NCBI C Toolkit Cross Reference

C/demo/checksub.c

  1 
  2 /*****************************************************************************
  3 *
  4 *   checksub.c
  5 *     reads a sequenct submission with the object loaders
  6 *
  7 *****************************************************************************/
  8 #include <objsub.h>
  9 
 10 #define NUMARGS 3
 11 Args myargs[NUMARGS] = {
 12         { "Input data", NULL, "Seq-submit", NULL, FALSE, 'i', ARG_DATA_IN, 0.0,0,NULL},
 13         { "Input data is binary", "F", NULL, NULL, TRUE , 'b', ARG_BOOLEAN, 0.0,0,NULL},
 14         { "Output data", "stdout", "Seq-submit", NULL, FALSE, 'o', ARG_DATA_OUT, 0.0,0,NULL}};
 15 
 16 Int2 Main(void)
 17 {
 18         AsnIoPtr aip, aipout;
 19         AsnTypePtr atp;
 20         static CharPtr intypes[2] = { "r", "rb" };
 21         Int2 intype;
 22         SeqSubmitPtr ssp;
 23 
 24     if (! SubmitAsnLoad())
 25         Message(MSG_FATAL, "Unable to load parse trees.");
 26 
 27         atp = AsnFind("Seq-submit");
 28         if (atp == NULL)
 29                 Message(MSG_FATAL, "Unable to find Seq-submit");
 30 
 31     if (! GetArgs("CheckSub 1.0", NUMARGS, myargs))
 32                 return 1;
 33 
 34         if (myargs[1].intvalue)        /* binary input is TRUE */
 35                 intype = 1;
 36         else
 37                 intype = 0;
 38 
 39         if ((aip = AsnIoOpen(myargs[0].strvalue, intypes[intype])) == NULL)
 40         {
 41                 Message(MSG_FATAL, "Couldn't open %s", myargs[0].strvalue);
 42                 return 1;
 43         }
 44 
 45         if ((aipout = AsnIoOpen(myargs[2].strvalue, "w")) == NULL)
 46         {
 47                 Message(MSG_ERROR, "Couldn't open %s", myargs[2].strvalue);
 48                 return 1;
 49         }
 50 
 51         ssp = SeqSubmitAsnRead(aip, NULL);
 52         if (ssp == NULL)
 53                 Message(MSG_FATAL, "Couldn't read input file");
 54         AsnIoClose(aip);
 55 
 56         if (! SeqSubmitAsnWrite(ssp, aipout, NULL))
 57                 Message(MSG_FATAL, "Couldn't write output file");
 58 
 59         AsnIoClose(aipout);
 60         SeqSubmitFree(ssp);
 61 
 62         return 0;
 63 }
 64 
 65

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