NCBI C Toolkit Cross Reference

C/asn/seqblock.asn

  1 --$Revision: 6.0 $
  2 --*********************************************************************
  3 --
  4 -- 1990 - J.Ostell
  5 -- Version 3.0 - June 1994
  6 --
  7 --*********************************************************************
  8 --*********************************************************************
  9 --
 10 --  EMBL specific data
 11 --  This block of specifications was developed by Reiner Fuchs of EMBL
 12 --  Updated by J.Ostell, 1994
 13 --
 14 --*********************************************************************
 15 
 16 EMBL-General DEFINITIONS ::=
 17 BEGIN
 18 
 19 EXPORTS EMBL-dbname, EMBL-xref, EMBL-block;
 20 
 21 IMPORTS Date, Object-id FROM NCBI-General;
 22 
 23 EMBL-dbname ::= CHOICE {
 24     code ENUMERATED {
 25         embl(0),
 26         genbank(1),
 27         ddbj(2),
 28         geninfo(3),
 29         medline(4),
 30         swissprot(5),
 31         pir(6),
 32         pdb(7),
 33         epd(8),
 34         ecd(9),
 35         tfd(10),
 36         flybase(11),
 37         prosite(12),
 38         enzyme(13),
 39         mim(14),
 40         ecoseq(15),
 41         hiv(16) ,
 42         other (255) } ,
 43     name    VisibleString }
 44 
 45 EMBL-xref ::= SEQUENCE {
 46     dbname EMBL-dbname,
 47     id SEQUENCE OF Object-id }
 48 
 49 EMBL-block ::= SEQUENCE {
 50     class ENUMERATED {
 51         not-set(0),
 52         standard(1),
 53         unannotated(2),
 54         other(255) } DEFAULT standard,
 55     div ENUMERATED {
 56         fun(0),
 57         inv(1),
 58         mam(2),
 59         org(3),
 60         phg(4),
 61         pln(5),
 62         pri(6),
 63         pro(7),
 64         rod(8),
 65         syn(9),
 66         una(10),
 67         vrl(11),
 68         vrt(12),
 69         pat(13),
 70         est(14),
 71         sts(15),
 72         other (255) } OPTIONAL,
 73     creation-date Date,
 74     update-date Date,
 75     extra-acc SEQUENCE OF VisibleString OPTIONAL,
 76     keywords SEQUENCE OF VisibleString OPTIONAL,
 77     xref SEQUENCE OF EMBL-xref OPTIONAL }
 78 
 79 END
 80 
 81 --*********************************************************************
 82 --
 83 --  SWISSPROT specific data
 84 --  This block of specifications was developed by Mark Cavanaugh of
 85 --      NCBI working with Amos Bairoch of SWISSPROT
 86 --
 87 --*********************************************************************
 88 
 89 SP-General DEFINITIONS ::=
 90 BEGIN
 91 
 92 EXPORTS SP-block;
 93 
 94 IMPORTS Date, Dbtag FROM NCBI-General
 95         Seq-id FROM NCBI-Seqloc;
 96 
 97 SP-block ::= SEQUENCE {         -- SWISSPROT specific descriptions
 98     class ENUMERATED {
 99         not-set (0) ,
100         standard (1) ,      -- conforms to all SWISSPROT checks
101         prelim (2) ,        -- only seq and biblio checked
102         other (255) } ,
103     extra-acc SET OF VisibleString OPTIONAL ,  -- old SWISSPROT ids
104     imeth BOOLEAN DEFAULT FALSE ,  -- seq known to start with Met
105     plasnm SET OF VisibleString OPTIONAL,  -- plasmid names carrying gene
106     seqref SET OF Seq-id OPTIONAL,         -- xref to other sequences
107     dbref SET OF Dbtag OPTIONAL ,          -- xref to non-sequence dbases
108     keywords SET OF VisibleString OPTIONAL , -- keywords
109     created Date OPTIONAL ,         -- creation date
110     sequpd Date OPTIONAL ,          -- sequence update
111     annotupd Date OPTIONAL }        -- annotation update
112 
113 END
114 
115 --*********************************************************************
116 --
117 --  PIR specific data
118 --  This block of specifications was developed by Jim Ostell of
119 --      NCBI
120 --
121 --*********************************************************************
122 
123 PIR-General DEFINITIONS ::=
124 BEGIN
125 
126 EXPORTS PIR-block;
127 
128 IMPORTS Seq-id FROM NCBI-Seqloc;
129 
130 PIR-block ::= SEQUENCE {          -- PIR specific descriptions
131     had-punct BOOLEAN OPTIONAL ,      -- had punctuation in sequence ?
132     host VisibleString OPTIONAL ,
133     source VisibleString OPTIONAL ,     -- source line
134     summary VisibleString OPTIONAL ,
135     genetic VisibleString OPTIONAL ,
136     includes VisibleString OPTIONAL ,
137     placement VisibleString OPTIONAL ,
138     superfamily VisibleString OPTIONAL ,
139     keywords SEQUENCE OF VisibleString OPTIONAL ,
140     cross-reference VisibleString OPTIONAL ,
141     date VisibleString OPTIONAL ,
142     seq-raw VisibleString OPTIONAL ,  -- seq with punctuation
143     seqref SET OF Seq-id OPTIONAL }         -- xref to other sequences
144 
145 END
146 
147 --*********************************************************************
148 --
149 --  GenBank specific data
150 --  This block of specifications was developed by Jim Ostell of
151 --      NCBI
152 --
153 --*********************************************************************
154 
155 GenBank-General DEFINITIONS ::=
156 BEGIN
157 
158 EXPORTS GB-block;
159 
160 IMPORTS Date FROM NCBI-General;
161 
162 GB-block ::= SEQUENCE {          -- GenBank specific descriptions
163     extra-accessions SEQUENCE OF VisibleString OPTIONAL ,
164     source VisibleString OPTIONAL ,     -- source line
165     keywords SEQUENCE OF VisibleString OPTIONAL ,
166     origin VisibleString OPTIONAL,
167     date VisibleString OPTIONAL ,       -- OBSOLETE old form Entry Date
168     entry-date Date OPTIONAL ,          -- replaces date
169     div VisibleString OPTIONAL ,        -- GenBank division
170     taxonomy VisibleString OPTIONAL }   -- continuation line of organism
171 
172 END
173 
174 --**********************************************************************
175 -- PRF specific definition
176 --    PRF is a protein sequence database crated and maintained by
177 --    Protein Research Foundation, Minoo-city, Osaka, Japan.
178 --
179 --    Written by A.Ogiwara, Inst.Chem.Res. (Dr.Kanehisa's Lab),
180 --            Kyoto Univ., Japan
181 --
182 --**********************************************************************
183 
184 PRF-General DEFINITIONS ::=
185 BEGIN
186 
187 EXPORTS PRF-block;
188 
189 PRF-block ::= SEQUENCE {
190       extra-src       PRF-ExtraSrc OPTIONAL,
191       keywords        SEQUENCE OF VisibleString OPTIONAL
192 }
193 
194 PRF-ExtraSrc ::= SEQUENCE {
195       host    VisibleString OPTIONAL,
196       part    VisibleString OPTIONAL,
197       state   VisibleString OPTIONAL,
198       strain  VisibleString OPTIONAL,
199       taxon   VisibleString OPTIONAL
200 }
201 
202 END
203 
204 --*********************************************************************
205 --
206 --  PDB specific data
207 --  This block of specifications was developed by Jim Ostell and
208 --      Steve Bryant of NCBI
209 --
210 --*********************************************************************
211 
212 PDB-General DEFINITIONS ::=
213 BEGIN
214 
215 EXPORTS PDB-block;
216 
217 IMPORTS Date FROM NCBI-General;
218 
219 PDB-block ::= SEQUENCE {          -- PDB specific descriptions
220     deposition Date ,         -- deposition date  month,year
221     class VisibleString ,
222     compound SEQUENCE OF VisibleString ,
223     source SEQUENCE OF VisibleString ,
224     exp-method VisibleString OPTIONAL ,  -- present if NOT X-ray diffraction
225     replace PDB-replace OPTIONAL } -- replacement history
226 
227 PDB-replace ::= SEQUENCE {
228     date Date ,
229     ids SEQUENCE OF VisibleString }   -- entry ids replace by this one
230 
231 END
232
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