NCBI C Toolkit Cross Reference

C/algo/blast/api/seqsrc_multiseq.h

  1 /*  $Id: seqsrc_multiseq.h,v 1.10 2006/11/21 17:22:15 papadopo Exp $
  2 * ===========================================================================
  3 *
  4 *                            PUBLIC DOMAIN NOTICE
  5 *               National Center for Biotechnology Information
  6 *
  7 *  This software/database is a "United States Government Work" under the
  8 *  terms of the United States Copyright Act.  It was written as part of
  9 *  the author's official duties as a United States Government employee and
 10 *  thus cannot be copyrighted.  This software/database is freely available
 11 *  to the public for use. The National Library of Medicine and the U.S.
 12 *  Government have not placed any restriction on its use or reproduction.
 13 *
 14 *  Although all reasonable efforts have been taken to ensure the accuracy
 15 *  and reliability of the software and data, the NLM and the U.S.
 16 *  Government do not and cannot warrant the performance or results that
 17 *  may be obtained by using this software or data. The NLM and the U.S.
 18 *  Government disclaim all warranties, express or implied, including
 19 *  warranties of performance, merchantability or fitness for any particular
 20 *  purpose.
 21 *
 22 *  Please cite the author in any work or product based on this material.
 23 *
 24 *  Author:  Ilya Dondoshansky
 25 * ===========================================================================*/
 26 
 27 /** @file seqsrc_multiseq.h
 28  * C Implementation of the BlastSeqSrc interface for a list of sequence 
 29  * locations.
 30  */
 31 
 32 #ifndef MULTISEQ_SRC_H
 33 #define MULTISEQ_SRC_H
 34 
 35 #include <algo/blast/core/blast_seqsrc.h>
 36 #include <algo/blast/core/blast_program.h>
 37 #include <algo/blast/core/blast_message.h>
 38 #include <objloc.h>
 39 
 40 #ifdef __cplusplus
 41 extern "C" {
 42 #endif
 43 
 44 /** @addtogroup CToolkitAlgoBlast
 45  *
 46  * @{
 47  */
 48 
 49 /** Initialize the sequence source structure.
 50  * @param seqloc_list Linked list of sequence locations [in]
 51  * @param program Type of BLAST to be performed [in]
 52  */
 53 BlastSeqSrc* 
 54 MultiSeqBlastSeqSrcInit(SeqLoc* seqloc_list, EBlastProgramType program);
 55 
 56 /* @} */
 57 
 58 #ifdef __cplusplus
 59 }
 60 #endif
 61 
 62 #endif /* MULTISEQ_SRC_H */
 63

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