NCBI C Toolkit Cross Reference

C/cn3d/cn3dmsg.h

  1 /*   cn3dmsg.h
  2 * ===========================================================================
  3 *
  4 *                            PUBLIC DOMAIN NOTICE
  5 *            National Center for Biotechnology Information (NCBI)
  6 *
  7 *  This software/database is a "United States Government Work" under the
  8 *  terms of the United States Copyright Act.  It was written as part of
  9 *  the author's official duties as a United States Government employee and
 10 *  thus cannot be copyrighted.  This software/database is freely available
 11 *  to the public for use. The National Library of Medicine and the U.S.
 12 *  Government do not place any restriction on its use or reproduction.
 13 *  We would, however, appreciate having the NCBI and the author cited in
 14 *  any work or product based on this material
 15 *
 16 *  Although all reasonable efforts have been taken to ensure the accuracy
 17 *  and reliability of the software and data, the NLM and the U.S.
 18 *  Government do not and cannot warrant the performance or results that
 19 *  may be obtained by using this software or data. The NLM and the U.S.
 20 *  Government disclaim all warranties, express or implied, including
 21 *  warranties of performance, merchantability or fitness for any particular
 22 *  purpose.
 23 *
 24 * ===========================================================================
 25 *
 26 * File Name:  cn3dmsg.h
 27 *
 28 * Author: Yanli Wang
 29 *
 30 * Version Creation Date:   3/26/98
 31 *
 32 * File Description: Main functions for building up cn3d/salsa communication
 33 *
 34 * Modifications:
 35 * $Log: cn3dmsg.h,v $
 36 * Revision 6.55  2000/03/18 00:06:00  lewisg
 37 * add blast, new help, new menus
 38 *
 39 * Revision 6.54  2000/02/07 20:17:37  lewisg
 40 * minor bug fixes, use gui font for win32
 41 *
 42 * Revision 6.53  2000/01/06 00:04:42  lewisg
 43 * selection bug fixes, update message outbound, animation APIs moved to vibrant
 44 *
 45 * Revision 6.52  1999/12/28 15:08:44  lewisg
 46 * remove remaining mediainfo code
 47 *
 48 * Revision 6.51  1999/12/01 16:15:54  lewisg
 49 * interim checkin to fix blocking memory leak
 50 *
 51 * Revision 6.50  1999/11/22 14:46:44  thiessen
 52 * moved _OPENGL code blocks to only vibrant and ncbicn3d libraries
 53 *
 54 * Revision 6.49  1999/11/10 23:19:41  lewisg
 55 * rewrite of selection code for ddv
 56 *
 57 * Revision 6.48  1999/11/03 18:15:10  kans
 58 * added prototypes needed by other files
 59 *
 60 * Revision 6.47  1999/10/29 14:15:29  thiessen
 61 * ran all Cn3D source through GNU Indent to prettify
 62 *
 63 * Revision 6.46  1999/10/05 23:18:24  lewisg
 64 * add ddv and udv to cn3d with memory management
 65 *
 66 * Revision 6.45  1999/09/21 18:09:15  lewisg
 67 * binary search added to color manager, various bug fixes, etc.
 68 *
 69 * Revision 6.44  1999/08/04 21:19:46  lewisg
 70 * modularized open operations to allow sequin to launch cn3d
 71 *
 72 * Revision 6.43  1999/07/09 20:50:55  ywang
 73 * set highlight color for salsa in Cn3dObjRegiste
 74 *
 75 * Revision 6.42  1999/07/07 20:45:37  ywang
 76 * clear domaindata, mediadata, special feature before reading in new data in cn3d
 77 *
 78 * Revision 6.41  1999/04/06 20:12:57  lewisg
 79 * more opengl
 80 *
 81 * Revision 6.40  1999/03/30 22:36:19  ywang
 82 * add functions to color salsa for NcbiMimeAsn1_strucseqs & code reorganization
 83 *
 84 * Revision 6.39  1999/03/22 22:41:14  ywang
 85 * remove argument in MediaObjSelect
 86 *
 87 * Revision 6.38  1999/02/12 15:34:01  ywang
 88 * include Cn3DSendColorMsg
 89 *
 90 * Revision 6.37  1999/02/11 22:40:15  ywang
 91 * rename functions
 92 *
 93 * Revision 6.36  1999/02/11 18:48:15  lewisg
 94 * delete color index functions
 95 *
 96 * Revision 6.35  1999/02/10 23:49:43  lewisg
 97 * use RGB values instead of indexed palette
 98 *
 99 * Revision 6.34  1999/01/20 22:57:25  ywang
100 * customize color for secondary structure & rearrange Option menu
101 *
102 * Revision 6.33  1999/01/20 16:06:48  durand
103 * move mediainfo to salmedia.h
104 *
105 * Revision 6.32  1998/12/16 22:49:39  ywang
106 * fix compiling warnings on Win32
107 *
108  * Revision 6.31  1998/12/16  19:32:56  ywang
109  * improve highlight residues function when rerendering
110  *
111  * Revision 6.30  1998/10/27  15:55:52  ywang
112  * add functions for testing color by sequence conservation
113  *
114  * Revision 6.29  1998/10/19  20:16:06  ywang
115  * add function FillSeqinfoForSeqEditViewProcs so that salsa can get color array
116  *
117  * Revision 6.28  1998/10/19  17:43:03  kans
118  * prototype needed for RealColorSalsa
119  *
120 * Revision 6.27  1998/10/16 22:06:08  ywang
121 * make global color array for sequence display
122 *
123  * Revision 6.26  1998/09/23  22:09:42  ywang
124  * to record checkin log
125  *
126 * ===========================================================================  */
127 
128 #ifndef _CN3DMSG_
129 #define _CN3DMSG_ 1
130 
131 #include <ncbi.h>
132 #include <objseq.h>
133 #include <objmgr.h>
134 #include <objfdef.h>
135 #include <gather.h>
136 #include <vibrant.h>
137 #include <salsa.h>
138 #include <salmedia.h>
139 #include <ddvcolor.h>
140 
141 #include <mmdbapi1.h>
142 
143 #ifdef __cplusplus
144 extern "C" {
145 #endif
146 
147 
148 #define REGISTER_BIOSEQ_BIOSTRUC_MEDIA ObjMgrProcLoad(OMPROC_VIEW, "Seq-Struc Communication", "Media", OBJ_BIOSEQ, 0, OBJ_BIOSEQ, 0, NULL, SeqStrucMediaFunc, 0)
149 #define REGISTER_SEQANNOT_BIOSTRUC_MEDIA ObjMgrProcLoad(OMPROC_VIEW, "Cn3D SeqAnnot", "Media", OBJ_SEQANNOT, 0, OBJ_SEQANNOT, 0, NULL, Cn3D_AnnotEditFunc, 0)
150 
151 /*****************************************************************************
152 
153 Function: Cn3D_LaunchSeqEntry()
154 
155 Purpose: Launch the Bioseq viewer on all bioseqs contained in a SeqEntry.
156 
157 Parameters: pvnsep, the valnode list of SeqEntries
158 
159 *****************************************************************************/
160 
161 void Cn3D_LaunchSeqEntry(ValNode * pvnsep);
162 
163 
164 /*****************************************************************************
165 
166 Function: Cn3D_RegisterSeqEntry()
167 
168 Purpose: Adds a message func to the SeqEntry and makes it
169      OM_OPT_FREE_IF_NO_VIEW
170 
171 Parameters: pvnsep, a valnode list of SeqEntries
172 
173 *****************************************************************************/
174 
175 void Cn3D_RegisterSeqEntry(ValNode * pvnsep);
176 
177 
178 /*****************************************************************************
179 
180 Function: Cn3D_LaunchSeqAnnot()
181 
182 Purpose: Launch the SeqAlign viewer on all SeqAligns contained in a SeqAnnot.
183 
184 Parameters: sap, the SeqAnnot
185 
186 *****************************************************************************/
187 
188 void Cn3D_LaunchSeqAnnot(SeqAnnot * sap);
189 
190 
191 /*****************************************************************************
192 
193 Function: Cn3D_RegisterSeqAnnot()
194 
195 Purpose: Adds a message func to the SeqAnnot and makes it
196      OM_OPT_FREE_IF_NO_VIEW
197 
198 Parameters: sap, the SeqAnnot pointer
199 
200 *****************************************************************************/
201 
202 void Cn3D_RegisterSeqAnnot(SeqAnnot *sap, Boolean Neat, Boolean IBM);
203 
204 
205 extern Int2 LIBCALLBACK SeqStrucMediaFunc PROTO((Pointer data));
206 extern void MediaObjSelect(PDNMG pdnmgThis, Boolean highlight);
207 extern void MediaHL(SelStructPtr sel, Boolean highlight);
208 extern void fnPreCHLresidue(PDNMG pdnmgThis, Boolean highlight);
209 extern PDNMM FindMM(void);
210 extern void DoCHighlightSeg(PFB pfbThis, Int4 iModel, Int4 iIndex,
211                             Pointer ptr, Boolean highlight);
212 extern void LaunchMediaViewer(BioseqPtr bsp);
213 extern void SalsaRegister(void);
214 extern void Cn3dObjMgrGetSelected(void);
215 extern void DoMediaHL(PMMD pmmdThis, Int4 from, Int4 to,
216                       Boolean highlight);
217 extern void LaunchSequenceWindow(void);
218 extern void LIBCALLBACK Cn3DCheckAndDoHighlight
219     PROTO((PFB pfbThis, Int4 iModel, Int4 iIndex, Pointer ptr));
220 
221 extern void Cn3D_RegisterColor(void);
222 
223 
224 /*****************************************************************************
225 
226 Function: Cn3D_AnnotEditFunc()
227 
228 Purpose: The object manager callback to register a SeqAnnot.
229 
230 Parameters: data, the OMProcControlPtr.
231 
232 Returns: OM_MSG_RET_*
233 
234 *****************************************************************************/
235 
236 extern Int2 LIBCALLBACK Cn3D_AnnotEditFunc(Pointer data);
237 
238 
239 /*****************************************************************************
240 
241 Function: Cn3D_SendUpdate()
242 
243 Purpose: Sends an update message to everyone about everything.
244   
245 *****************************************************************************/
246 
247 NLM_EXTERN void Cn3D_SendUpdate();
248 
249 
250 
251 
252 #ifdef __cplusplus
253 }
254 #endif
255 #endif                          /* _CN3DMSG_ */
256
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