NCBI C Toolkit Cross Reference

C/algo/blast/api/repeats_filter.h

  1 /* $Id: repeats_filter.h,v 1.5 2006/04/26 12:46:47 madden Exp $
  2 * ===========================================================================
  3 *
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  5 *               National Center for Biotechnology Information
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  9 *  the author's official duties as a United States Government employee and 
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 24 * ===========================================================================
 25 *
 26 * Author: Ilya Dondoshansky
 27 *
 28 */
 29 
 30 /** @file repeats_filter.h
 31 * Repeats filtering API for the C version of rewritten BLAST engine.
 32 */
 33 
 34 #ifndef _REPEATS_FILTER_ 
 35 #define _REPEATS_FILTER_ 
 36 
 37 #ifdef __cplusplus
 38 extern "C" {
 39 #endif
 40 
 41 #include <objloc.h>
 42 #include <algo/blast/api/blast_message_api.h>
 43 
 44 /** @addtogroup CToolkitAlgoBlast
 45  *
 46  * @{
 47  */
 48 
 49 /** Finds repeats filtering locations, given filter string option.
 50  * Does nothing if filter string does not contain a repeat option.
 51  * @param query_seqloc List of query locations [in]
 52  * @param filter_string Filtering option for a BLAST search, e.g. 
 53  *                      "m L;R -d rodents.lib" [in]
 54  * @param mask_loc List of repeat mask locations [out]
 55  * @param message Used to send back error messages [out]
 56  * @return Status.
 57  */
 58 Int2 Blast_FindRepeatFilterSeqLoc(SeqLoc* query_seqloc, 
 59                                   const char* filter_string, 
 60                                   SeqLoc* *mask_loc,
 61                                   SBlastMessage **message);
 62 
 63 /* @} */
 64 
 65 #ifdef __cplusplus
 66 }
 67 #endif
 68 
 69 #endif
 70
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