NCBI C++ Toolkit Cross Reference

  C++/include/gui/widgets/seq_graphic/coord_mapper.hpp


#ifndef GUI_WIDGETS_SEQ_GRAPHIC___COORDINATE_MAPPER__HPP #define GUI_WIDGETS_SEQ_GRAPHIC___COORDINATE_MAPPER__HPP /* $Id: coord_mapper.hpp 19073 2009-04-03 13:44:29Z wuliangs $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Authors: Vlad Lebedev, Liangshou Wu * * File Description: * */ #include <gui/gui.hpp> #include <objmgr/seq_loc_mapper.hpp> BEGIN_NCBI_SCOPE /////////////////////////////////////////////////////////////////////////////// /// ICoordMapper interface for converting location between two coordinate /// systems. /// class NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT ICoordMapper { public: virtual ~ICoordMapper() {}; /// Converting source location to destination location. /// The relation between src coord. and destination coords. is defined /// by users. virtual CRef<objects::CSeq_loc> Map(const objects::CSeq_loc& src_loc) = 0; }; /////////////////////////////////////////////////////////////////////////////// /// CCoordMapper_SeqLocMapper coordinate mapper based on CSeq_Loc_Mapper. /// class NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT CCoordMapper_SeqLocMapper : public CObject , public ICoordMapper { public: CCoordMapper_SeqLocMapper(const objects::CSeq_align& map_align, const objects::CSeq_id& to_id, objects::CScope* scope) : m_Mapper(map_align, to_id, scope) {} CCoordMapper_SeqLocMapper(const objects::CSeq_loc& source, const objects::CSeq_loc& target, objects::CScope* scope) : m_Mapper(source, target, scope) {} virtual CRef<objects::CSeq_loc> Map(const objects::CSeq_loc& src_loc) { CRef<objects::CSeq_loc> loc = m_Mapper.Map(src_loc); return loc; } private: objects::CSeq_loc_Mapper m_Mapper; }; END_NCBI_SCOPE #endif // GUI_WIDGETS_SEQ_GRAPHIC___COORDINATE_MAPPER__HPP

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