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1 /*
2 * ===========================================================================
3 *
4 * COPYRIGHT NOTICE
5 * National Center for Biotechnology Information
6 *
7 * This software/database is a "United States Government Work" under the
8 * terms of the United States Copyright Act. It was written as part of
9 * the author's official duties as a Government employee and thus cannot
10 * be copyrighted. This software/database is freely available to the
11 * public for use without a copyright notice. Restrictions cannot be
12 * placed on its present or future use.
13 *
14 * Although all reasonable efforts have been taken to ensure the accuracy
15 * and reliability of the software and data, the National Library of
16 * Medicine (NLM) and the U. S. Government do not and cannot warrant the
17 * performance or results that may be obtained by using this software or
18 * data. The NLM and the U. S. Government disclaim all warranties as to
19 * performance, merchantability or fitness for any particular purpose.
20 *
21 * Please see that the author is suitably cited in any work or product
22 * based on this material.
23 *
24 * ===========================================================================
25 *
26 * RCS $Id: objentr.c,v 6.4 1998/08/24 18:42:17 kans Exp $
27 *
28 * Author: Greg Schuler, Jim Ostell, Jonathan Epstein
29 *
30 * Version Creation Date: 6/28/94
31 *
32 * File Description: ASN.1 object support for EntrezInfo data block & docsums.
33 *
34 * Modifications:
35 * --------------------------------------------------------------------------
36 * Rev Date Name Description of modification
37 * ---- -------- ---------- ----------------------------------------------
38 * 1.1 06-28-94 Schuler This file created from definitions extracted
39 * from accentr.h
40 * 1.2 08-22-94 Schuler Added handling for new fields.
41 *
42 * 05-19-95 Schuler Added rcs Log directive for automatic insertion of
43 * modification comments.
44 *
45 * Revision $Log: objentr.c,v $
46 * Revision Revision 6.4 1998/08/24 18:42:17 kans
47 * Revision fixed -v -fd warnings
48 * Revision
49 * Revision Revision 6.3 1998/03/26 23:23:16 yaschenk
50 * Revision adding CdRomAsnLoad() as extern function to load Asn tree
51 * Revision
52 * Revision Revision 6.2 1997/10/10 20:19:13 kans
53 * Revision div->tag now filled by StringNCpy_0
54 * Revision
55 * Revision Revision 6.1 1997/10/07 22:09:48 volodya
56 * Revision new data fields (entrezDate, pStatus, pLanguage, pPubType) have added to DocSum structure
57 * Revision
58 * Revision Revision 6.0 1997/08/25 18:13:16 madden
59 * Revision Revision changed to 6.0
60 * Revision
61 * Revision Revision 5.4 1997/06/26 21:55:46 vakatov
62 * Revision [PC] DLL'd "ncbicdr.lib", "ncbiacc.lib", "ncbinacc.lib" and "ncbicacc.lib"
63 * Revision
64 * Revision Revision 5.3 1997/05/01 21:19:41 epstein
65 * Revision fix leak detected by Purify
66 * Revision
67 * Revision 5.2 1997/03/05 19:23:43 brandon
68 * minor fix.
69 *
70 * Revision 5.1 1997/03/05 19:00:09 brandon
71 * added objet loaders for expanded EntrezInfo structure (including link data)
72 *
73 * Revision 5.0 1996/05/28 13:55:34 ostell
74 * Set to revision 5.0
75 *
76 * Revision 4.1 1995/10/17 20:26:29 epstein
77 * remove to free dsp->extra in DocSumFree
78 *
79 * Revision 4.0 1995/07/26 13:50:32 ostell
80 * force revision to 4.0
81 *
82 * Revision 1.8 1995/07/11 14:54:53 epstein
83 * move DocSumFree from accentr.c and fix docsum object loaders
84 *
85 * Revision 1.7 1995/07/11 12:25:14 epstein
86 * add DocSum object loaders
87 *
88 * Revision 1.6 1995/05/16 14:36:20 schuler
89 * Automatic comment insertion enabled
90 *
91 *
92 * ==========================================================================
93 */
94
95 #define REVISION_STR "$Revision: 6.4 $"
96
97
98
99 /*** #define WRITE_NEW_STUFF ***/
100
101
102 #include <cdrom.h>
103 #include <objentr.h>
104 #include <accentr.h>
105
106 static Boolean NEAR FieldDataAsnWrite PROTO((EntrezFieldDataPtr p, AsnIoPtr stream, AsnType *type_start));
107 static Boolean NEAR TypeDataAsnWrite PROTO((EntrezTypeDataPtr p, AsnIoPtr stream, AsnType *type_start, int num_fields));
108
109 static EntrezTypeInfo* EntrezTypeInfo_AsnRead (EntrezTypeInfo *tinf, AsnIo *aio, AsnType *type);
110 static Boolean EntrezTypeInfo_AsnWrite (const EntrezTypeInfo *tinf, AsnIo *aio, AsnType *type);
111
112 static EntrezFieldInfo* EntrezFieldInfo_AsnRead (EntrezFieldInfo *fld, AsnIo *stream, AsnType *type0);
113 static Boolean EntrezFieldInfo_AsnWrite (const EntrezFieldInfo *fld, AsnIo *stream, AsnType *type);
114
115 static EntrezLinkInfo* EntrezLinkInfo_AsnRead (EntrezLinkInfo *fld, AsnIo *stream, AsnType *type0);
116 static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *fld, AsnIo *stream, AsnType *type);
117
118 #define EntrezDivInfo_New(a) EntrezDivInfo_Construct(MemNew(sizeof(EntrezDivInfo),a))
119 #define EntrezDivInfo_Free(a) (void)MemFree(EntrezDivInfo_Desctuct(a))
120 static EntrezDivInfo* EntrezDivInfo_Construct (EntrezDivInfo *div, int type_ct);
121 static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div);
122 static EntrezDivInfo* EntrezDivInfo_AsnRead (EntrezDivInfo *div, AsnIo *ain, AsnType *type_start);
123 static Boolean EntrezDivInfo_AsnWrite (const EntrezDivInfo *div, AsnIo *ain, AsnType *type_start);
124
125 static CdDate * CdDate_AsnRead (CdDate *date, AsnIo *ain, AsnType *type_start);
126 static Boolean CdDate_AsnWrite (const CdDate *date, AsnIo *aout, AsnType *atp);
127
128
129 #define Boolean_AsnWrite(a,b,c,d) \
130 { if (d) \
131 { DataVal val; val.boolvalue = (a); \
132 (d) = AsnWrite(b,c,&val); } }
133
134 #define Integer_AsnWrite(a,b,c,d) \
135 { if (d) \
136 { DataVal val; val.intvalue = (a); \
137 (d) = AsnWrite(b,c,&val); } } \
138
139 #define String_AsnWrite(a,b,c,d) \
140 { if ((d) && ((a)!=NULL) ) \
141 { DataVal val; val.ptrvalue = (void*)(a); \
142 (d) = AsnWrite(b,c,&val); } } \
143
144
145
146 static int _type_ct;
147 static int _fld_ct;
148 static int _div_ct;
149
150 static void LIBCALL EntrezLinkInfoFree(EntrezLinkInfo *LinkInfo)
151 {
152 MemFree(LinkInfo -> tag);
153 MemFree(LinkInfo -> name);
154 MemFree(LinkInfo -> descr);
155 MemFree(LinkInfo);
156 }
157
158
159 /*****************************************************************************
160 *
161 * NetEntAsnLoad()
162 *
163 *****************************************************************************/
164
165 static Boolean loaded = FALSE;
166
167 NLM_EXTERN Boolean LIBCALL
168 CdRomAsnLoad(void)
169 {
170 if (loaded)
171 return TRUE;
172 loaded = TRUE;
173
174 if (! AllObjLoad()) {
175 loaded = FALSE;
176 return FALSE;
177 }
178 if (! AsnLoad()) {
179 loaded = FALSE;
180 return FALSE;
181 }
182
183 return TRUE;
184 }
185
186
187
188 /*****************************************************************************
189 *
190 * ASN.1 object support:
191 *
192 *
193 * EntrezInfoFree
194 * EntrezInfoAsnRead
195 * EntrezInfoAsnWrite
196 *
197 *****************************************************************************/
198
199 NLM_EXTERN EntrezInfoPtr LIBCALL EntrezInfoFree (EntrezInfoPtr info)
200 {
201 Int2 i;
202
203 if (info == NULL)
204 return NULL;
205
206 MemFree(info->volume_label);
207 for (i = 0; i < info->type_count; i++)
208 MemFree(info->types[i].fields);
209 MemFree(info->types);
210 MemFree(info->descr);
211 MemFree(info->huff_left);
212 MemFree(info->huff_right);
213 if (info->type_names != NULL)
214 {
215 for (i = 0; i < info->type_count; i++)
216 MemFree(info->type_names[i]);
217 MemFree(info->type_names);
218 }
219 if (info->field_names != NULL)
220 {
221 for (i = 0; i < info->field_count; i++)
222 MemFree(info->field_names[i]);
223 MemFree(info->field_names);
224 }
225 for (i = 0; i < info -> link_count; i++)
226 EntrezLinkInfoFree(info -> link_info + i);
227 return MemFree(info);
228 }
229
230
231 NLM_EXTERN EntrezInfoPtr LIBCALL EntrezInfoAsnRead (AsnIo *stream, AsnType *type_start)
232 {
233 DataVal val;
234 AsnType *atp, *oldtype;
235 EntrezInfoPtr info;
236 EntrezTypeDataPtr currtdp = NULL;
237 EntrezFieldDataPtr currfdp = NULL;
238 EntrezTypeInfo *tinf;
239 EntrezFieldInfo *fld;
240 EntrezLinkInfo *link;
241 EntrezDivInfo *div;
242 Int2 typectr, fieldctr;
243 Int2 huff_left_ctr, huff_right_ctr;
244 int i;
245 size_t bytes;
246
247 if ((stream == NULL) || (! AsnLoad()))
248 return NULL;
249
250 if (type_start == NULL) /* Cdrom-inf ::= (self contained) */
251 atp = AsnReadId(stream, amp, CDROM_INF);
252 else
253 atp = AsnLinkType(type_start, CDROM_INF); /* link in local tree */
254 oldtype = atp;
255
256 AsnReadVal(stream, atp, &val); /* read the START_STRUCT */
257
258 info = (EntrezInfoPtr) MemNew(sizeof(EntrezInfo));
259 typectr = 0;
260 fieldctr = 0;
261 huff_left_ctr = 0;
262 huff_right_ctr = 0;
263
264 while ((atp = AsnReadId(stream, amp, atp)) != oldtype)
265 {
266 AsnReadVal(stream, atp, &val);
267
268 if (atp == CDROM_INF_volume_label)
269 info->volume_label = (CharPtr)val.ptrvalue;
270 else if (atp == CDROM_INF_version)
271 info->version = (short)val.intvalue;
272 else if (atp == CDROM_INF_issue)
273 info->issue = (short)val.intvalue;
274 else if (atp == CDROM_INF_format)
275 info->format = (short)val.intvalue;
276 else if (atp == CDROM_INF_descr)
277 info->descr = (char*)val.ptrvalue;
278 else if (atp == CDROM_INF_no_compression)
279 info->no_compression = val.boolvalue;
280 else if (atp == CDROM_INF_huff_count)
281 {
282 info->huff_count = (Int2)val.intvalue;
283 info->huff_left = (Int2Ptr) MemNew(sizeof(Int2) * info->huff_count);
284 info->huff_right = (Int2Ptr) MemNew(sizeof(Int2) * info->huff_count);
285 }
286 else if (atp == CDROM_INF_huff_left_E)
287 {
288 info->huff_left[huff_left_ctr] = (short)val.intvalue;
289 huff_left_ctr++;
290 }
291 else if (atp == CDROM_INF_huff_right_E)
292 {
293 info->huff_right[huff_right_ctr] = (short)val.intvalue;
294 huff_right_ctr++;
295 }
296 else if (atp == CDROM_INF_type_count)
297 {
298 info->type_count = (short)val.intvalue;
299 info->type_names = (char**) MemNew(sizeof(char*) * info->type_count);
300 info->types = (EntrezTypeData*) MemNew(sizeof(EntrezTypeData) * (size_t)info->type_count);
301 bytes = (size_t)info->type_count * sizeof(EntrezTypeInfo);
302 info->type_info = tinf = (EntrezTypeInfo*) MemNew(bytes);
303 }
304 else if (atp == CDROM_INF_type_names_E)
305 {
306 info->type_names[typectr] = (CharPtr)val.ptrvalue;
307 typectr++;
308 }
309 else if (atp == CDROM_INF_type_bucket_size)
310 info->type_bucket_size = (Int2)val.intvalue;
311 else if (atp == CDROM_INF_field_count)
312 {
313 info->field_count = (short)val.intvalue;
314 info->field_names = (char **) MemNew(sizeof(char*) * info->field_count);
315 bytes = (size_t)info->field_count * sizeof(EntrezFieldInfo);
316 info->field_info = fld = (EntrezFieldInfo*) MemNew(bytes);
317 }
318 else if (atp == CDROM_INF_link_count)
319 {
320 info->link_count = val.intvalue;
321 bytes = (size_t)info->link_count * sizeof(EntrezLinkInfo);
322 info->link_info = link = (EntrezLinkInfo*) MemNew(bytes);
323 }
324 else if (atp == CDROM_INF_field_names_E)
325 {
326 info->field_names[fieldctr] = (char*)val.ptrvalue;
327 fieldctr++;
328 }
329 else if (atp == CDROM_INF_field_bucket_size)
330 info->field_bucket_size = (short)val.intvalue;
331
332
333 else if (atp == CDROM_INF_types_E)
334 {
335 if (val.intvalue == START_STRUCT)
336 {
337 if (currtdp == NULL)
338 currtdp = info->types;
339 else
340 currtdp++;
341 currtdp->fields = (EntrezFieldDataPtr) MemNew(sizeof(EntrezFieldData) * info->field_count);
342 currfdp = NULL; /* reset field data chain */
343 }
344 }
345 else if (atp == TYPEDATA_fields_E)
346 {
347 if (val.intvalue == START_STRUCT)
348 {
349 if (currfdp == NULL)
350 currfdp = currtdp->fields;
351 else
352 currfdp++;
353 }
354 }
355 else if (atp == TYPEDATA_num)
356 currtdp->num = val.intvalue;
357 else if (atp == TYPEDATA_num_uids)
358 currtdp->num_uids = val.intvalue;
359 else if (atp == TYPEDATA_minuid)
360 currtdp->minuid = val.intvalue;
361 else if (atp == TYPEDATA_maxuid)
362 currtdp->maxuid = val.intvalue;
363 else if (atp == TYPEDATA_num_bucket)
364 currtdp->num_bucket = (Int2)val.intvalue;
365 else if (atp == FIELDDATA_num_terms)
366 currfdp->num_terms = val.intvalue;
367 else if (atp == FIELDDATA_num_bucket)
368 currfdp->num_bucket = (Int2) val.intvalue;
369
370 else if (atp == CDROM_INF_release_date)
371 CdDate_AsnRead(&(info->release_date),stream,atp);
372 else if (atp == CDROM_INF_close_date)
373 CdDate_AsnRead(&(info->close_date),stream,atp);
374
375 else if (atp == CDROM_INF_type_info_E)
376 EntrezTypeInfo_AsnRead(tinf++,stream,atp);
377 else if (atp == CDROM_INF_field_info_E)
378 EntrezFieldInfo_AsnRead(fld++,stream,atp);
379 else if (atp == CDROM_INF_link_info_E)
380 EntrezLinkInfo_AsnRead(link++,stream,atp);
381
382 else if (atp == CDROM_INF_div_count)
383 {
384 size_t bytes = (size_t)val.intvalue * sizeof(EntrezDivInfo);
385 info->div_info = div = (EntrezDivInfo*) MemNew(bytes);
386 info->div_count = (short)val.intvalue;
387 for (i=0; i<val.intvalue; ++i)
388 EntrezDivInfo_Construct(div++,info->type_count);
389 div = info->div_info;
390 }
391 else if (atp == CDROM_INF_div_info_E)
392 EntrezDivInfo_AsnRead(div++,stream,atp);
393
394 else
395 {
396 AsnKillValue(atp,&val);
397 }
398
399 }
400 AsnReadVal(stream, atp, &val); /* read the END_STRUCT */
401 AsnUnlinkType(type_start); /* unlink local tree */
402 return info;
403 }
404
405
406 NLM_EXTERN Boolean LIBCALL EntrezInfoAsnWrite (EntrezInfo *info, AsnIo *stream, AsnType *type_start)
407
408 {
409 DataVal val;
410 int i;
411 AsnType *atp;
412 Boolean retval = FALSE;
413
414 if ((stream == NULL) || (! AsnLoad()))
415 return FALSE;
416
417 atp = AsnLinkType(type_start, CDROM_INF); /* link local tree */
418
419 if (atp == NULL)
420 return FALSE;
421
422 if (info == NULL)
423 {
424 AsnNullValueMsg(stream, atp);
425 goto erret;
426 }
427
428 _type_ct = info->type_count;
429 _fld_ct = info->field_count;
430 _div_ct = info->div_count;
431
432 if (! AsnStartStruct(stream, atp))
433 goto erret;
434 val.ptrvalue = info->volume_label;
435 AsnWrite (stream, CDROM_INF_volume_label, &val);
436 val.intvalue = info->version;
437 AsnWrite (stream, CDROM_INF_version, &val);
438 val.intvalue = info->issue;
439 AsnWrite (stream, CDROM_INF_issue, &val);
440 val.intvalue = info->format;
441 AsnWrite (stream, CDROM_INF_format, &val);
442 val.ptrvalue = info->descr;
443 AsnWrite (stream, CDROM_INF_descr, &val);
444 val.boolvalue = info->no_compression;
445 AsnWrite (stream, CDROM_INF_no_compression, &val);
446
447 val.intvalue = info->huff_count;
448 AsnWrite (stream, CDROM_INF_huff_count, &val);
449 AsnStartStruct (stream, CDROM_INF_huff_left);
450 for (i = 0; i < info->huff_count; i++)
451 {
452 val.intvalue = info->huff_left[i];
453 AsnWrite(stream, CDROM_INF_huff_left_E, &val);
454 }
455 AsnEndStruct (stream, CDROM_INF_huff_left);
456 AsnStartStruct (stream, CDROM_INF_huff_right);
457 for (i = 0; i < info->huff_count; i++)
458 {
459 val.intvalue = info->huff_right[i];
460 AsnWrite(stream, CDROM_INF_huff_right_E, &val);
461 }
462 AsnEndStruct (stream, CDROM_INF_huff_right);
463
464 val.intvalue = info->type_count;
465 AsnWrite (stream, CDROM_INF_type_count, &val);
466 AsnStartStruct (stream, CDROM_INF_type_names);
467 for (i = 0; i < info->type_count; i++)
468 {
469 val.ptrvalue = info->type_names[i];
470 AsnWrite(stream, CDROM_INF_type_names_E, &val);
471 }
472 AsnEndStruct (stream, CDROM_INF_type_names);
473
474 val.intvalue = info->type_bucket_size;
475 AsnWrite (stream, CDROM_INF_type_bucket_size, &val);
476
477 val.intvalue = info->field_count;
478 AsnWrite (stream, CDROM_INF_field_count, &val);
479 AsnStartStruct (stream, CDROM_INF_field_names);
480 for (i = 0; i < info->field_count; i++)
481 {
482 val.ptrvalue = info->field_names[i];
483 AsnWrite(stream, CDROM_INF_field_names_E, &val);
484 }
485 AsnEndStruct (stream, CDROM_INF_field_names);
486
487 val.intvalue = info->field_bucket_size;
488 AsnWrite (stream, CDROM_INF_field_bucket_size, &val);
489
490 AsnStartStruct (stream, CDROM_INF_types);
491 for (i = 0; i < info->type_count; i++)
492 {
493 TypeDataAsnWrite (&info->types[i], stream, CDROM_INF_types_E,
494 info->field_count);
495 }
496 AsnEndStruct (stream, CDROM_INF_types);
497
498 #define WRITE_NEW_STUFF
499 #ifdef WRITE_NEW_STUFF
500
501 if (info->release_date.year != 0)
502 CdDate_AsnWrite(&info->release_date,stream,CDROM_INF_release_date);
503 if (info->close_date.year != 0)
504 CdDate_AsnWrite(&info->close_date,stream,CDROM_INF_close_date);
505
506 if (info->type_info != NULL)
507 {
508 AsnStartStruct(stream,CDROM_INF_type_info);
509 for (i=0; i<info->type_count; ++i)
510 EntrezTypeInfo_AsnWrite(&(info->type_info[i]),stream,CDROM_INF_type_info_E);
511 AsnEndStruct(stream,CDROM_INF_type_info);
512 }
513
514 if (info->field_info != NULL)
515 {
516 AsnStartStruct(stream,CDROM_INF_field_info);
517 for (i=0; i<info->field_count; ++i)
518 EntrezFieldInfo_AsnWrite(&(info->field_info[i]),stream,CDROM_INF_field_info_E);
519 AsnEndStruct(stream,CDROM_INF_field_info);
520 }
521
522 if (info->div_count > 0)
523 {
524 val.intvalue = info->div_count;
525 AsnWrite(stream,CDROM_INF_div_count,&val);
526 AsnStartStruct(stream,CDROM_INF_div_info);
527 for (i=0; i<info->div_count; ++i)
528 EntrezDivInfo_AsnWrite(&(info->div_info[i]),stream,CDROM_INF_div_info_E);
529 AsnEndStruct(stream,CDROM_INF_div_info);
530 }
531
532 #endif
533
534 if (! AsnEndStruct(stream, atp))
535 goto erret;
536
537 retval = TRUE;
538
539 erret:
540 AsnUnlinkType(type_start); /* unlink local tree */
541 return retval;
542 }
543
544
545 static Boolean NEAR FieldDataAsnWrite (EntrezFieldData *data, AsnIo *stream, AsnType *type_start)
546 {
547 DataVal val;
548 AsnType *atp;
549 Boolean retval = FALSE;
550
551 ASSERT(stream != NULL);
552
553 atp = AsnLinkType(type_start,FIELDDATA); /* link local tree */
554
555 if (atp == NULL)
556 return FALSE;
557
558 if (data == NULL)
559 {
560 AsnNullValueMsg(stream, atp);
561 goto erret;
562 }
563
564 if (! AsnStartStruct(stream, atp))
565 goto erret;
566 val.intvalue = data->num_terms;
567 AsnWrite (stream, FIELDDATA_num_terms, &val);
568 val.intvalue = data->num_bucket;
569 AsnWrite (stream, FIELDDATA_num_bucket, &val);
570
571 if (! AsnEndStruct(stream, atp))
572 goto erret;
573
574 retval = TRUE;
575
576 erret:
577 AsnUnlinkType(type_start); /* unlink local tree */
578 return retval;
579 }
580
581 static Boolean NEAR TypeDataAsnWrite (EntrezTypeData *data, AsnIoPtr stream,
582 AsnType *type_start, int num_fields)
583 {
584 DataVal val;
585 AsnType *atp;
586 int i;
587 Boolean retval = FALSE;
588
589 ASSERT(stream != NULL);
590
591 atp = AsnLinkType(type_start, TYPEDATA); /* link local tree */
592
593 if (atp == NULL)
594 return FALSE;
595
596 if (data == NULL)
597 {
598 AsnNullValueMsg(stream, atp);
599 goto erret;
600 }
601
602 if (! AsnStartStruct(stream, atp))
603 goto erret;
604 val.intvalue = data->num;
605 AsnWrite (stream, TYPEDATA_num, &val);
606 val.intvalue = data->num_uids;
607 AsnWrite (stream, TYPEDATA_num_uids, &val);
608 val.intvalue = data->minuid;
609 AsnWrite (stream, TYPEDATA_minuid, &val);
610 val.intvalue = data->maxuid;
611 AsnWrite (stream, TYPEDATA_maxuid, &val);
612 val.intvalue = data->num_bucket;
613 AsnWrite (stream, TYPEDATA_num_bucket, &val);
614 AsnStartStruct(stream, TYPEDATA_fields);
615 for (i=0; i<_fld_ct; ++i)
616 FieldDataAsnWrite (&data->fields[i], stream, TYPEDATA_fields_E);
617 AsnEndStruct(stream, TYPEDATA_fields);
618
619 if (! AsnEndStruct(stream, atp))
620 goto erret;
621
622 retval = TRUE;
623
624 erret:
625 AsnUnlinkType(type_start); /* unlink local tree */
626 return retval;
627 }
628
629
630 /* ========== EntrezTypeInfo ========== */
631
632 static EntrezTypeInfo* EntrezTypeInfo_AsnRead (EntrezTypeInfo *tinf, AsnIo *stream, AsnType *type0)
633 {
634 AsnType *type = type0;
635 DataVal val;
636 while ((type = AsnReadId(stream,amp,type)) != type0)
637 {
638 AsnReadVal(stream,type,&val);
639 if (type == TYPE_INFO_id)
640 tinf->id = (int) val.intvalue;
641 else if (type == TYPE_INFO_tag) {
642 strcpy(tinf->tag,(char*)val.ptrvalue);
643 MemFree((char*)val.ptrvalue);
644 } else if (type == TYPE_INFO_name)
645 tinf->name = (char*) val.ptrvalue;
646 else if (type == TYPE_INFO_descr)
647 tinf->descr = (char*) val.ptrvalue;
648 else if (type == TYPE_INFO_asntype)
649 tinf->asntype = (char*) val.ptrvalue;
650 else
651 AsnKillValue(type,&val);
652 }
653 AsnReadVal(stream,type,NULL); /* END STRUCT */
654 return tinf;
655 }
656
657 static Boolean EntrezTypeInfo_AsnWrite (const EntrezTypeInfo *tinf, AsnIo *stream, AsnType *type)
658 {
659 ASSERT(tinf != NULL);
660 ASSERT(stream != NULL);
661
662 if (AsnStartStruct(stream,type))
663 {
664 Boolean retval = TRUE;
665 Integer_AsnWrite(tinf->id,stream,TYPE_INFO_id,retval);
666 String_AsnWrite(tinf->tag,stream,TYPE_INFO_tag,retval);
667 String_AsnWrite(tinf->name,stream,TYPE_INFO_name,retval);
668 String_AsnWrite(tinf->descr,stream,TYPE_INFO_descr,retval);
669 String_AsnWrite(tinf->asntype,stream,TYPE_INFO_asntype,retval);
670 if (AsnEndStruct(stream,type))
671 return retval;
672 }
673 return FALSE;
674 }
675
676
677 /* ========== EntrezFieldInfo ========== */
678
679
680 static EntrezFieldInfo* EntrezFieldInfo_AsnRead (EntrezFieldInfo *fld, AsnIo *stream, AsnType *type0)
681 {
682 AsnType *type = type0;
683 DataVal val;
684 while ((type = AsnReadId(stream,amp,type)) != type0)
685 {
686 AsnReadVal(stream,type,&val);
687 if (type == FIELD_INFO_id)
688 fld->id = (int) val.intvalue;
689 else if (type == FIELD_INFO_tag)
690 strcpy(fld->tag,(char*)val.ptrvalue);
691 else if (type == FIELD_INFO_name)
692 fld->name = (char*) val.ptrvalue;
693 else if (type == FIELD_INFO_descr)
694 fld->descr = (char*) val.ptrvalue;
695 else if (type == FIELD_INFO_single_token)
696 fld->single_token = (unsigned) val.boolvalue;
697 else if (type == FIELD_INFO_has_special)
698 fld->has_special = (unsigned) val.boolvalue;
699 else if (type == FIELD_INFO_hier_avail)
700 fld->hier_avail = (unsigned) val.boolvalue;
701 else if (type == FIELD_INFO_hier_id)
702 fld->hier_id = (int) val.intvalue;
703 else if (type == FIELD_INFO_post_type)
704 fld->post_type = (PostType) val.intvalue;
705 else
706 AsnKillValue(type,&val);
707 }
708 AsnReadVal(stream,type,NULL); /* END STRUCT */
709 return fld;
710 }
711
712 static Boolean EntrezFieldInfo_AsnWrite (const EntrezFieldInfo *fld, AsnIo *stream, AsnType *type)
713 {
714 ASSERT(fld != NULL);
715 ASSERT(stream != NULL);
716
717 if (AsnStartStruct(stream,type))
718 {
719 Boolean retval = TRUE;
720 Integer_AsnWrite(fld->id,stream,FIELD_INFO_id,retval);
721 String_AsnWrite(fld->tag,stream,FIELD_INFO_tag,retval);
722 String_AsnWrite(fld->name,stream,FIELD_INFO_name,retval);
723 String_AsnWrite(fld->descr,stream,FIELD_INFO_descr,retval);
724 if (fld->single_token)
725 Boolean_AsnWrite(fld->single_token,stream,FIELD_INFO_single_token,retval);
726 if (fld->has_special)
727 Boolean_AsnWrite(fld->has_special,stream,FIELD_INFO_has_special,retval);
728 if (fld->hier_avail)
729 {
730 Boolean_AsnWrite(fld->hier_avail,stream,FIELD_INFO_hier_avail,retval);
731 Integer_AsnWrite(fld->hier_id,stream,FIELD_INFO_hier_id,retval);
732 }
733 if (fld->post_type != PostType_sort)
734 Integer_AsnWrite(fld->post_type,stream,FIELD_INFO_post_type,retval);
735 if (AsnEndStruct(stream,type))
736 return retval;
737 }
738 return FALSE;
739 }
740
741 static EntrezLinkInfo* EntrezLinkInfo_AsnRead (EntrezLinkInfo *link, AsnIo *stream, AsnType *type0)
742 {
743 AsnType *type = type0;
744 DataVal val;
745 while ((type = AsnReadId(stream,amp,type)) != type0)
746 {
747 AsnReadVal(stream,type,&val);
748 if (type == LINK_INFO_id)
749 link->id = (int) val.intvalue;
750 else if (type == LINK_INFO_tag)
751 strcpy(link->tag,(char*)val.ptrvalue);
752 else if (type == LINK_INFO_name)
753 link->name = (char*) val.ptrvalue;
754 else if (type == LINK_INFO_descr)
755 link->descr = (char*) val.ptrvalue;
756 else if (type == LINK_INFO_dbfrom)
757 link->dbfrom = (int) val.intvalue;
758 else if (type == LINK_INFO_dbto)
759 link->dbto = (int) val.intvalue;
760 else if (type == LINK_INFO_reciprocal)
761 link->reciprocal = (int) val.intvalue;
762 else if (type == LINK_INFO_datasize)
763 link->datasize = (int) val.intvalue;
764 else
765 AsnKillValue(type,&val);
766 }
767 AsnReadVal(stream,type,NULL); /* END STRUCT */
768 return link;
769 }
770
771 static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
772 {
773 ASSERT(link != NULL);
774 ASSERT(stream != NULL);
775
776 if (AsnStartStruct(stream,type))
777 {
778 Boolean retval = TRUE;
779 Integer_AsnWrite(link->id,stream,LINK_INFO_id,retval);
780 String_AsnWrite(link->tag,stream,LINK_INFO_tag,retval);
781 String_AsnWrite(link->name,stream,LINK_INFO_name,retval);
782 String_AsnWrite(link->descr,stream,LINK_INFO_descr,retval);
783 Integer_AsnWrite(link->dbfrom,stream,LINK_INFO_dbfrom,retval);
784 Integer_AsnWrite(link->dbto,stream,LINK_INFO_dbto,retval);
785 Integer_AsnWrite(link->datasize,stream,LINK_INFO_datasize,retval);
786 Integer_AsnWrite(link->reciprocal,stream,LINK_INFO_reciprocal,retval);
787 if (AsnEndStruct(stream,type))
788 return retval;
789 }
790 return FALSE;
791 }
792
793
794 /* ========== EntrezDivInfo ========== */
795
796 static EntrezDivInfo* EntrezDivInfo_Construct (EntrezDivInfo *div, int type_ct)
797 {
798 if (div != NULL)
799 {
800 memset((void*)div,0,sizeof(EntrezDivInfo));
801 div->docs = (long*) MemNew(sizeof(long) * (size_t)type_ct);
802 }
803 return div;
804 }
805
806 static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
807 {
808 if (div != NULL)
809 {
810 MemFree((void*)div->docs);
811 div->docs = NULL;
812 }
813 return div;
814 }
815
816 static EntrezDivInfo* EntrezDivInfo_AsnRead (EntrezDivInfo *div, AsnIo *ain, AsnType *type_start)
817 {
818 if (div == NULL)
819 div = (EntrezDivInfo*) MemNew(sizeof(EntrezDivInfo));
820 if (div != NULL)
821 {
822 DataVal val;
823 AsnType *atp = type_start;
824 int i;
825 while ((atp = AsnReadId(ain,amp,atp)) != type_start)
826 {
827 AsnReadVal(ain,atp,&val);
828
829 if (atp == DIV_INFO_tag)
830 {
831 /* memcpy((void*)div->tag,val.ptrvalue,3); */
832 Nlm_StringNCpy_0 (div->tag, val.ptrvalue, sizeof (div->tag));
833 div->tag[3] = '\0';
834 }
835 else if (atp == DIV_INFO_descr)
836 {
837 const char *str = (char*) val.ptrvalue;
838 div->descr = (str && *str) ? StrSave(str) : NULL;
839 }
840 else if (atp == DIV_INFO_reldate)
841 {
842 const char *str = (char*) val.ptrvalue;
843 div->reldate = (str && *str) ? StrSave(str) : NULL;
844 }
845 else if (atp == DIV_INFO_date)
846 {
847 CdDate_AsnRead(&div->date,ain,atp);
848 }
849 else if (atp == DIV_INFO_docs)
850 {
851 ASSERT(div->docs != NULL);
852 i = 0;
853 }
854 else if (atp == DIV_INFO_docs_E)
855 {
856 div->docs[i++] = val.intvalue;
857 }
858 else
859 {
860 AsnKillValue(atp,&val);
861 }
862 }
863 AsnReadVal(ain,atp,NULL); /* END STRUCT */
864 }
865 return div;
866 }
867
868 static Boolean EntrezDivInfo_AsnWrite (const EntrezDivInfo *div, AsnIo *stream, AsnType *type)
869 {
870 ASSERT(div != NULL);
871 ASSERT(stream != NULL);
872
873 if (AsnStartStruct(stream,type))
874 {
875 Boolean retval = TRUE;
876 String_AsnWrite(div->tag,stream,DIV_INFO_tag,retval);
877 String_AsnWrite(div->descr,stream,DIV_INFO_descr,retval);
878 String_AsnWrite(div->reldate,stream,DIV_INFO_reldate,retval);
879 CdDate_AsnWrite(&(div->date),stream,DIV_INFO_date);
880 if (div->docs != NULL)
881 {
882 int i;
883 AsnStartStruct(stream,DIV_INFO_docs);
884 for (i=0; i<_type_ct; ++i)
885 Integer_AsnWrite(div->docs[i],stream,DIV_INFO_docs_E,retval);
886 AsnEndStruct(stream,DIV_INFO_docs);
887 }
888 if (AsnEndStruct(stream,type))
889 return TRUE;
890 }
891 return FALSE;
892 }
893
894
895 /* ========== CdDate ========== */
896
897 static CdDate * CdDate_AsnRead (CdDate *date, AsnIo *stream, AsnType *type_start)
898 {
899 AsnType *type = type_start;
900 DataVal val;
901 while ((type = AsnReadId(stream,amp,type)) != type_start)
902 {
903 AsnReadVal(stream,type,&val);
904 if (type == CD_DATE_year)
905 date->year = (unsigned) val.intvalue;
906 else if (type == CD_DATE_month)
907 date->month = (unsigned) val.intvalue;
908 else if (type == CD_DATE_day)
909 date->day = (unsigned) val.intvalue;
910 else
911 AsnKillValue(type,&val);
912 }
913 AsnReadVal(stream,type,NULL); /* END STRUCT */
914 return date;
915 }
916
917 static Boolean CdDate_AsnWrite (const CdDate *date, AsnIo *stream, AsnType *type)
918 {
919 ASSERT(date != NULL);
920 ASSERT(stream != NULL);
921
922 if (AsnStartStruct(stream,type))
923 {
924 Boolean retval = TRUE;
925 Integer_AsnWrite(date->year,stream,CD_DATE_year,retval);
926 Integer_AsnWrite(date->month,stream,CD_DATE_month,retval);
927 Integer_AsnWrite(date->day,stream,CD_DATE_day,retval);
928 if (AsnEndStruct(stream,type))
929 return retval;
930 }
931 return FALSE;
932 }
933
934
935
936 /**************************************************
937 *
938 * DocSumNew()
939 *
940 **************************************************/
941
942 NLM_EXTERN DocSumPtr LIBCALL DocSumNew(void)
943 {
944 DocSumPtr ptr = MemNew((size_t) sizeof(DocSum));
945
946 ptr -> no_abstract = 0;
947 ptr -> translated_title = 0;
948 ptr -> no_authors = 0;
949 ptr -> non_document = 0;
950 ptr -> is_segmented = 0;
951 ptr -> is_partial = 0;
952 ptr->entrezDate = 0;
953 ptr->pStatus = ptr->pLanguage = ptr->pPubType = NULL;
954 return ptr;
955
956 }
957
958
959 /**************************************************
960 *
961 * DocSumAsnRead()
962 *
963 **************************************************/
964
965 NLM_EXTERN DocSumPtr LIBCALL DocSumAsnRead(AsnIoPtr aip, AsnTypePtr orig)
966 {
967 DataVal av;
968 AsnTypePtr atp;
969 Boolean isError = FALSE;
970 AsnReadFunc func;
971 DocSumPtr ptr;
972
973 if (aip == NULL) {
974 return NULL;
975 }
976
977 if (orig == NULL) { /* DocSum ::= (self contained) */
978 atp = AsnReadId(aip, amp, DOCSUM);
979 } else {
980 atp = AsnLinkType(orig, DOCSUM);
981 }
982 /* link in local tree */
983 if (atp == NULL) {
984 return NULL;
985 }
986
987 ptr = DocSumNew();
988 if (ptr == NULL) {
989 goto erret;
990 }
991 if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
992 goto erret;
993 }
994
995 atp = AsnReadId(aip,amp, atp);
996 func = NULL;
997
998 if (atp == DOCSUM_no_abstract) {
999 if ( AsnReadVal(aip, atp, &av) <= 0) {
1000 goto erret;
1001 }
1002 ptr -> no_abstract = av.boolvalue;
1003 atp = AsnReadId(aip,amp, atp);
1004 }
1005 if (atp == DOCSUM_translated_title) {
1006 if ( AsnReadVal(aip, atp, &av) <= 0) {
1007 goto erret;
1008 }
1009 ptr -> translated_title = av.boolvalue;
1010 atp = AsnReadId(aip,amp, atp);
1011 }
1012 if (atp == DOCSUM_no_authors) {
1013 if ( AsnReadVal(aip, atp, &av) <= 0) {
1014 goto erret;
1015 }
1016 ptr -> no_authors = av.boolvalue;
1017 atp = AsnReadId(aip,amp, atp);
1018 }
1019 if (atp == DOCSUM_caption) {
1020 if ( AsnReadVal(aip, atp, &av) <= 0) {
1021 goto erret;
1022 }
1023 ptr -> caption = av.ptrvalue;
1024 atp = AsnReadId(aip,amp, atp);
1025 }
1026 if (atp == DOCSUM_title) {
1027 if ( AsnReadVal(aip, atp, &av) <= 0) {
1028 goto erret;
1029 }
1030 ptr -> title = av.ptrvalue;
1031 atp = AsnReadId(aip,amp, atp);
1032 }
1033 if (atp == DOCSUM_extra) {
1034 if ( AsnReadVal(aip, atp, &av) <= 0) {
1035 goto erret;
1036 }
1037 ptr -> extra = av.ptrvalue;
1038 atp = AsnReadId(aip,amp, atp);
1039 }
1040 if (atp == DOCSUM_non_document) {
1041 if ( AsnReadVal(aip, atp, &av) <= 0) {
1042 goto erret;
1043 }
1044 ptr -> non_document = av.boolvalue;
1045 atp = AsnReadId(aip,amp, atp);
1046 }
1047 if (atp == DOCSUM_is_segmented) {
1048 if ( AsnReadVal(aip, atp, &av) <= 0) {
1049 goto erret;
1050 }
1051 ptr -> is_segmented = av.boolvalue;
1052 atp = AsnReadId(aip,amp, atp);
1053 }
1054 if (atp == DOCSUM_is_partial) {
1055 if ( AsnReadVal(aip, atp, &av) <= 0) {
1056 goto erret;
1057 }
1058 ptr -> is_partial = av.boolvalue;
1059 atp = AsnReadId(aip,amp, atp);
1060 }
1061 if (atp == DOCSUM_create) {
1062 if ( AsnReadVal(aip, atp, &av) <= 0) {
1063 goto erret;
1064 }
1065 CdDate_AsnRead(&ptr->create, aip, atp);
1066 if (aip -> io_failure) {
1067 goto erret;
1068 }
1069 atp = AsnReadId(aip,amp, atp);
1070 }
1071 if (atp == DOCSUM_modify) {
1072 if ( AsnReadVal(aip, atp, &av) <= 0) {
1073 goto erret;
1074 }
1075 CdDate_AsnRead(&ptr->modify, aip, atp);
1076 if (aip -> io_failure) {
1077 goto erret;
1078 }
1079 atp = AsnReadId(aip,amp, atp);
1080 }
1081 if (atp == DOCSUM_link_count) {
1082 Int2 index = 0;
1083
1084 AsnReadVal(aip, atp, &av);
1085 while ((atp = AsnReadId(aip, amp, atp)) == DOCSUM_link_count_E)
1086 {
1087 AsnReadVal(aip, atp, &av);
1088 ptr -> link_count[index++] = (short) av.intvalue;
1089 }
1090 AsnReadVal(aip, atp, &av);
1091 atp = AsnReadId(aip,amp, atp);
1092 }
1093 if (atp == DOCSUM_uid) {
1094 if ( AsnReadVal(aip, atp, &av) <= 0) {
1095 goto erret;
1096 }
1097 ptr -> uid = av.intvalue;
1098 atp = AsnReadId(aip,amp, atp);
1099 }
1100 if (atp == DOCSUM_not_yet_neighbored) {
1101 if ( AsnReadVal(aip, atp, &av) <= 0) {
1102 goto erret;
1103 }
1104 ptr -> not_yet_neighbored = av.boolvalue;
1105 atp = AsnReadId(aip,amp, atp);
1106 }
1107
1108 if (AsnReadVal(aip, atp, &av) <= 0) {
1109 goto erret;
1110 }
1111 /* end struct */
1112
1113 ret:
1114 AsnUnlinkType(orig); /* unlink local tree */
1115 return ptr;
1116
1117 erret:
1118 aip -> io_failure = TRUE;
1119 ptr = DocSumFree(ptr);
1120 goto ret;
1121 }
1122
1123
1124
1125 /**************************************************
1126 *
1127 * DocSumAsnWrite()
1128 *
1129 **************************************************/
1130 NLM_EXTERN Boolean LIBCALL DocSumAsnWrite(DocSumPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
1131 {
1132 DataVal av;
1133 AsnTypePtr atp;
1134 Boolean retval = FALSE;
1135 Int2 index;
1136
1137 if (aip == NULL) {
1138 return FALSE;
1139 }
1140
1141 atp = AsnLinkType(orig, DOCSUM); /* link local tree */
1142 if (atp == NULL) {
1143 return FALSE;
1144 }
1145
1146 if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
1147 if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
1148 goto erret;
1149 }
1150
1151 av.boolvalue = ptr -> no_abstract;
1152 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_no_abstract, &av);
1153 av.boolvalue = ptr -> translated_title;
1154 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_translated_title, &av);
1155 av.boolvalue = ptr -> no_authors;
1156 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_no_authors, &av);
1157 if (ptr -> caption != NULL) {
1158 av.ptrvalue = ptr -> caption;
1159 retval = AsnWrite(aip, DOCSUM_caption, &av);
1160 }
1161 if (ptr -> title != NULL) {
1162 av.ptrvalue = ptr -> title;
1163 retval = AsnWrite(aip, DOCSUM_title, &av);
1164 }
1165 if (ptr -> extra != NULL) {
1166 av.ptrvalue = ptr -> extra;
1167 retval = AsnWrite(aip, DOCSUM_extra, &av);
1168 }
1169 av.boolvalue = ptr -> non_document;
1170 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_non_document, &av);
1171 av.boolvalue = ptr -> is_segmented;
1172 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_is_segmented, &av);
1173 av.boolvalue = ptr -> is_partial;
1174 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_is_partial, &av);
1175 if ( ! CdDate_AsnWrite(&ptr -> create, aip, DOCSUM_create)) {
1176 goto erret;
1177 }
1178 if ( ! CdDate_AsnWrite(&ptr -> modify, aip, DOCSUM_modify)) {
1179 goto erret;
1180 }
1181
1182 for (index = 0; index < DocType_MAX; index++)
1183 {
1184 if (ptr->link_count[index] != 0)
1185 {
1186 break;
1187 }
1188 }
1189
1190 if (index < DocType_MAX)
1191 { /* some non-zero links */
1192 AsnStartStruct(aip, DOCSUM_link_count);
1193 for (index = 0; index < DocType_MAX; index++)
1194 {
1195 av.intvalue = ptr->link_count[index];
1196 AsnWrite(aip, DOCSUM_link_count_E, &av);
1197 }
1198 AsnEndStruct(aip, DOCSUM_link_count);
1199 }
1200
1201 av.intvalue = ptr -> uid;
1202 if (av.intvalue != 0) retval = AsnWrite(aip, DOCSUM_uid, &av);
1203
1204 av.boolvalue = ptr -> not_yet_neighbored;
1205 if (av.boolvalue) retval = AsnWrite(aip, DOCSUM_not_yet_neighbored, &av);
1206
1207 if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
1208 goto erret;
1209 }
1210 retval = TRUE;
1211
1212 erret:
1213 AsnUnlinkType(orig); /* unlink local tree */
1214 return retval;
1215 }
1216
1217
1218 /*****************************************************************************
1219 *
1220 * DocSumFree(dsp)
1221 *
1222 *****************************************************************************/
1223 NLM_EXTERN DocSumPtr LIBCALL DocSumFree (DocSumPtr dsp)
1224 {
1225 if (dsp == NULL)
1226 return NULL;
1227 MemFree(dsp->caption);
1228 MemFree(dsp->title);
1229 MemFree(dsp->extra);
1230 MemFree(dsp->pStatus);
1231 MemFree(dsp->pLanguage);
1232 MemFree(dsp->pPubType);
1233 return ((DocSumPtr) MemFree(dsp));
1234 }
1235
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