NCBI C Toolkit Cross Reference

C/asn/medline.asn

  1 --$Revision: 6.0 $
  2 --**********************************************************************
  3 --
  4 --  MEDLINE data definitions
  5 --  James Ostell, 1990
  6 --
  7 --  enhanced in 1996 to support PubMed records as well by simply adding
  8 --    the PubMedId and making MedlineId optional
  9 --
 10 --**********************************************************************
 11 
 12 NCBI-Medline DEFINITIONS ::=
 13 BEGIN
 14 
 15 EXPORTS Medline-entry, Medline-si;
 16 
 17 IMPORTS Cit-art, PubMedId FROM NCBI-Biblio
 18         Date FROM NCBI-General;
 19 
 20                                 -- a MEDLINE or PubMed entry
 21 Medline-entry ::= SEQUENCE {
 22     uid INTEGER OPTIONAL ,      -- MEDLINE UID, sometimes not yet available if from PubMed
 23     em Date ,                   -- Entry Month
 24     cit Cit-art ,               -- article citation
 25     abstract VisibleString OPTIONAL ,
 26     mesh SET OF Medline-mesh OPTIONAL ,
 27     substance SET OF Medline-rn OPTIONAL ,
 28     xref SET OF Medline-si OPTIONAL ,
 29     idnum SET OF VisibleString OPTIONAL ,  -- ID Number (grants, contracts)
 30     gene SET OF VisibleString OPTIONAL ,
 31     pmid PubMedId OPTIONAL ,               -- MEDLINE records may include the PubMedId
 32     pub-type SET OF VisibleString OPTIONAL, -- may show publication types (review, etc)
 33     mlfield SET OF Medline-field OPTIONAL ,  -- additional Medline field types
 34     status INTEGER {
 35         publisher (1) ,      -- record as supplied by publisher
 36         premedline (2) ,     -- premedline record
 37         medline (3) } DEFAULT medline }  -- regular medline record
 38 
 39 Medline-mesh ::= SEQUENCE {
 40     mp BOOLEAN DEFAULT FALSE ,       -- TRUE if main point (*)
 41     term VisibleString ,                   -- the MeSH term
 42     qual SET OF Medline-qual OPTIONAL }    -- qualifiers
 43 
 44 Medline-qual ::= SEQUENCE {
 45     mp BOOLEAN DEFAULT FALSE ,       -- TRUE if main point
 46     subh VisibleString }             -- the subheading
 47 
 48 Medline-rn ::= SEQUENCE {       -- medline substance records
 49     type ENUMERATED {           -- type of record
 50         nameonly (0) ,
 51         cas (1) ,               -- CAS number
 52         ec (2) } ,              -- EC number
 53     cit VisibleString OPTIONAL ,  -- CAS or EC number if present
 54     name VisibleString }          -- name (always present)
 55 
 56 Medline-si ::= SEQUENCE {       -- medline cross reference records
 57     type ENUMERATED {           -- type of xref
 58         ddbj (1) ,              -- DNA Data Bank of Japan
 59         carbbank (2) ,          -- Carbohydrate Structure Database
 60         embl (3) ,              -- EMBL Data Library
 61         hdb (4) ,               -- Hybridoma Data Bank
 62         genbank (5) ,           -- GenBank
 63         hgml (6) ,              -- Human Gene Map Library
 64         mim (7) ,               -- Mendelian Inheritance in Man
 65         msd (8) ,               -- Microbial Strains Database
 66         pdb (9) ,               -- Protein Data Bank (Brookhaven)
 67         pir (10) ,              -- Protein Identification Resource
 68         prfseqdb (11) ,         -- Protein Research Foundation (Japan)
 69         psd (12) ,              -- Protein Sequence Database (Japan)
 70         swissprot (13) ,        -- SwissProt
 71         gdb (14) } ,            -- Genome Data Base
 72     cit VisibleString OPTIONAL }    -- the citation/accession number
 73 
 74 Medline-field ::= SEQUENCE {
 75     type INTEGER {              -- Keyed type
 76         other (0) ,             -- look in line code
 77         comment (1) ,           -- comment line
 78         erratum (2) } ,         -- retracted, corrected, etc
 79     str VisibleString ,         -- the text
 80     ids SEQUENCE OF DocRef OPTIONAL }  -- pointers relevant to this text
 81 
 82 DocRef ::= SEQUENCE {           -- reference to a document
 83     type INTEGER {
 84         medline (1) ,
 85         pubmed (2) ,
 86         ncbigi (3) } ,
 87     uid INTEGER }
 88 
 89 END
 90
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