NCBI C Toolkit Cross Reference

C/data/KSkyte.flt

  1 ;Hydropathy      ; 16 character descriptor
  2 ;2               ; 1=Nucleic  2=Protein
  3 1                ; 1=Filter   2-64=No. Pos. in Matrix
  4 19               ; 3-256=Filter Window  0-100=Percent Cutoff Matrix Output
  5    1.800   A  Ala
  6   -3.500   BB Asx
  7    2.500   C  Cys   Note: Columns 1-8 must contain 1 numeric value only
  8   -3.500   D  Asp
  9   -3.500   E  Glu   Note: This file is required for amphpathic helic
 10    2.800   F  Phe
 11   -0.400   G  Gly
 12   -3.200   H  His
 13    4.500   I  Ile
 14   -3.900   K  Lys
 15    3.800   L  Leu
 16    1.900   M  Met
 17   -3.500   N  Asn
 18   -1.600   P  Pro
 19   -3.500   Q  Gln
 20   -4.500   R  Arg
 21   -0.800   S  Ser
 22   -0.700   T  Thr
 23    4.200   V  Val
 24   -0.900   W  Trp
 25   -0.490   X- Unk
 26   -1.300   Y  Tyr
 27   -3.500   ZZ Glx
 28   -0.490   ** ***
 29 ;Hydropathy - Kyte and Doolittle (Hydrophobicity Index)
 30 ;A window of 19 residues is the published (and recomended) value
 31 ;for calculating the moving average to find membrane spanning regions

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