NCBI C Toolkit Cross Reference

   /*   cn3dopen.h
   * ===========================================================================
   *
   *                            PUBLIC DOMAIN NOTICE
   *            National Center for Biotechnology Information (NCBI)
   *
   *  This software/database is a "United States Government Work" under the
   *  terms of the United States Copyright Act.  It was written as part of
   *  the author's official duties as a United States Government employee and
  *  thus cannot be copyrighted.  This software/database is freely available
  *  to the public for use. The National Library of Medicine and the U.S.
  *  Government do not place any restriction on its use or reproduction.
  *  We would, however, appreciate having the NCBI and the author cited in
  *  any work or product based on this material
  *
  *  Although all reasonable efforts have been taken to ensure the accuracy
  *  and reliability of the software and data, the NLM and the U.S.
  *  Government do not and cannot warrant the performance or results that
  *  may be obtained by using this software or data. The NLM and the U.S.
  *  Government disclaim all warranties, express or implied, including
  *  warranties of performance, merchantability or fitness for any particular
  *  purpose.
  *
  * ===========================================================================
  *
  * File Name:  cn3dopen.h
  *
  * Author:  Christopher Hogue
  *
  * Version Creation Date:   1/31/96
  *
  * $Revision: 6.17 $
  *
  * File Description: Cn3d file opening routines 
  *                   
  *
  * Modifications:  
  * --------------------------------------------------------------------------
  * Date     Name        Description of modification
  * -------  ----------  -----------------------------------------------------
  * $Log: cn3dopen.h,v $
  * Revision 6.17  2000/07/08 20:43:57  vakatov
  * Get all "#include" out of the 'extern "C" { }' scope;  other cleanup...
  *
  * Revision 6.16  2000/06/16 14:57:03  lewisg
  * move entrez calls out of desktop
  *
  * Revision 6.15  2000/05/15 23:39:34  lewisg
  * shred cblast, add menu items for gapped/ungapped, fix pdbheaders
  *
  * Revision 6.14  2000/04/03 21:05:53  lewisg
  * fix launch of cn3d from sequin
  *
  * Revision 6.13  2000/03/27 22:15:05  lewisg
  * add show/hide row dialog
  *
  * Revision 6.12  2000/03/24 20:34:57  lewisg
  * add blast from file, bug fixes, get rid of redundant code, etc.
  *
  * Revision 6.11  2000/03/20 18:18:33  thiessen
  * fixed header problem causing network unavailability
  *
  * Revision 6.10  2000/03/18 00:06:00  lewisg
  * add blast, new help, new menus
  *
  * Revision 6.9  2000/03/01 22:49:41  lewisg
  * import bioseq, neatlyindex, get rid of dead code
  *
  * Revision 6.8  2000/01/21 15:59:05  lewisg
  * add check for binary/ascii files
  *
  * Revision 6.7  2000/01/04 15:55:51  lewisg
  * don't hang on disconnected network and fix memory leak/hang at exit
  *
  * Revision 6.6  1999/10/29 14:15:30  thiessen
  * ran all Cn3D source through GNU Indent to prettify
  *
  * Revision 6.5  1999/08/04 21:18:01  lewisg
  * modularized open operations to allow sequin to launch cn3d
  *
  * Revision 6.4  1999/01/14 19:07:17  kans
  * network availability is configurable
  *
  * Revision 6.3  1998/06/29 19:28:02  lewisg
  * on the fly update of conservation color
  *
  * Revision 6.2  1998/04/28 19:38:41  lewisg
  * codewarrior fixes
  *
  * Revision 6.1  1998/04/28 15:14:31  lewisg
  * moved OpenMimeFileWithDeletion to cn3dopen
  *
  * Revision 6.0  1997/08/25 18:13:40  madden
  * Revision changed to 6.0
  *
  * Revision 5.0  1996/05/28 14:05:44  ostell
  * Set to revision 5.0
  *
   * Revision 1.1  1996/02/01  18:47:38  kans
  * Initial revision
  *
 *
 * ==========================================================================
 */
 
 /* cn3dopen.h */
 
 #ifndef _CN3DOPEN2_
 #define _CN3DOPEN2_ 1
 
 #include <objmime.h>
 #include <algorend.h>
 
 #ifdef __cplusplus
 extern "C" {
 #endif
 
 #define MAX_MDLNO 1000
 #define PRINT_FORM_MIME_NAME "Ncbi-mime-asn1"
 #define PRINT_FORM_BIOSTRUC "Biostruc"
 extern Boolean OpenMimeFileWithDeletion
     PROTO((CharPtr filename, Boolean removeIt));
 extern void LIBCALLBACK fnClearMarkedResidues
     PROTO((PFB pfbThis, Int4 iModel, Int4 iIndex, Pointer ptr));
 extern ValNodePtr fnMarkAlignedResidues
     PROTO(
         (PDNMS pdnmsMaster, PDNMS pdnmsSlave,
          BiostrucFeaturePtr pbsfThis));
 NLM_EXTERN Boolean MMDB_ReadMime(NcbiMimeAsn1Ptr mime);
 NLM_EXTERN void Cn3D_OpenEnd();
 NLM_EXTERN void Cn3D_OpenStart();
 NLM_EXTERN Boolean Cn3D_StartNet(Boolean UseNetwork);
 NLM_EXTERN void MMDB_OpenTraverse(PMSD pmsd);
 NLM_EXTERN void Cn3D_SetPars(PARS parsThis, PDNMS pdnms);
 
 extern Boolean Cn3D_UsingEntrez(void);
 extern Boolean Cn3D_EntrezOn(void);
 
 /*******************************************************************************
 
 Function : Cn3D_BlastDlg()
   
 Purpose : Blast alignment dialog for multiple alignment
   
 Parameters : i; menu
 
 *******************************************************************************/
 NLM_EXTERN void Cn3D_BlastDlg(IteM i);
 
 /*****************************************************************************
 
 Function: Cn3D_UseNetwork()
 
 Purpose:  Determines if Cn3D should use the network
   
 Returns:  TRUE if yes
 
 *****************************************************************************/
 NLM_EXTERN Boolean Cn3D_CheckNetworkUse();
 
 /*******************************************************************************
 
   Function : Cn3D_ImportBioseq()
   
   Purpose : Import a single bioseq via the net
 
 *******************************************************************************/
 NLM_EXTERN void Cn3D_ImportBioseq(IteM i);
 NLM_EXTERN void Cn3D_ImportBioseqGap(IteM i);
 NLM_EXTERN void Cn3D_OpenBiostruc(IteM i);
 NLM_EXTERN void Cn3D_NetOpenBiostruc(IteM i);
 
 /*******************************************************************************
 
   Function : Cn3D_ImportBioseqFile()
   
   Purpose : Import a single bioseq from a fasta file
 
 *******************************************************************************/
 NLM_EXTERN void Cn3D_ImportBioseqFile(IteM i);
 NLM_EXTERN void Cn3D_ImportBioseqFileGap(IteM i);
 
 NLM_EXTERN Int4 Cn3D_Accession2Gi (CharPtr string, Boolean IsAmino);
 
 #ifdef __cplusplus
 }
 #endif
 #endif