Log of /trunk/c++/src/app/read_blast_result/shortcuts.cpp

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Revision 91324 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Oct 9 14:48:11 2020 UTC (3 years, 6 months ago) by gouriano
File length: 14163 byte(s)
Diff to previous 69498

Replaced strstream with CNcbiStrstream. strstream is removed in C++17. JIRA: CXX-10934

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Revision 69498 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Oct 27 14:16:38 2015 UTC (8 years, 6 months ago) by badrazat
File length: 14153 byte(s)
Diff to previous 51736

add context to throws; JIRA: GBK-385

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Revision 51736 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Oct 27 11:39:15 2011 UTC (12 years, 6 months ago) by badrazat
File length: 13862 byte(s)
Diff to previous 49675

[10/26/2011]  Multi-platform C++ compilation warnings (total:2),  ATTN: Azat Badretdin

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Modified Mon May 16 18:30:03 2011 UTC (12 years, 11 months ago) by badrazat
File length: 13859 byte(s)
Diff to previous 46132

added check for dupe locus-tags, if have them, abort fatally

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Revision 46132 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 15 16:11:55 2010 UTC (13 years, 10 months ago) by badrazat
File length: 12975 byte(s)
Diff to previous 45877

JIRA PR-147

fixed calculation of the ends of the printed_range, added another
interface to it

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Modified Tue May 25 19:50:42 2010 UTC (13 years, 11 months ago) by badrazat
File length: 12688 byte(s)
Diff to previous 45569

getting read of warnings in reply to:

READ_BLAST -- No error checking/handling for I/O?
by Vakatov

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Revision 45569 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Apr 28 16:54:00 2010 UTC (14 years ago) by badrazat
File length: 12687 byte(s)
Diff to previous 45452

added working short proteins detection, but without handling fuzzy
proteins at the end of the contigs yet.

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Modified Thu Apr 15 10:41:47 2010 UTC (14 years ago) by badrazat
File length: 12599 byte(s)
Diff to previous 40507

update

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Revision 40507 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Dec 22 19:18:20 2008 UTC (15 years, 4 months ago) by badrazat
File length: 12195 byte(s)
Diff to previous 40348

fixed_warnings

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Revision 40348 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Dec 5 17:58:06 2008 UTC (15 years, 4 months ago) by badrazat
File length: 12192 byte(s)
Diff to previous 40271

added removal of proteins overlapping w/ rRNA

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Revision 40271 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Nov 28 17:00:31 2008 UTC (15 years, 5 months ago) by badrazat
File length: 11926 byte(s)
Diff to previous 39442

corrected RNA file naming

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Revision 39442 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 25 17:58:00 2008 UTC (15 years, 7 months ago) by badrazat
File length: 11924 byte(s)
Diff to previous 39317

added handling of overlaps that involve overtheorigin annotations
the log file is modified only for overlaps. The same thing could be
applied also for frameshift things later

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Revision 39317 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Sep 17 16:24:35 2008 UTC (15 years, 7 months ago) by badrazat
File length: 11171 byte(s)
Diff to previous 39254

more diagnostics for  overlaps

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Revision 39254 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 15 14:29:16 2008 UTC (15 years, 7 months ago) by badrazat
File length: 11401 byte(s)
Diff to previous 38349

added more printout in debug to facilitates calculations for Bill
(bill_9_12_2008)

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Revision 38349 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 24 20:05:20 2008 UTC (15 years, 10 months ago) by badrazat
File length: 11070 byte(s)
Diff to previous 36536

update

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Revision 36536 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Jan 10 20:44:13 2008 UTC (16 years, 3 months ago) by badrazat
File length: 10221 byte(s)
Diff to previous 36511

changes

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Added Wed Jan 9 19:33:47 2008 UTC (16 years, 3 months ago) by kazimird
File length: 10898 byte(s)

Imported the "specialty/frameshifts/read_blast_result" CVS module (into src/app/).