NCBI C++ Toolkit Cross Reference

C++/src/objects/medline/medline.dump

  1 M,12,medline.asn:NCBI-Medline
  2 --$Revision: 96973 $
  3 --**********************************************************************
  4 --
  5 --  MEDLINE data definitions
  6 --  James Ostell, 1990
  7 --
  8 --  enhanced in 1996 to support PubMed records as well by simply adding
  9 --    the PubMedId and making MedlineId optional
 10 --
 11 --**********************************************************************
 12   T,21,NCBI-Medline:Medline-entry
 13   T,39,NCBI-Medline:Medline-mesh
 14   T,44,NCBI-Medline:Medline-qual
 15   T,48,NCBI-Medline:Medline-rn
 16   T,56,NCBI-Medline:Medline-si
 17   T,74,NCBI-Medline:Medline-field
 18   T,82,NCBI-Medline:DocRef
 19 
 20 T,21,Medline-entry,SEQUENCE
 21 -- a MEDLINE or PubMed entry
 22 -- regular medline record
 23   F,22,Medline-entry:uid,INTEGER,OPTIONAL
 24   -- MEDLINE UID, sometimes not yet available if from PubMed
 25   F,23,Medline-entry:em,/Date
 26   -- Entry Month
 27   F,24,Medline-entry:cit,/Cit-art
 28   -- article citation
 29   F,25,Medline-entry:abstract,VisibleString,OPTIONAL
 30   F,26,Medline-entry:mesh,SET /Medline-mesh,OPTIONAL
 31   F,27,Medline-entry:substance,SET /Medline-rn,OPTIONAL
 32   F,28,Medline-entry:xref,SET /Medline-si,OPTIONAL
 33   F,29,Medline-entry:idnum,SET VisibleString,OPTIONAL
 34   -- ID Number (grants, contracts)
 35   F,30,Medline-entry:gene,SET VisibleString,OPTIONAL
 36   F,31,Medline-entry:pmid,/PubMedId,OPTIONAL
 37   -- MEDLINE records may include the PubMedId
 38   F,32,Medline-entry:pub-type,SET VisibleString,OPTIONAL
 39   -- may show publication types (review, etc)
 40   F,33,Medline-entry:mlfield,SET /Medline-field,OPTIONAL
 41   -- additional Medline field types
 42   F,34,Medline-entry:status,INTEGER,DEFAULT,medline
 43     V,35,Medline-entry:status:publisher,1
 44     -- record as supplied by publisher
 45     V,36,Medline-entry:status:premedline,2
 46     -- premedline record
 47     V,37,Medline-entry:status:medline,3
 48 
 49 T,39,Medline-mesh,SEQUENCE
 50   F,40,Medline-mesh:mp,BOOLEAN,DEFAULT,FALSE
 51   -- TRUE if main point (*)
 52   F,41,Medline-mesh:term,VisibleString
 53   -- the MeSH term
 54   F,42,Medline-mesh:qual,SET /Medline-qual,OPTIONAL
 55   -- qualifiers
 56 
 57 T,44,Medline-qual,SEQUENCE
 58   F,45,Medline-qual:mp,BOOLEAN,DEFAULT,FALSE
 59   -- TRUE if main point
 60   F,46,Medline-qual:subh,VisibleString
 61   -- the subheading
 62 
 63 T,48,Medline-rn,SEQUENCE
 64 -- medline substance records
 65   F,49,Medline-rn:type,ENUMERATED
 66   -- type of record
 67     V,50,Medline-rn:type:nameonly,0
 68     V,51,Medline-rn:type:cas,1
 69     -- CAS number
 70     V,52,Medline-rn:type:ec,2
 71     -- EC number
 72   F,53,Medline-rn:cit,VisibleString,OPTIONAL
 73   -- CAS or EC number if present
 74   F,54,Medline-rn:name,VisibleString
 75   -- name (always present)
 76 
 77 T,56,Medline-si,SEQUENCE
 78 -- medline cross reference records
 79   F,57,Medline-si:type,ENUMERATED
 80   -- type of xref
 81     V,58,Medline-si:type:ddbj,1
 82     -- DNA Data Bank of Japan
 83     V,59,Medline-si:type:carbbank,2
 84     -- Carbohydrate Structure Database
 85     V,60,Medline-si:type:embl,3
 86     -- EMBL Data Library
 87     V,61,Medline-si:type:hdb,4
 88     -- Hybridoma Data Bank
 89     V,62,Medline-si:type:genbank,5
 90     -- GenBank
 91     V,63,Medline-si:type:hgml,6
 92     -- Human Gene Map Library
 93     V,64,Medline-si:type:mim,7
 94     -- Mendelian Inheritance in Man
 95     V,65,Medline-si:type:msd,8
 96     -- Microbial Strains Database
 97     V,66,Medline-si:type:pdb,9
 98     -- Protein Data Bank (Brookhaven)
 99     V,67,Medline-si:type:pir,10
100     -- Protein Identification Resource
101     V,68,Medline-si:type:prfseqdb,11
102     -- Protein Research Foundation (Japan)
103     V,69,Medline-si:type:psd,12
104     -- Protein Sequence Database (Japan)
105     V,70,Medline-si:type:swissprot,13
106     -- SwissProt
107     V,71,Medline-si:type:gdb,14
108     -- Genome Data Base
109   F,72,Medline-si:cit,VisibleString,OPTIONAL
110   -- the citation/accession number
111 
112 T,74,Medline-field,SEQUENCE
113   F,75,Medline-field:type,INTEGER
114   -- Keyed type
115     V,76,Medline-field:type:other,0
116     -- look in line code
117     V,77,Medline-field:type:comment,1
118     -- comment line
119     V,78,Medline-field:type:erratum,2
120     -- retracted, corrected, etc
121   F,79,Medline-field:str,VisibleString
122   -- the text
123   F,80,Medline-field:ids,SEQUENCE /DocRef,OPTIONAL
124   -- pointers relevant to this text
125 
126 T,82,DocRef,SEQUENCE
127 -- reference to a document
128   F,83,DocRef:type,INTEGER
129     V,84,DocRef:type:medline,1
130     V,85,DocRef:type:pubmed,2
131     V,86,DocRef:type:ncbigi,3
132   F,87,DocRef:uid,INTEGER
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