biological Source",OBJ_SEQDESC,Seq_descr_source,OBJ_SEQDESC,Seq_descr_source,NULL,BioSourceGenFunc,PROC_PRIORITY_DEFAULT)
 83 #define REGISTER_BIOSOURCE_FEAT_EDIT ObjMgrProcLoad(OMPROC_EDIT,"Edit BioSource Feat","Biological Source",OBJ_SEQFEAT,FEATDEF_BIOSRC,OBJ_SEQFEAT,FEATDEF_BIOSRC,NULL,BioSourceGenFunc,PROC_PRIORITY_DEFAULT)
 84 
 85 extern DialoG CreateSimpleBioSourceDialog (GrouP h, CharPtr title);
 86 extern ForM CreateBioSourceDescForm (Int2 left, Int2 top, Int2 width,
 87                                      Int2 height, CharPtr title, ValNodePtr sdp,
 88                                      SeqEntryPtr sep, FormActnFunc actproc,
 89                                      BioSourceEditProcsPtr bepp);
 90 extern ForM CreateBioSourceFeatForm (Int2 left, Int2 top, Int2 width,
 91                                      Int2 height, CharPtr title, SeqFeatPtr sfp,
 92                                      SeqEntryPtr sep, FormActnFunc actproc,
 93                                      BioSourceEditProcsPtr bepp);
 94 
 95 extern DialoG BioSourceDialog (GrouP parent);
 96 
 97 extern Int2 LIBCALLBACK BioSourceGenFunc (Pointer data);
 98 extern Boolean BioSourceDialogToGenBankDivision (DialoG d, CharPtr div, size_t maxsize);
 99 
100 extern Boolean SetBioSourceDialogTaxName (DialoG d, CharPtr taxname);
101 
102 /* This structure should be passed in as userdata for
103  * RemoveTextFromTextFreeSubSourceModifiers, with the
104  * members all initialized to FALSE.
105  */
106 typedef struct modtextfix 
107 {
108   Boolean remove_this;
109   Boolean move_this;
110   Boolean remove_all_germline;
111   Boolean remove_all_transgenic;
112   Boolean remove_all_environmental;
113   Boolean remove_all_rearranged;
114   Boolean remove_all_metagenomic;
115   Boolean move_all_germline;
116   Boolean move_all_transgenic;
117   Boolean move_all_environmental;
118   Boolean move_all_rearranged;
119   Boolean move_all_metagenomic;
120 } ModTextFixData, PNTR ModTextFixPtr;
121 extern ModTextFixPtr ModTextFixNew (void);
122 extern void RemoveTextFromTextFreeSubSourceModifiers (BioSourcePtr biop, Pointer userdata);
123 extern EnumFieldAssocPtr GetSubSourceAndOrgModEnum (Boolean get_discouraged, Boolean get_discontinued);
124 extern EnumFieldAssocPtr GetModifiersEnum (Boolean get_subsource, Boolean get_orgmod, Boolean get_discouraged, Boolean get_discontinued);
125 
126 NLM_EXTERN ValNodePtr GetLocListForBioSource (BioSourcePtr biop);
127 
128 #ifdef __cplusplus
129 }
130 #endif
131 
132 #endif /* ndef _BIOSRC_ */
133 
134
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