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NCBI C Toolkit Cross ReferenceC/asnstat/blstspc.h |
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1 /***********************************************************************
2 *
3 **
4 * Automatic header module from ASNTOOL
5 *
6 ************************************************************************/
7
8 #ifndef _ASNTOOL_
9 #include <asn.h>
10 #endif
11
12 static char * asnfilename = "blstspc.h23";
13 static AsnValxNode avnx[20] = {
14 {20,"blastn" ,0,0.0,&avnx[1] } ,
15 {20,"blastp" ,1,0.0,&avnx[2] } ,
16 {20,"blastx" ,2,0.0,&avnx[3] } ,
17 {20,"tblastn" ,3,0.0,&avnx[4] } ,
18 {20,"tblastx" ,4,0.0,NULL } ,
19 {20,"unknown" ,0,0.0,&avnx[6] } ,
20 {20,"protein" ,1,0.0,&avnx[7] } ,
21 {20,"nucleotide" ,2,0.0,NULL } ,
22 {20,"none" ,0,0.0,&avnx[9] } ,
23 {20,"info" ,1,0.0,&avnx[10] } ,
24 {20,"warn" ,2,0.0,&avnx[11] } ,
25 {20,"error" ,3,0.0,&avnx[12] } ,
26 {20,"fatal" ,4,0.0,NULL } ,
27 {20,"notset" ,0,0.0,&avnx[14] } ,
28 {20,"plus1" ,1,0.0,&avnx[15] } ,
29 {20,"plus2" ,2,0.0,&avnx[16] } ,
30 {20,"plus3" ,3,0.0,&avnx[17] } ,
31 {20,"minus1" ,4,0.0,&avnx[18] } ,
32 {20,"minus2" ,5,0.0,&avnx[19] } ,
33 {20,"minus3" ,6,0.0,NULL } };
34
35 static AsnType atx[187] = {
36 {401, "Blast-search" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[1],0,&atx[86]} ,
37 {0, "program" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[0],0,&atx[3]} ,
38 {310, "ENUMERATED" ,0,10,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
39 {0, "query" ,128,1,0,0,0,0,0,0,NULL,&atx[4],NULL,0,&atx[5]} ,
40 {411, "Bioseq" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[85]} ,
41 {0, "database" ,128,2,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[7]} ,
42 {323, "VisibleString" ,0,26,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
43 {0, "parameters" ,128,3,0,1,0,0,0,0,NULL,&atx[8],NULL,0,&atx[69]} ,
44 {404, "Blast-parameters" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[9],0,&atx[71]} ,
45 {0, "first-threshold" ,128,0,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[11]} ,
46 {302, "INTEGER" ,0,2,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
47 {0, "second-threshold" ,128,1,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[12]} ,
48 {0, "cutoff" ,128,2,0,1,0,0,0,0,NULL,&atx[16],&atx[13],0,&atx[17]} ,
49 {0, "evalue" ,128,0,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[15]} ,
50 {309, "REAL" ,0,9,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
51 {0, "score" ,128,1,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
52 {315, "CHOICE" ,0,-1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
53 {0, "cutoff2" ,128,3,0,1,0,0,0,0,NULL,&atx[16],&atx[18],0,&atx[20]} ,
54 {0, "evalue" ,128,0,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[19]} ,
55 {0, "score" ,128,1,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
56 {0, "hitlist-size" ,128,4,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[21]} ,
57 {0, "nucl-penalty" ,128,5,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[22]} ,
58 {0, "nucl-reward" ,128,6,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[23]} ,
59 {0, "genetic-code" ,128,7,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[24]} ,
60 {0, "db-genetic-code" ,128,8,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[25]} ,
61 {0, "low-complexity-filtering" ,128,9,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[26]} ,
62 {0, "gapped-alignment" ,128,10,0,0,0,0,0,0,NULL,&atx[27],NULL,0,&atx[28]} ,
63 {301, "BOOLEAN" ,0,1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
64 {0, "gap-open" ,128,11,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[29]} ,
65 {0, "gap-extend" ,128,12,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[30]} ,
66 {0, "required-start" ,128,13,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[31]} ,
67 {0, "required-end" ,128,14,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[32]} ,
68 {0, "ethresh" ,128,15,0,1,0,0,0,0,NULL,&atx[14],NULL,0,&atx[33]} ,
69 {0, "max-num-passes" ,128,16,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[34]} ,
70 {0, "pseudo-count-const" ,128,17,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[35]} ,
71 {0, "other-options" ,128,18,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[36]} ,
72 {0, "gilist" ,128,19,0,1,0,0,0,0,NULL,&atx[38],&atx[37],0,&atx[39]} ,
73 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
74 {312, "SEQUENCE OF" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
75 {0, "gifile" ,128,20,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[40]} ,
76 {0, "matrix" ,128,21,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[41]} ,
77 {0, "filter-string" ,128,22,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[42]} ,
78 {0, "entrez-query" ,128,23,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[43]} ,
79 {0, "word-size" ,128,24,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[44]} ,
80 {0, "db-length" ,128,25,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[45]} ,
81 {0, "searchsp-eff" ,128,26,0,1,0,0,0,0,NULL,&atx[14],NULL,0,&atx[46]} ,
82 {0, "hsp-range-max" ,128,27,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[47]} ,
83 {0, "block-width" ,128,28,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[48]} ,
84 {0, "perform-culling" ,128,29,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[49]} ,
85 {0, "strand-option" ,128,30,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[50]} ,
86 {0, "phi-pattern" ,128,31,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[51]} ,
87 {0, "use-real-db-size" ,128,32,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[52]} ,
88 {0, "use-best-align" ,128,33,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[53]} ,
89 {0, "is-rps-blast" ,128,34,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[54]} ,
90 {0, "tweak-parameters" ,128,35,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[55]} ,
91 {0, "smith-waterman" ,128,36,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[56]} ,
92 {0, "is-megablast" ,128,37,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[57]} ,
93 {0, "query-lcase-mask" ,128,38,0,1,0,0,0,0,NULL,&atx[38],&atx[58],0,&atx[60]} ,
94 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[59],NULL,0,NULL} ,
95 {414, "Seq-loc" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[171]} ,
96 {0, "is-ooframe" ,128,39,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[61]} ,
97 {0, "endpoint-results" ,128,40,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[62]} ,
98 {0, "percent-identity" ,128,41,0,1,0,0,0,0,NULL,&atx[14],NULL,0,&atx[63]} ,
99 {0, "first-db-seq" ,128,42,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[64]} ,
100 {0, "final-db-seq" ,128,43,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[65]} ,
101 {0, "window-size" ,128,44,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[66]} ,
102 {0, "mb-template-length" ,128,45,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[67]} ,
103 {0, "mb-disc-type" ,128,46,0,1,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
104 {311, "SEQUENCE" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
105 {0, "mask" ,128,4,0,1,0,0,0,0,NULL,&atx[59],NULL,0,&atx[70]} ,
106 {0, "matrix" ,128,5,0,1,0,0,0,0,NULL,&atx[71],NULL,0,&atx[83]} ,
107 {405, "Blast-matrix" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[72],0,&atx[126]} ,
108 {0, "is-protein" ,128,0,0,0,0,0,0,0,NULL,&atx[27],NULL,0,&atx[73]} ,
109 {0, "name" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[74]} ,
110 {0, "comments" ,128,2,0,1,0,0,0,0,NULL,&atx[38],&atx[75],0,&atx[76]} ,
111 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} ,
112 {0, "row-length" ,128,3,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[77]} ,
113 {0, "column-length" ,128,4,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[78]} ,
114 {0, "scores" ,128,5,0,0,0,0,0,0,NULL,&atx[38],&atx[79],0,&atx[80]} ,
115 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
116 {0, "karlinK" ,128,6,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[81]} ,
117 {0, "posFreqs" ,128,7,0,1,0,0,0,0,NULL,&atx[38],&atx[82],0,NULL} ,
118 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[14],NULL,0,NULL} ,
119 {0, "return-parts" ,128,6,0,1,0,0,0,0,NULL,&atx[27],NULL,0,&atx[84]} ,
120 {0, "query-set" ,128,7,0,1,0,0,0,0,NULL,&atx[85],NULL,0,NULL} ,
121 {412, "Bioseq-set" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[102]} ,
122 {402, "Blast-request" ,1,0,0,0,0,1,0,0,NULL,&atx[16],&atx[87],0,&atx[106]} ,
123 {0, "init" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[88]} ,
124 {0, "motd" ,128,1,0,0,0,0,0,0,NULL,&atx[89],NULL,0,&atx[90]} ,
125 {305, "NULL" ,0,5,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
126 {0, "db-info" ,128,2,0,0,0,0,0,0,NULL,&atx[89],NULL,0,&atx[91]} ,
127 {0, "db-info-specific" ,128,3,0,0,0,0,0,0,NULL,&atx[92],NULL,0,&atx[95]} ,
128 {417, "Blast-dbinfo-get" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[93],0,&atx[98]} ,
129 {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[94]} ,
130 {0, "type" ,128,1,0,0,0,0,0,0,NULL,&atx[2],&avnx[5],0,NULL} ,
131 {0, "matrix-get" ,128,4,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[96]} ,
132 {0, "search" ,128,5,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[97]} ,
133 {0, "db-seq-get" ,128,6,0,0,0,0,0,0,NULL,&atx[98],NULL,0,&atx[103]} ,
134 {418, "Blast-seq-id" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[99],0,&atx[169]} ,
135 {0, "is-protein" ,128,0,0,0,0,0,0,0,NULL,&atx[27],NULL,0,&atx[100]} ,
136 {0, "database" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[101]} ,
137 {0, "id" ,128,2,0,0,0,0,0,0,NULL,&atx[102],NULL,0,NULL} ,
138 {413, "Seq-id" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[59]} ,
139 {0, "db-redundant-ids-get" ,128,7,0,0,0,0,0,0,NULL,&atx[98],NULL,0,&atx[104]} ,
140 {0, "db-redundant-descr-get" ,128,8,0,0,0,0,0,0,NULL,&atx[98],NULL,0,&atx[105]} ,
141 {0, "fini" ,128,9,0,0,0,0,0,0,NULL,&atx[89],NULL,0,NULL} ,
142 {403, "Blast-response" ,1,0,0,0,0,1,0,0,NULL,&atx[16],&atx[107],0,&atx[8]} ,
143 {0, "init" ,128,0,0,0,0,0,0,0,NULL,&atx[108],NULL,0,&atx[111]} ,
144 {424, "Blast-version" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[109],0,&atx[179]} ,
145 {0, "version" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[110]} ,
146 {0, "date" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} ,
147 {0, "motd" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[112]} ,
148 {0, "error" ,128,2,0,0,0,0,0,0,NULL,&atx[113],NULL,0,&atx[116]} ,
149 {409, "Blast-error" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[114],0,&atx[159]} ,
150 {0, "level" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[8],0,&atx[115]} ,
151 {0, "msg" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,NULL} ,
152 {0, "db-seq-get" ,128,3,0,0,0,0,0,0,NULL,&atx[4],NULL,0,&atx[117]} ,
153 {0, "db-redundant-ids-get" ,128,4,0,0,0,0,0,0,NULL,&atx[38],&atx[118],0,&atx[119]} ,
154 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[102],NULL,0,NULL} ,
155 {0, "db-redundant-descr-get" ,128,5,0,0,0,0,0,0,NULL,&atx[38],&atx[120],0,&atx[124]} ,
156 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[121],NULL,0,NULL} ,
157 {423, "Blast-defline" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[122],0,&atx[108]} ,
158 {0, "id" ,128,0,0,0,0,0,0,0,NULL,&atx[102],NULL,0,&atx[123]} ,
159 {0, "defline" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} ,
160 {0, "db-info" ,128,6,0,0,0,0,0,0,NULL,&atx[38],&atx[125],0,&atx[133]} ,
161 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[126],NULL,0,NULL} ,
162 {406, "Blast-dbinfo" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[127],0,&atx[138]} ,
163 {0, "is-protein" ,128,0,0,0,0,0,0,0,NULL,&atx[27],NULL,0,&atx[128]} ,
164 {0, "name" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[129]} ,
165 {0, "definition" ,128,2,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[130]} ,
166 {0, "date" ,128,3,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[131]} ,
167 {0, "total-length" ,128,4,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[132]} ,
168 {0, "number-seqs" ,128,5,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
169 {0, "db-info-specific" ,128,7,0,0,0,0,0,0,NULL,&atx[126],NULL,0,&atx[134]} ,
170 {0, "matrix" ,128,8,0,0,0,0,0,0,NULL,&atx[71],NULL,0,&atx[135]} ,
171 {0, "alignment" ,128,9,0,0,0,0,0,0,NULL,&atx[136],NULL,0,&atx[137]} ,
172 {416, "Seq-align-set" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[92]} ,
173 {0, "mask" ,128,10,0,0,0,0,0,0,NULL,&atx[138],NULL,0,&atx[142]} ,
174 {407, "Blast-mask" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[139],0,&atx[143]} ,
175 {0, "location" ,128,0,0,0,0,0,0,0,NULL,&atx[38],&atx[140],0,&atx[141]} ,
176 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[59],NULL,0,NULL} ,
177 {0, "frame" ,128,1,0,0,0,0,0,0,NULL,&atx[2],&avnx[13],0,NULL} ,
178 {0, "kablk" ,128,11,0,0,0,0,0,0,NULL,&atx[143],NULL,0,&atx[148]} ,
179 {408, "Blast-KABlk" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[144],0,&atx[113]} ,
180 {0, "lambda" ,128,0,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[145]} ,
181 {0, "k" ,128,1,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[146]} ,
182 {0, "h" ,128,2,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[147]} ,
183 {0, "gapped" ,128,3,0,0,0,0,0,0,NULL,&atx[27],NULL,0,NULL} ,
184 {0, "parameters" ,128,12,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[149]} ,
185 {0, "queued" ,128,13,0,0,0,0,0,0,NULL,&atx[150],NULL,0,&atx[152]} ,
186 {421, "Blast-Queued" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[151],0,&atx[153]} ,
187 {0, "length" ,128,0,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
188 {0, "start" ,128,14,0,0,0,0,0,0,NULL,&atx[153],NULL,0,&atx[155]} ,
189 {422, "Blast-Progress" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[154],0,&atx[121]} ,
190 {0, "completed" ,128,0,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
191 {0, "progress" ,128,15,0,0,0,0,0,0,NULL,&atx[153],NULL,0,&atx[156]} ,
192 {0, "done" ,128,16,0,0,0,0,0,0,NULL,&atx[153],NULL,0,&atx[157]} ,
193 {0, "fini" ,128,17,0,0,0,0,0,0,NULL,&atx[89],NULL,0,&atx[158]} ,
194 {0, "phialign" ,128,18,0,0,0,0,0,0,NULL,&atx[159],NULL,0,&atx[163]} ,
195 {410, "Blast-phialign" ,1,0,0,0,0,1,0,0,NULL,&atx[68],&atx[160],0,&atx[4]} ,
196 {0, "numaligns" ,128,0,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[161]} ,
197 {0, "seqloc" ,128,1,0,0,0,0,0,0,NULL,&atx[38],&atx[162],0,NULL} ,
198 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[59],NULL,0,NULL} ,
199 {0, "parts" ,128,19,0,0,0,0,0,0,NULL,&atx[38],&atx[164],0,&atx[175]} ,
200 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[165],NULL,0,NULL} ,
201 {420, "Blast-parts" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[166],0,&atx[150]} ,
202 {0, "defline" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[167]} ,
203 {0, "sequence" ,128,1,0,0,0,0,0,0,NULL,&atx[174],&atx[168],0,NULL} ,
204 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[169],NULL,0,NULL} ,
205 {419, "Blast-sequence" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[170],0,&atx[165]} ,
206 {0, "align" ,128,0,0,0,0,0,0,0,NULL,&atx[171],NULL,0,&atx[172]} ,
207 {415, "Seq-align" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[136]} ,
208 {0, "db-seq" ,128,1,0,0,0,0,0,0,NULL,&atx[173],NULL,0,NULL} ,
209 {304, "OCTET STRING" ,0,4,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
210 {314, "SET OF" ,0,17,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
211 {0, "mbalign" ,128,20,0,0,0,0,0,0,NULL,&atx[176],NULL,0,NULL} ,
212 {426, "MegaBlast-results" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[177],0,NULL} ,
213 {0, "mbhits" ,128,0,0,0,0,0,0,0,NULL,&atx[38],&atx[178],0,NULL} ,
214 {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[179],NULL,0,NULL} ,
215 {425, "MegaBlast-hit" ,1,0,0,0,0,0,0,0,NULL,&atx[68],&atx[180],0,&atx[176]} ,
216 {0, "id1" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[181]} ,
217 {0, "id2" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[182]} ,
218 {0, "query-offset" ,128,2,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[183]} ,
219 {0, "subject-offset" ,128,3,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[184]} ,
220 {0, "query-end" ,128,4,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[185]} ,
221 {0, "subject-end" ,128,5,0,0,0,0,0,0,NULL,&atx[10],NULL,0,&atx[186]} ,
222 {0, "score" ,128,6,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} };
223
224 static AsnModule ampx[1] = {
225 { "NCBI-Blast" , "blstspc.h23",&atx[0],NULL,NULL,0,0} };
226
227 static AsnValxNodePtr avn = avnx;
228 static AsnTypePtr at = atx;
229 static AsnModulePtr amp = ampx;
230
231
232
233 /**************************************************
234 *
235 * Defines for Module NCBI-Blast
236 *
237 **************************************************/
238
239 #define BLAST_SEARCH &at[0]
240 #define BLAST_SEARCH_program &at[1]
241 #define BLAST_SEARCH_query &at[3]
242 #define BLAST_SEARCH_database &at[5]
243 #define BLAST_SEARCH_parameters &at[7]
244 #define BLAST_SEARCH_mask &at[69]
245 #define BLAST_SEARCH_matrix &at[70]
246 #define BLAST_SEARCH_return_parts &at[83]
247 #define BLAST_SEARCH_query_set &at[84]
248
249 #define BLAST_REQUEST &at[86]
250 #define BLAST_REQUEST_init &at[87]
251 #define BLAST_REQUEST_motd &at[88]
252 #define BLAST_REQUEST_db_info &at[90]
253 #define BLAST_REQUEST_db_info_specific &at[91]
254 #define BLAST_REQUEST_matrix_get &at[95]
255 #define BLAST_REQUEST_search &at[96]
256 #define BLAST_REQUEST_db_seq_get &at[97]
257 #define BLAST_REQUEST_db_redundant_ids_get &at[103]
258 #define BLAST_REQUEST_db_redundant_descr_get &at[104]
259 #define BLAST_REQUEST_fini &at[105]
260
261 #define BLAST_RESPONSE &at[106]
262 #define BLAST_RESPONSE_init &at[107]
263 #define BLAST_RESPONSE_motd &at[111]
264 #define BLAST_RESPONSE_error &at[112]
265 #define BLAST_RESPONSE_db_seq_get &at[116]
266 #define BLAST_RESPONSE_db_redundant_ids_get &at[117]
267 #define BLAST_RESPONSE_db_redundant_ids_get_E &at[118]
268 #define BLAST_RESPONSE_db_redundant_descr_get &at[119]
269 #define BLAST_RESPONSE_db_redundant_descr_get_E &at[120]
270 #define BLAST_RESPONSE_db_info &at[124]
271 #define BLAST_RESPONSE_db_info_E &at[125]
272 #define BLAST_RESPONSE_db_info_specific &at[133]
273 #define BLAST_RESPONSE_matrix &at[134]
274 #define BLAST_RESPONSE_alignment &at[135]
275 #define BLAST_RESPONSE_mask &at[137]
276 #define BLAST_RESPONSE_kablk &at[142]
277 #define BLAST_RESPONSE_parameters &at[148]
278 #define BLAST_RESPONSE_queued &at[149]
279 #define BLAST_RESPONSE_start &at[152]
280 #define BLAST_RESPONSE_progress &at[155]
281 #define BLAST_RESPONSE_done &at[156]
282 #define BLAST_RESPONSE_fini &at[157]
283 #define BLAST_RESPONSE_phialign &at[158]
284 #define BLAST_RESPONSE_parts &at[163]
285 #define BLAST_RESPONSE_parts_E &at[164]
286 #define BLAST_RESPONSE_mbalign &at[175]
287
288 #define BLAST_PARAMETERS &at[8]
289 #define BLAST_PARAMETERS_first_threshold &at[9]
290 #define BLAST_PARAMETERS_second_threshold &at[11]
291 #define BLAST_PARAMETERS_cutoff &at[12]
292 #define BLAST_PARAMETERS_cutoff_evalue &at[13]
293 #define BLAST_PARAMETERS_cutoff_score &at[15]
294 #define BLAST_PARAMETERS_cutoff2 &at[17]
295 #define BLAST_PARAMETERS_cutoff2_evalue &at[18]
296 #define BLAST_PARAMETERS_cutoff2_score &at[19]
297 #define BLAST_PARAMETERS_hitlist_size &at[20]
298 #define BLAST_PARAMETERS_nucl_penalty &at[21]
299 #define BLAST_PARAMETERS_nucl_reward &at[22]
300 #define BLAST_PARAMETERS_genetic_code &at[23]
301 #define BLAST_PARAMETERS_db_genetic_code &at[24]
302 #define BLAST_PARAMETERS_low_complexity_filtering &at[25]
303 #define BLAST_PARAMETERS_gapped_alignment &at[26]
304 #define BLAST_PARAMETERS_gap_open &at[28]
305 #define BLAST_PARAMETERS_gap_extend &at[29]
306 #define BLAST_PARAMETERS_required_start &at[30]
307 #define BLAST_PARAMETERS_required_end &at[31]
308 #define BLAST_PARAMETERS_ethresh &at[32]
309 #define BLAST_PARAMETERS_max_num_passes &at[33]
310 #define BLAST_PARAMETERS_pseudo_count_const &at[34]
311 #define BLAST_PARAMETERS_other_options &at[35]
312 #define BLAST_PARAMETERS_gilist &at[36]
313 #define BLAST_PARAMETERS_gilist_E &at[37]
314 #define BLAST_PARAMETERS_gifile &at[39]
315 #define BLAST_PARAMETERS_matrix &at[40]
316 #define BLAST_PARAMETERS_filter_string &at[41]
317 #define BLAST_PARAMETERS_entrez_query &at[42]
318 #define BLAST_PARAMETERS_word_size &at[43]
319 #define BLAST_PARAMETERS_db_length &at[44]
320 #define BLAST_PARAMETERS_searchsp_eff &at[45]
321 #define BLAST_PARAMETERS_hsp_range_max &at[46]
322 #define BLAST_PARAMETERS_block_width &at[47]
323 #define BLAST_PARAMETERS_perform_culling &at[48]
324 #define BLAST_PARAMETERS_strand_option &at[49]
325 #define BLAST_PARAMETERS_phi_pattern &at[50]
326 #define BLAST_PARAMETERS_use_real_db_size &at[51]
327 #define BLAST_PARAMETERS_use_best_align &at[52]
328 #define BLAST_PARAMETERS_is_rps_blast &at[53]
329 #define BLAST_PARAMETERS_tweak_parameters &at[54]
330 #define BLAST_PARAMETERS_smith_waterman &at[55]
331 #define BLAST_PARAMETERS_is_megablast &at[56]
332 #define BLAST_PARAMETERS_query_lcase_mask &at[57]
333 #define BLAST_PARAMETERS_query_lcase_mask_E &at[58]
334 #define BLAST_PARAMETERS_is_ooframe &at[60]
335 #define BLAST_PARAMETERS_endpoint_results &at[61]
336 #define BLAST_PARAMETERS_percent_identity &at[62]
337 #define BLAST_PARAMETERS_first_db_seq &at[63]
338 #define BLAST_PARAMETERS_final_db_seq &at[64]
339 #define BLAST_PARAMETERS_window_size &at[65]
340 #define BLAST_PARAMETERS_mb_template_length &at[66]
341 #define BLAST_PARAMETERS_mb_disc_type &at[67]
342
343 #define BLAST_MATRIX &at[71]
344 #define BLAST_MATRIX_is_protein &at[72]
345 #define BLAST_MATRIX_name &at[73]
346 #define BLAST_MATRIX_comments &at[74]
347 #define BLAST_MATRIX_comments_E &at[75]
348 #define BLAST_MATRIX_row_length &at[76]
349 #define BLAST_MATRIX_column_length &at[77]
350 #define BLAST_MATRIX_scores &at[78]
351 #define BLAST_MATRIX_scores_E &at[79]
352 #define BLAST_MATRIX_karlinK &at[80]
353 #define BLAST_MATRIX_posFreqs &at[81]
354 #define BLAST_MATRIX_posFreqs_E &at[82]
355
356 #define BLAST_DBINFO &at[126]
357 #define BLAST_DBINFO_is_protein &at[127]
358 #define BLAST_DBINFO_name &at[128]
359 #define BLAST_DBINFO_definition &at[129]
360 #define BLAST_DBINFO_date &at[130]
361 #define BLAST_DBINFO_total_length &at[131]
362 #define BLAST_DBINFO_number_seqs &at[132]
363
364 #define BLAST_MASK &at[138]
365 #define BLAST_MASK_location &at[139]
366 #define BLAST_MASK_location_E &at[140]
367 #define BLAST_MASK_frame &at[141]
368
369 #define BLAST_KABLK &at[143]
370 #define BLAST_KABLK_lambda &at[144]
371 #define BLAST_KABLK_k &at[145]
372 #define BLAST_KABLK_h &at[146]
373 #define BLAST_KABLK_gapped &at[147]
374
375 #define BLAST_ERROR &at[113]
376 #define BLAST_ERROR_level &at[114]
377 #define BLAST_ERROR_msg &at[115]
378
379 #define BLAST_PHIALIGN &at[159]
380 #define BLAST_PHIALIGN_numaligns &at[160]
381 #define BLAST_PHIALIGN_seqloc &at[161]
382 #define BLAST_PHIALIGN_seqloc_E &at[162]
383
384 #define BLAST_DBINFO_GET &at[92]
385 #define BLAST_DBINFO_GET_name &at[93]
386 #define BLAST_DBINFO_GET_type &at[94]
387
388 #define BLAST_SEQ_ID &at[98]
389 #define BLAST_SEQ_ID_is_protein &at[99]
390 #define BLAST_SEQ_ID_database &at[100]
391 #define BLAST_SEQ_ID_id &at[101]
392
393 #define BLAST_SEQUENCE &at[169]
394 #define BLAST_SEQUENCE_align &at[170]
395 #define BLAST_SEQUENCE_db_seq &at[172]
396
397 #define BLAST_PARTS &at[165]
398 #define BLAST_PARTS_defline &at[166]
399 #define BLAST_PARTS_sequence &at[167]
400 #define BLAST_PARTS_sequence_E &at[168]
401
402 #define BLAST_QUEUED &at[150]
403 #define BLAST_QUEUED_length &at[151]
404
405 #define BLAST_PROGRESS &at[153]
406 #define BLAST_PROGRESS_completed &at[154]
407
408 #define BLAST_DEFLINE &at[121]
409 #define BLAST_DEFLINE_id &at[122]
410 #define BLAST_DEFLINE_defline &at[123]
411
412 #define BLAST_VERSION &at[108]
413 #define BLAST_VERSION_version &at[109]
414 #define BLAST_VERSION_date &at[110]
415
416 #define MEGABLAST_HIT &at[179]
417 #define MEGABLAST_HIT_id1 &at[180]
418 #define MEGABLAST_HIT_id2 &at[181]
419 #define MEGABLAST_HIT_query_offset &at[182]
420 #define MEGABLAST_HIT_subject_offset &at[183]
421 #define MEGABLAST_HIT_query_end &at[184]
422 #define MEGABLAST_HIT_subject_end &at[185]
423 #define MEGABLAST_HIT_score &at[186]
424
425 #define MEGABLAST_RESULTS &at[176]
426 #define MEGABLAST_RESULTS_mbhits &at[177]
427 #define MEGABLAST_RESULTS_mbhits_E &at[178]
428 |
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