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Definitions for CBl2Seq

Type	Member of	File	Line
class		/include/algo/blast/api/bl2seq.hpp	57
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	62
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	67
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	72
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	76
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	82
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	87
function prototype or declaration	CBl2Seq	/include/algo/blast/api/bl2seq.hpp	193
function definition	CBl2Seq	/src/algo/blast/api/bl2seq.cpp	48
function definition	CBl2Seq	/src/algo/blast/api/bl2seq.cpp	77
function definition	CBl2Seq	/src/algo/blast/api/bl2seq.cpp	90
function definition	CBl2Seq	/src/algo/blast/api/bl2seq.cpp	101
function definition	CBl2Seq	/src/algo/blast/api/bl2seq.cpp	112
function definition	CBl2Seq	/src/algo/blast/api/bl2seq.cpp	120

14 declarations in 2 files.

References to CBl2Seq

File	Line
/include/algo/align/splign/splign_simple.hpp	66 67 86
/include/algo/blast/api/bl2seq.hpp	57 62 67 72 76 82 87 193 193 195 195 222 230 236 244 250 258 264 272 278 285 290 296 302 311
/include/algo/blast/api/blast_options.hpp	561
/include/algo/blast/api/local_blast.hpp	151
/src/algo/align/contig_assembly/contig_assembly.cpp	152
/src/algo/align/splign/splign_simple.cpp	70 92 97
/src/algo/blast/api/bl2seq.cpp	48 48 60 77 77 90 90 101 101 112 112 120 120 128 135 141 153 173 177 182 186 196 216 222
/src/algo/blast/igblast/igblast.cpp	1732
/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp	125 166 255 425 586 633 672 699 729 768 793 846 875 940 1000 1016 1034 1052 1070 1084 1134 1134 1139 1167 1195 1222 1249 1278 1292 1308 1353 1413 1465 1504 1523 1632 1647 1674 1682 1695 1746 1804 1824 1863 1884 1898 1910 1923 1934 1955 1991 2015 2043 2063 2078 2097 2112 2140 2169 2187 2203 2223 2248 2273 2297 2355 2414 2480 2504 2538 2563 2723 2746 2769 2792 2815 2839 2862 2885 2908 2927 2945 2989 3039 3264 3287 3320 3354 3516 3544 3586 3606
/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp	210 358
/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp	340 509 597
/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp	443
/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp	654
/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp	238
/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp	208
/src/algo/blast/unit_tests/api/traceback_unit_test.cpp	221 356 489 616 859 962
/src/algo/cobalt/blast.cpp	208 406
/src/app/splign/splign_app.cpp	865
/src/gui/packages/pkg_alignment/blast_seq_tool_job.cpp	553
/src/gui/packages/pkg_alignment/prosplign_tool.cpp	465
/src/gui/packages/pkg_alignment/splign_tool.cpp	340
/src/gui/packages/pkg_sequence_edit/create_seq_hist_for_tpa.cpp	407
/src/gui/packages/pkg_sequence_edit/far_pointer_seq.cpp	463
/src/gui/packages/pkg_sequence_edit/mixedstrands.cpp	275 280
/src/gui/packages/pkg_sequence_edit/sequpd.cpp	592
/src/sample/app/blast/blast_sample.cpp	144

178 references in 26 files.