NCBI C++ Toolkit Cross Reference

  C++/include/gui/packages/pkg_snp/hapmap/hapmap_ds.hpp


#ifndef GUI_PACKAGES_SNP_HAPMAP__HAPMAP_DS__HPP #define GUI_PACKAGES_SNP_HAPMAP__HAPMAP_DS__HPP /* $Id: hapmap_ds.hpp 25703 2012-04-24 19:57:50Z wuliangs $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Authors: Melvin Quintos * * File Description: * This file contains class declarations for CSGHapmapDS and CSGHapmapDSType * */ #include <corelib/ncbimtx.hpp> #include <objmgr/bioseq_handle.hpp> #include <objmgr/scope.hpp> #include <objmgr/seq_vector.hpp> #include <util/rangemap.hpp> #include <util/range_coll.hpp> #include <gui/gui_export.h> #include <gui/widgets/wx/ui_tool_registry.hpp> #include <gui/utils/attr_range_coll.hpp> #include <gui/utils/event_translator.hpp> #include <gui/utils/extension.hpp> #include <gui/widgets/seq_graphic/seqgraphic_job.hpp> #include <gui/widgets/seq_graphic/seqgraphic_job_result.hpp> #include <gui/widgets/seq_graphic/seqgraphic_data_source.hpp> #include <gui/widgets/seq_graphic/seqgraphic_genbank_ds.hpp> #include <gui/widgets/seq_graphic/layout_track.hpp> BEGIN_NCBI_SCOPE /////////////////////////////////////////////////////////////////////////////// // CSGHapmapDS /////////////////////////////////////////////////////////////////////////////// class CSGHapmapDS : public CSGGenBankDS { public: static void GetTrackNames(SConstScopedObject& object, TAnnotNameTitleMap& names, const TSeqRange& range, const ILayoutTrackFactory::SExtraParams& params); public: CSGHapmapDS(objects::CScope& scope, const objects::CSeq_id& id); void SetName(const string&); void LoadData(const TSeqRange& range, TModelUnit scale, bool preferFeats, bool isOverview); private: string m_Name; }; /////////////////////////////////////////////////////////////////////////////// // CSGHapmapDSType /////////////////////////////////////////////////////////////////////////////// class NCBI_GUIWIDGETS_SNP_EXPORT CSGHapmapDSType : public CObject, public ISGDataSourceType, public IExtension { public: /// @name IExtension interface implementation /// @{ virtual ISGDataSource* CreateDS(SConstScopedObject& object) const; virtual bool IsSharable() const; /// @} /// @name IExtension interface implementation /// @{ virtual string GetExtensionIdentifier() const; virtual string GetExtensionLabel() const; /// @} }; /////////////////////////////////////////////////////////////////////////////// /// SHapmapJobResult /////////////////////////////////////////////////////////////////////////////// struct SHapmapJobResult : public CObject { enum EDataType { eHistFromGraphs, eHistFromFeats, eFeats }; EDataType eDataType; CSeqGlyph::TObjects listObjs; }; END_NCBI_SCOPE #endif // GUI_PACKAGES_SNP_HAPMAP__HAPMAP_DS__HPP

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