NCBI C Toolkit Cross Reference

C/asn/tinyseq.asn

  1 --$Revision: 6.1 $
  2 --**********************************************************************
  3 --
  4 --  ASN.1 for a tiny Bioseq in XML
  5 --    basically a structured FASTA file with a few extras
  6 --    in this case we drop all modularity of components
  7 --      All ids are Optional - simpler structure, less checking
  8 --      Components of organism are hard coded - can't easily add or change
  9 --      sequence is just string whether DNA or protein
 10 --  by James Ostell, 2000
 11 --
 12 --**********************************************************************
 13 
 14 NCBI-TSeq DEFINITIONS ::=
 15 BEGIN
 16 
 17 TSeq ::= SEQUENCE {
 18         seqtype ENUMERATED {
 19                 nucleotide (1),
 20                 protein (2) },
 21         gi INTEGER OPTIONAL,
 22         accver VisibleString OPTIONAL,
 23         sid VisibleString OPTIONAL,
 24         local VisibleString OPTIONAL,
 25         taxid INTEGER OPTIONAL,
 26         orgname VisibleString OPTIONAL,
 27         defline VisibleString,
 28         length INTEGER,
 29         sequence VisibleString }
 30 
 31 TSeqSet ::= SEQUENCE OF TSeq    -- a bunch of them
 32 
 33 END
 34

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