NCBI C Toolkit Cross Reference

C/asn/seqset.asn

  1 --$Revision: 6.5 $
  2 --**********************************************************************
  3 --
  4 --  NCBI Sequence Collections
  5 --  by James Ostell, 1990
  6 --
  7 --  Version 3.0 - 1994
  8 --
  9 --**********************************************************************
 10 
 11 NCBI-Seqset DEFINITIONS ::=
 12 BEGIN
 13 
 14 EXPORTS Bioseq-set, Seq-entry;
 15 
 16 IMPORTS Bioseq, Seq-annot, Seq-descr FROM NCBI-Sequence
 17         Object-id, Dbtag, Date FROM NCBI-General;
 18 
 19 --*** Sequence Collections ********************************
 20 --*
 21 
 22 Bioseq-set ::= SEQUENCE {      -- just a collection
 23     id Object-id OPTIONAL ,
 24     coll Dbtag OPTIONAL ,          -- to identify a collection
 25     level INTEGER OPTIONAL ,       -- nesting level
 26     class ENUMERATED {
 27         not-set (0) ,
 28         nuc-prot (1) ,              -- nuc acid and coded proteins
 29         segset (2) ,                -- segmented sequence + parts
 30         conset (3) ,                -- constructed sequence + parts
 31         parts (4) ,                 -- parts for 2 or 3
 32         gibb (5) ,                  -- geninfo backbone
 33         gi (6) ,                    -- geninfo
 34         genbank (7) ,               -- converted genbank
 35         pir (8) ,                   -- converted pir
 36         pub-set (9) ,               -- all the seqs from a single publication
 37         equiv (10) ,                -- a set of equivalent maps or seqs
 38         swissprot (11) ,            -- converted SWISSPROT
 39         pdb-entry (12) ,            -- a complete PDB entry
 40         mut-set (13) ,              -- set of mutations
 41         pop-set (14) ,              -- population study
 42         phy-set (15) ,              -- phylogenetic study
 43         eco-set (16) ,              -- ecological sample study
 44         gen-prod-set (17) ,         -- genomic products, chrom+mRNA+protein
 45         wgs-set (18) ,              -- whole genome shotgun project
 46         named-annot (19) ,          -- named annotation set
 47         named-annot-prod (20) ,     -- with instantiated mRNA+protein
 48         read-set (21) ,             -- set from a single read
 49         paired-end-reads (22) ,     -- paired sequences within a read-set
 50         other (255) } DEFAULT not-set ,
 51     release VisibleString OPTIONAL ,
 52     date Date OPTIONAL ,
 53     descr Seq-descr OPTIONAL ,
 54     seq-set SEQUENCE OF Seq-entry ,
 55     annot SET OF Seq-annot OPTIONAL }
 56 
 57 Seq-entry ::= CHOICE {
 58         seq Bioseq ,
 59         set Bioseq-set }
 60 
 61 END
 62
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