NCBI C++ Toolkit Cross Reference

  C++/include/objtools/format/items/accession_item.hpp


#ifndef OBJTOOLS_FORMAT_ITEMS___ACCESSION_ITEM__HPP #define OBJTOOLS_FORMAT_ITEMS___ACCESSION_ITEM__HPP /* $Id: accession_item.hpp 53807 2012-04-19 13:43:48Z kornbluh $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Author: Aaron Ucko, NCBI * Mati Shomrat * * File Description: * Accession item for flat-file generator * * */ #include <corelib/ncbistd.hpp> #include <util/range.hpp> #include <list> #include <objtools/format/items/item_base.hpp> BEGIN_NCBI_SCOPE BEGIN_SCOPE(objects) class CSeq_loc; class CBioseqContext; class IFormatter; /////////////////////////////////////////////////////////////////////////// // // Accession class NCBI_FORMAT_EXPORT CAccessionItem : public CFlatItem { public: // typedef typedef vector<string> TExtra_accessions; CAccessionItem(CBioseqContext& ctx); void Format(IFormatter& formatter, IFlatTextOStream& text_os) const; const string& GetAccession(void) const; const string& GetWGSAccession(void) const; const string& GetTSAAccession(void) const; const TExtra_accessions& GetExtraAccessions(void) const; bool IsSetRegion(void) const; const CSeq_loc& GetRegion(void) const; private: void x_GatherInfo(CBioseqContext& ctx); // data string m_Accession; string m_WGSAccession; string m_TSAAccession; TExtra_accessions m_ExtraAccessions; CConstRef<CSeq_loc> m_Region; bool m_IsSetRegion; }; ///////////////////////////////////////////////////////////////////////////// // inline methods inline const string& CAccessionItem::GetAccession(void) const { return m_Accession; } inline const string& CAccessionItem::GetWGSAccession(void) const { return m_WGSAccession; } inline const string& CAccessionItem::GetTSAAccession(void) const { return m_TSAAccession; } inline const CAccessionItem::TExtra_accessions& CAccessionItem::GetExtraAccessions(void) const { return m_ExtraAccessions; } inline bool CAccessionItem::IsSetRegion(void) const { return m_IsSetRegion; } inline const CSeq_loc& CAccessionItem::GetRegion(void) const { _ASSERT(m_Region); return *m_Region; } END_SCOPE(objects) END_NCBI_SCOPE #endif /* OBJTOOLS_FORMAT_ITEMS___ACCESSION_ITEM__HPP */

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