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Definitions for SetFrom

Type Member of File Line
function prototype or declaration CGnomon_param_Base::C_Gc_content_range /include/algo/gnomon/Gnomon_param_.hpp 117
function prototype or declaration CGnomon_param_Base::C_Gc_content_range /include/algo/gnomon/Gnomon_param_.hpp 118
function definition CGnomon_param_Base::C_Gc_content_range /include/algo/gnomon/Gnomon_param_.hpp 376
function definition CGnomon_param_Base::C_Gc_content_range /include/algo/gnomon/Gnomon_param_.hpp 383
function prototype or declaration /include/algo/gnomon/gnomon_model.hpp 207
function prototype or declaration /include/algo/gnomon/gnomon_model.hpp 805
function definition CWiggleExportParams /include/gui/packages/pkg_sequence/wiggle_export_params.hpp 90
function definition CAttrRangeCollection /include/gui/utils/attr_range_coll.hpp 122
function prototype or declaration /include/gui/widgets/seq_graphic/alngraphic_ds.hpp 203
function prototype or declaration CCit_art_Base /include/objects/biblio/Cit_art_.hpp 223
function prototype or declaration CCit_art_Base /include/objects/biblio/Cit_art_.hpp 224
function definition CCit_art_Base /include/objects/biblio/Cit_art_.hpp 374
function prototype or declaration CRange_Base /include/objects/blastxml2/Range_.hpp 99
function prototype or declaration CRange_Base /include/objects/blastxml2/Range_.hpp 100
function definition CRange_Base /include/objects/blastxml2/Range_.hpp 166
function definition CRange_Base /include/objects/blastxml2/Range_.hpp 173
function prototype or declaration CCn3d_residue_range_Base /include/objects/cn3d/Cn3d_residue_range_.hpp 97
function prototype or declaration CCn3d_residue_range_Base /include/objects/cn3d/Cn3d_residue_range_.hpp 98
function definition CCn3d_residue_range_Base /include/objects/cn3d/Cn3d_residue_range_.hpp 163
function definition CCn3d_residue_range_Base /include/objects/cn3d/Cn3d_residue_range_.hpp 170
function prototype or declaration CGBInterval_Base /include/objects/gbseq/GBInterval_.hpp 103
function prototype or declaration CGBInterval_Base /include/objects/gbseq/GBInterval_.hpp 104
function definition CGBInterval_Base /include/objects/gbseq/GBInterval_.hpp 218
function definition CGBInterval_Base /include/objects/gbseq/GBInterval_.hpp 225
function prototype or declaration CINSDInterval_Base /include/objects/insdseq/INSDInterval_.hpp 119
function prototype or declaration CINSDInterval_Base /include/objects/insdseq/INSDInterval_.hpp 120
function definition CINSDInterval_Base /include/objects/insdseq/INSDInterval_.hpp 234
function definition CINSDInterval_Base /include/objects/insdseq/INSDInterval_.hpp 241
function prototype or declaration CDBLink_field_pair_Base /include/objects/macro/DBLink_field_pair_.hpp 95
function prototype or declaration CDBLink_field_pair_Base /include/objects/macro/DBLink_field_pair_.hpp 96
function definition CDBLink_field_pair_Base /include/objects/macro/DBLink_field_pair_.hpp 161
function definition CDBLink_field_pair_Base /include/objects/macro/DBLink_field_pair_.hpp 168
function prototype or declaration CLocation_interval_Base /include/objects/macro/Location_interval_.hpp 91
function prototype or declaration CLocation_interval_Base /include/objects/macro/Location_interval_.hpp 92
function definition CLocation_interval_Base /include/objects/macro/Location_interval_.hpp 157
function definition CLocation_interval_Base /include/objects/macro/Location_interval_.hpp 164
function prototype or declaration CMolinfo_completedness_pair_Base /include/objects/macro/Molinfo_completedness_pair_.hpp 95
function prototype or declaration CMolinfo_completedness_pair_Base /include/objects/macro/Molinfo_completedness_pair_.hpp 96
function definition CMolinfo_completedness_pair_Base /include/objects/macro/Molinfo_completedness_pair_.hpp 161
function definition CMolinfo_completedness_pair_Base /include/objects/macro/Molinfo_completedness_pair_.hpp 168
function prototype or declaration CMolinfo_mol_class_pair_Base /include/objects/macro/Molinfo_mol_class_pair_.hpp 95
function prototype or declaration CMolinfo_mol_class_pair_Base /include/objects/macro/Molinfo_mol_class_pair_.hpp 96
function definition CMolinfo_mol_class_pair_Base /include/objects/macro/Molinfo_mol_class_pair_.hpp 161
function definition CMolinfo_mol_class_pair_Base /include/objects/macro/Molinfo_mol_class_pair_.hpp 168
function prototype or declaration CMolinfo_molecule_pair_Base /include/objects/macro/Molinfo_molecule_pair_.hpp 95
function prototype or declaration CMolinfo_molecule_pair_Base /include/objects/macro/Molinfo_molecule_pair_.hpp 96
function definition CMolinfo_molecule_pair_Base /include/objects/macro/Molinfo_molecule_pair_.hpp 161
function definition CMolinfo_molecule_pair_Base /include/objects/macro/Molinfo_molecule_pair_.hpp 168
function prototype or declaration CMolinfo_strand_pair_Base /include/objects/macro/Molinfo_strand_pair_.hpp 95
function prototype or declaration CMolinfo_strand_pair_Base /include/objects/macro/Molinfo_strand_pair_.hpp 96
function definition CMolinfo_strand_pair_Base /include/objects/macro/Molinfo_strand_pair_.hpp 161
function definition CMolinfo_strand_pair_Base /include/objects/macro/Molinfo_strand_pair_.hpp 168
function prototype or declaration CMolinfo_technique_pair_Base /include/objects/macro/Molinfo_technique_pair_.hpp 95
function prototype or declaration CMolinfo_technique_pair_Base /include/objects/macro/Molinfo_technique_pair_.hpp 96
function definition CMolinfo_technique_pair_Base /include/objects/macro/Molinfo_technique_pair_.hpp 161
function definition CMolinfo_technique_pair_Base /include/objects/macro/Molinfo_technique_pair_.hpp 168
function prototype or declaration CMolinfo_topology_pair_Base /include/objects/macro/Molinfo_topology_pair_.hpp 95
function prototype or declaration CMolinfo_topology_pair_Base /include/objects/macro/Molinfo_topology_pair_.hpp 96
function definition CMolinfo_topology_pair_Base /include/objects/macro/Molinfo_topology_pair_.hpp 161
function definition CMolinfo_topology_pair_Base /include/objects/macro/Molinfo_topology_pair_.hpp 168
function prototype or declaration CStructured_comment_field_pair_Base /include/objects/macro/Structu_comment_field_pair_.hpp 95
function prototype or declaration CStructured_comment_field_pair_Base /include/objects/macro/Structu_comment_field_pair_.hpp 96
function definition CStructured_comment_field_pair_Base /include/objects/macro/Structu_comment_field_pair_.hpp 154
function prototype or declaration CMim_page_Base /include/objects/mim/Mim_page_.hpp 95
function prototype or declaration CMim_page_Base /include/objects/mim/Mim_page_.hpp 96
function prototype or declaration CMim_page_Base /include/objects/mim/Mim_page_.hpp 97
function definition CMim_page_Base /include/objects/mim/Mim_page_.hpp 156
function definition CMim_page_Base /include/objects/mim/Mim_page_.hpp 163
function definition CMim_page_Base /include/objects/mim/Mim_page_.hpp 170
function prototype or declaration CResidue_interval_pntr_Base /include/objects/mmdb3/Residue_interval_pntr_.hpp 109
function prototype or declaration CResidue_interval_pntr_Base /include/objects/mmdb3/Residue_interval_pntr_.hpp 110
function definition CResidue_interval_pntr_Base /include/objects/mmdb3/Residue_interval_pntr_.hpp 218
function definition CResidue_interval_pntr_Base /include/objects/mmdb3/Residue_interval_pntr_.hpp 225
function prototype or declaration CPC_Group_Base::C_Bonds /include/objects/pcsubstance/PC_Group_.hpp 314
function definition CPC_Group_Base::C_Bonds /include/objects/pcsubstance/PC_Group_.hpp 741
function prototype or declaration CSeq_map_table_Base /include/objects/seqcode/Seq_map_table_.hpp 104
function prototype or declaration CSeq_map_table_Base /include/objects/seqcode/Seq_map_table_.hpp 105
function definition CSeq_map_table_Base /include/objects/seqcode/Seq_map_table_.hpp 210
function definition CSeq_map_table_Base /include/objects/seqcode/Seq_map_table_.hpp 217
function prototype or declaration CSeq_interval_Base /include/objects/seqloc/Seq_interval_.hpp 108
function prototype or declaration CSeq_interval_Base /include/objects/seqloc/Seq_interval_.hpp 109
function definition CSeq_interval_Base /include/objects/seqloc/Seq_interval_.hpp 223
function definition CSeq_interval_Base /include/objects/seqloc/Seq_interval_.hpp 230
function prototype or declaration CSeq_loc_I /include/objects/seqloc/Seq_loc.hpp 721
function prototype or declaration CPlacement_Base /include/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp 137
function prototype or declaration CPlacement_Base /include/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp 138
function definition CPlacement_Base /include/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp 328
function definition CPlacement_Base /include/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp 335
function prototype or declaration CTranslation_Base /include/objtools/eutils/esearch/Translation_.hpp 94
function prototype or declaration CTranslation_Base /include/objtools/eutils/esearch/Translation_.hpp 95
function prototype or declaration CTranslation_Base /include/objtools/eutils/esearch/Translation_.hpp 96
function definition CTranslation_Base /include/objtools/eutils/esearch/Translation_.hpp 156
function definition CTranslation_Base /include/objtools/eutils/esearch/Translation_.hpp 163
function definition CTranslation_Base /include/objtools/eutils/esearch/Translation_.hpp 170
function definition CBamFileRangeSet /include/sra/readers/bam/bamindex.hpp 948
function definition CBamFileRangeSet /include/sra/readers/bam/bamindex.hpp 954
function prototype or declaration /include/util/range_coll.hpp 315
function prototype or declaration /include/util/range_coll.hpp 363
function prototype or declaration /include/util/range_coll.hpp 371
function prototype or declaration /src/algo/align/mergetree/equiv_range.cpp 781
function prototype or declaration /src/algo/align/mergetree/equiv_range.cpp 784
function prototype or declaration /src/algo/align/mergetree/equiv_range.cpp 963
function prototype or declaration /src/algo/align/mergetree/equiv_range.cpp 1008
function prototype or declaration /src/algo/align/ngalign/alignment_scorer.cpp 298
function prototype or declaration /src/algo/align/ngalign/banded_aligner.cpp 517
function prototype or declaration /src/algo/align/ngalign/banded_aligner.cpp 518
function prototype or declaration /src/algo/align/ngalign/banded_aligner.cpp 535
function prototype or declaration /src/algo/align/ngalign/banded_aligner.cpp 536
function prototype or declaration /src/algo/align/ngalign/inversion_merge_aligner.cpp 323
function prototype or declaration /src/algo/align/ngalign/result_set.cpp 449
function prototype or declaration /src/algo/align/ngalign/result_set.cpp 451
function prototype or declaration /src/algo/align/ngalign/result_set.cpp 456
function prototype or declaration /src/algo/align/ngalign/result_set.cpp 458
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 250
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 288
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 334
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 377
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 391
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 426
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 439
function prototype or declaration /src/algo/align/ngalign/unordered_spliter.cpp 611
function prototype or declaration /src/algo/align/prosplign/Info.cpp 845
function prototype or declaration /src/algo/align/splign/splign.cpp 713
function prototype or declaration /src/algo/align/util/align_compare.cpp 309
function prototype or declaration /src/algo/align/util/depth_filter.cpp 125
function prototype or declaration /src/algo/align/util/depth_filter.cpp 132
function prototype or declaration /src/algo/align/util/depth_filter.cpp 146
function prototype or declaration /src/algo/align/util/depth_filter.cpp 223
function prototype or declaration /src/algo/align/util/named_collection_score_impl.cpp 191
function prototype or declaration /src/algo/align/util/patch_sequence.cpp 80
function prototype or declaration /src/algo/align/util/score_lookup.cpp 925
function prototype or declaration /src/algo/align/util/score_lookup.cpp 946
function prototype or declaration /src/algo/align/util/tabular_fmt.cpp 597
function prototype or declaration /src/algo/align/util/tabular_fmt.cpp 1407
function prototype or declaration /src/algo/align/util/tabular_fmt.cpp 1422
function prototype or declaration /src/algo/align/util/tabular_fmt.cpp 1425
function prototype or declaration /src/algo/align/util/tabular_fmt.cpp 2384
function prototype or declaration /src/algo/blast/api/blast_aux.cpp 889
function prototype or declaration /src/algo/blast/api/blast_aux.cpp 948
function prototype or declaration /src/algo/blast/api/blast_aux.cpp 1136
function prototype or declaration /src/algo/blast/api/blast_objmgr_tools.cpp 600
function prototype or declaration /src/algo/blast/api/blast_options_builder.cpp 449
function prototype or declaration /src/algo/blast/api/cdd_pssm_input.cpp 790
function prototype or declaration /src/algo/blast/api/cdd_pssm_input.cpp 793
function prototype or declaration /src/algo/blast/blastinput/blast_input_aux.cpp 176
function prototype or declaration /src/algo/blast/blastinput/blast_input_aux.cpp 217
function prototype or declaration /src/algo/blast/proteinkmer/blastkmerindex.cpp 481
function prototype or declaration /src/algo/blast/unit_tests/api/split_query_unit_test.cpp 628
function prototype or declaration /src/algo/cobalt/hit.cpp 128
function prototype or declaration /src/algo/cobalt/hit.cpp 129
function prototype or declaration /src/algo/cobalt/hit.cpp 130
function prototype or declaration /src/algo/cobalt/hit.cpp 164
function prototype or declaration /src/algo/cobalt/hit.cpp 165
function prototype or declaration /src/algo/cobalt/hit.cpp 166
function prototype or declaration /src/algo/cobalt/prog.cpp 283
function prototype or declaration /src/algo/cobalt/prog.cpp 284
function prototype or declaration /src/algo/cobalt/prog.cpp 323
function prototype or declaration /src/algo/cobalt/prog.cpp 324
function prototype or declaration /src/algo/cobalt/prog.cpp 347
function prototype or declaration /src/algo/gnomon/aligncollapser.cpp 751
function prototype or declaration /src/algo/gnomon/annot.cpp 638
function prototype or declaration /src/algo/gnomon/annot.cpp 820
function prototype or declaration /src/algo/gnomon/asn1.cpp 674
function prototype or declaration /src/algo/gnomon/asn1.cpp 1108
function prototype or declaration /src/algo/gnomon/asn1.cpp 1112
function prototype or declaration /src/algo/gnomon/chainer.cpp 1236
function prototype or declaration /src/algo/gnomon/chainer.cpp 1242
function prototype or declaration /src/algo/gnomon/chainer.cpp 1569
function prototype or declaration /src/algo/gnomon/chainer.cpp 1585
function prototype or declaration /src/algo/gnomon/chainer.cpp 1591
function prototype or declaration /src/algo/gnomon/chainer.cpp 1810
function prototype or declaration /src/algo/gnomon/chainer.cpp 1816
function prototype or declaration /src/algo/gnomon/chainer.cpp 1834
function prototype or declaration /src/algo/gnomon/chainer.cpp 1840
function prototype or declaration /src/algo/gnomon/chainer.cpp 1861
function prototype or declaration /src/algo/gnomon/chainer.cpp 1867
function prototype or declaration /src/algo/gnomon/chainer.cpp 1885
function prototype or declaration /src/algo/gnomon/chainer.cpp 1891
function prototype or declaration /src/algo/gnomon/chainer.cpp 2068
function prototype or declaration /src/algo/gnomon/chainer.cpp 2074
function prototype or declaration /src/algo/gnomon/chainer.cpp 2377
function prototype or declaration /src/algo/gnomon/chainer.cpp 4488
function prototype or declaration /src/algo/gnomon/chainer.cpp 5103
function prototype or declaration /src/algo/gnomon/chainer.cpp 5129
function prototype or declaration /src/algo/gnomon/chainer.cpp 5229
function prototype or declaration /src/algo/gnomon/chainer.cpp 5335
function prototype or declaration /src/algo/gnomon/chainer.cpp 5375
function prototype or declaration /src/algo/gnomon/chainer.cpp 5566
function prototype or declaration /src/algo/gnomon/chainer.cpp 5624
function prototype or declaration /src/algo/gnomon/chainer.cpp 5651
function prototype or declaration /src/algo/gnomon/chainer.cpp 5706
function prototype or declaration /src/algo/gnomon/chainer.cpp 6737
function prototype or declaration /src/algo/gnomon/chainer.cpp 7833
function prototype or declaration /src/algo/gnomon/chainer.cpp 7841
function prototype or declaration /src/algo/gnomon/chainer.cpp 7901
function prototype or declaration /src/algo/gnomon/chainer.cpp 8074
function prototype or declaration /src/algo/gnomon/chainer.cpp 8145
function prototype or declaration /src/algo/gnomon/gnomon_objmgr.cpp 429
function prototype or declaration /src/algo/gnomon/gnomon_objmgr.cpp 763
function prototype or declaration /src/algo/gnomon/parse.cpp 619
function prototype or declaration /src/algo/gnomon/variations.cpp 208
function prototype or declaration /src/algo/id_mapper/id_mapper.cpp 1636
function prototype or declaration /src/algo/id_mapper/id_mapper.cpp 1653
function prototype or declaration /src/algo/primer/primercheck.cpp 1105
function prototype or declaration /src/algo/primer/primercheck.cpp 1109
function prototype or declaration /src/algo/sequence/gene_model.cpp 486
function prototype or declaration /src/algo/sequence/gene_model.cpp 2414
function prototype or declaration /src/algo/sequence/gene_model.cpp 2443
function prototype or declaration /src/algo/sequence/masking_delta.cpp 108
function prototype or declaration /src/algo/sequence/orf.cpp 109
function prototype or declaration /src/algo/structure/cd_utils/cuAlign.cpp 571
function prototype or declaration /src/algo/structure/cd_utils/cuCD.cpp 868
function prototype or declaration /src/algo/structure/cd_utils/cuSeqTreeAsnizer.cpp 102
function prototype or declaration /src/algo/structure/cd_utils/cuSimpleB2SWrapper.cpp 149
function prototype or declaration /src/app/blast/blast_app_util.cpp 685
function prototype or declaration /src/app/cn3d/cdd_annot_dialog.cpp 272
function prototype or declaration /src/app/cn3d/cdd_ibis_annot_dialog.cpp 311
function prototype or declaration /src/app/cn3d/cdd_ibis_annot_dialog.cpp 966
function definition Ctbl_seg /src/app/read_blast_result/tbl.hpp 58
function definition Ctbl_seg /src/app/read_blast_result/tbl.hpp 59
function prototype or declaration /src/app/table2asn/feature_table_reader.cpp 1173
function prototype or declaration /src/app/wig2table/wig2table.cpp 610
function definition CSimpleMakeFileContents /src/build-system/project_tree_builder/file_contents.cpp 108
function prototype or declaration CSimpleMakeFileContents /src/build-system/project_tree_builder/file_contents.hpp 138
function definition CPrjContext /src/build-system/project_tree_builder/msvc_sln_generator.cpp 104
function prototype or declaration CPrjContext /src/build-system/project_tree_builder/msvc_sln_generator.hpp 70
function definition CDataToolGeneratedSrc /src/build-system/project_tree_builder/proj_datatool_generated_src.cpp 221
function prototype or declaration CDataToolGeneratedSrc /src/build-system/project_tree_builder/proj_datatool_generated_src.hpp 70
function definition CProjItem /src/build-system/project_tree_builder/proj_item.cpp 196
function prototype or declaration CProjItem /src/build-system/project_tree_builder/proj_item.hpp 155
function definition CProjectItemsTree /src/build-system/project_tree_builder/proj_tree.cpp 87
function prototype or declaration CProjectItemsTree /src/build-system/project_tree_builder/proj_tree.hpp 97
function definition CSymResolver /src/build-system/project_tree_builder/resolver.cpp 316
function prototype or declaration CSymResolver /src/build-system/project_tree_builder/resolver.hpp 110
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 497
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 810
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 814
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 824
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 826
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 1067
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 1080
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 1185
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 1201
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 1249
function prototype or declaration /src/gui/objutils/adjust_consensus_splicesite.cpp 1258
function prototype or declaration /src/gui/objutils/basic_converters.cpp 388
function prototype or declaration /src/gui/objutils/report_trim.cpp 248
function prototype or declaration /src/gui/objutils/report_trim.cpp 282
function prototype or declaration /src/gui/objutils/sparse_functions.cpp 76
function prototype or declaration /src/gui/objutils/sparse_functions.cpp 264
function prototype or declaration /src/gui/objutils/utils.cpp 1876
function prototype or declaration /src/gui/objutils/utils.cpp 1883
function prototype or declaration /src/gui/objutils/utils.cpp 2003
function prototype or declaration /src/gui/objutils/utils.cpp 2126
function prototype or declaration /src/gui/objutils/utils.cpp 2134
function prototype or declaration /src/gui/objutils/utils.cpp 2140
function prototype or declaration /src/gui/objutils/visible_range.cpp 157
function prototype or declaration /src/gui/objutils/visible_range.cpp 206
function prototype or declaration /src/gui/packages/pkg_sequence_edit/add_global_code_break.cpp 410
function prototype or declaration /src/gui/packages/pkg_sequence_edit/add_global_code_break.cpp 414
function prototype or declaration /src/gui/packages/pkg_sequence_edit/add_global_code_break.cpp 419
function prototype or declaration /src/gui/packages/pkg_sequence_edit/edit_seq_ends_with_align.cpp 519
function prototype or declaration /src/gui/packages/pkg_sequence_edit/fuse_features.cpp 399
function prototype or declaration /src/gui/packages/pkg_sequence_edit/recompute_intervals.cpp 40
function prototype or declaration /src/gui/packages/pkg_sequence_edit/subprep_util.cpp 704
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 146
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 161
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 172
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 187
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 202
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 248
function prototype or declaration /src/gui/packages/pkg_sequence_edit/update_seq.cpp 1067
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 444
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 573
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 581
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 586
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 588
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 733
function prototype or declaration /src/gui/widgets/aln_multiple/align_mark_handler.cpp 750
function prototype or declaration /src/gui/widgets/aln_multiple/align_row.cpp 1809
function prototype or declaration /src/gui/widgets/aln_multiple/feature_graph.cpp 491
function prototype or declaration /src/gui/widgets/aln_multiple/feature_graph.cpp 1461
function prototype or declaration /src/gui/widgets/aln_multiple/feature_graph.cpp 1551
function prototype or declaration /src/gui/widgets/aln_score/aln_scoring.cpp 672
function prototype or declaration /src/gui/widgets/aln_score/simple_methods.cpp 694
function prototype or declaration /src/gui/widgets/aln_score/template_methods.cpp 235
function prototype or declaration /src/gui/widgets/aln_table/alnspan_vertmodel.cpp 830
function prototype or declaration /src/gui/widgets/aln_table/alnspan_vertmodel.cpp 847
function prototype or declaration /src/gui/widgets/edit/alignment_assistant.cpp 1611
function prototype or declaration /src/gui/widgets/edit/cds_translation_panel.cpp 1203
function prototype or declaration /src/gui/widgets/edit/edit_sequence.cpp 1373
function prototype or declaration /src/gui/widgets/edit/edit_sequence.cpp 1462
function prototype or declaration /src/gui/widgets/edit/locationl_list_ctrl.cpp 509
function prototype or declaration /src/gui/widgets/edit/single_cds_exception_panel.cpp 359
function prototype or declaration /src/gui/widgets/edit/single_cds_exception_panel.cpp 361
function prototype or declaration /src/gui/widgets/edit/single_cds_exception_panel.cpp 364
function prototype or declaration /src/gui/widgets/edit/vectortrimpanel.cpp 688
function prototype or declaration /src/gui/widgets/edit/vectortrimpanel.cpp 719
function prototype or declaration /src/gui/widgets/edit/vectortrimpanel.cpp 1241
function prototype or declaration /src/gui/widgets/edit/vectortrimpanel.cpp 1254
function prototype or declaration /src/gui/widgets/gl/linear_sel_handler.cpp 270
function prototype or declaration /src/gui/widgets/gl/linear_sel_handler.cpp 292
function prototype or declaration /src/gui/widgets/gl/linear_sel_handler.cpp 300
function prototype or declaration /src/gui/widgets/gl/linear_sel_handler.cpp 305
function prototype or declaration /src/gui/widgets/gl/linear_sel_handler.cpp 307
function prototype or declaration /src/gui/widgets/loaders/gb_load_option_panel.cpp 266
function prototype or declaration /src/gui/widgets/seq_graphic/alignment_glyph.cpp 526
function prototype or declaration /src/gui/widgets/seq_graphic/alignment_glyph.cpp 1709
function prototype or declaration /src/gui/widgets/seq_graphic/alignment_glyph.cpp 1839
function prototype or declaration /src/gui/widgets/seq_graphic/alignment_job.cpp 867
function prototype or declaration /src/gui/widgets/seq_graphic/alignment_job.cpp 916
function prototype or declaration /src/gui/widgets/seq_graphic/alignment_quality_score.cpp 164
function prototype or declaration /src/gui/widgets/seq_graphic/feature_glyph.cpp 297
function prototype or declaration /src/gui/widgets/seq_graphic/feature_glyph.cpp 1596
function prototype or declaration /src/gui/widgets/seq_graphic/feature_glyph.cpp 1676
function prototype or declaration /src/gui/widgets/seq_graphic/feature_glyph.cpp 1844
function prototype or declaration /src/gui/widgets/seq_graphic/feature_glyph.cpp 1852
function prototype or declaration /src/gui/widgets/seq_graphic/gui_object_info_seq_align.cpp 123
function prototype or declaration /src/gui/widgets/seq_graphic/seqgraphic_pane.cpp 1904
function prototype or declaration /src/gui/widgets/seq_graphic/seqgraphic_widget.cpp 1294
function prototype or declaration /src/gui/widgets/seq_text/text_sel_handler.cpp 276
function prototype or declaration /src/gui/widgets/seq_text/text_sel_handler.cpp 303
function prototype or declaration /src/gui/widgets/seq_text/text_sel_handler.cpp 311
function prototype or declaration /src/gui/widgets/seq_text/text_sel_handler.cpp 316
function prototype or declaration /src/gui/widgets/seq_text/text_sel_handler.cpp 318
function prototype or declaration /src/misc/hgvs/variation_util.cpp 541
function prototype or declaration /src/misc/hgvs/variation_util2.cpp 1268
function prototype or declaration /src/misc/hgvs/variation_util2.cpp 3984
function definition CCit_art_Base /src/objects/biblio/Cit_art_.cpp 248
function definition CStructured_comment_field_pair_Base /src/objects/macro/Structu_comment_field_pair_.cpp 60
function prototype or declaration /src/objects/seq/seq_loc_mapper_base.cpp 276
function prototype or declaration /src/objects/seq/seq_loc_mapper_base.cpp 304
function prototype or declaration /src/objects/seqalign/Dense_seg.cpp 1473
function prototype or declaration /src/objects/seqalign/Spliced_exon.cpp 62
function prototype or declaration /src/objects/seqloc/Packed_seqint.cpp 250
function prototype or declaration /src/objects/seqloc/Seq_loc.cpp 224
function prototype or declaration /src/objects/seqloc/Seq_loc.cpp 2142
function definition CSeq_loc_I /src/objects/seqloc/Seq_loc.cpp 2818
function prototype or declaration /src/objects/seqloc/Seq_loc.cpp 2823
function prototype or declaration /src/objects/seqloc/Seq_loc.cpp 4465
function prototype or declaration /src/objects/seqloc/Seq_loc_mix.cpp 318
function prototype or declaration /src/objmgr/annot_collector.cpp 229
function prototype or declaration /src/objmgr/seq_align_mapper.cpp 231
function prototype or declaration /src/objmgr/seq_align_mapper.cpp 272
function prototype or declaration /src/objmgr/seq_align_mapper.cpp 419
function prototype or declaration /src/objmgr/seq_loc_cvt.cpp 451
function prototype or declaration /src/objmgr/seq_loc_cvt.cpp 522
function prototype or declaration /src/objmgr/seq_map_switch.cpp 222
function prototype or declaration /src/objmgr/seq_map_switch.cpp 225
function prototype or declaration /src/objmgr/seq_table_info.cpp 682
function prototype or declaration /src/objmgr/test/test_objmgr_sv.cpp 263
function prototype or declaration /src/objmgr/util/autodef.cpp 476
function prototype or declaration /src/objmgr/util/feature.cpp 1804
function prototype or declaration /src/objmgr/util/feature.cpp 3525
function prototype or declaration /src/objmgr/util/sequence.cpp 878
function prototype or declaration /src/objmgr/util/sequence.cpp 990
function prototype or declaration /src/objmgr/util/sequence.cpp 1050
function prototype or declaration /src/objmgr/util/sequence.cpp 4732
function prototype or declaration /src/objmgr/util/unit_test/unit_test_fasta_ostream.cpp 193
function prototype or declaration /src/objmgr/util/unit_test/unit_test_fasta_ostream.cpp 241
function prototype or declaration /src/objmgr/util/unit_test/unit_test_fasta_ostream.cpp 290
function prototype or declaration /src/objmgr/util/unit_test/unit_test_fasta_ostream.cpp 349
function prototype or declaration /src/objmgr/util/unit_test/unit_test_fasta_ostream.cpp 393
function prototype or declaration /src/objtools/align/alngraphic.cpp 739
function prototype or declaration /src/objtools/align/alngraphic.cpp 1078
function prototype or declaration /src/objtools/align_format/align_format_util.cpp 4706
function prototype or declaration /src/objtools/alnmgr/pairwise_aln.cpp 168
function prototype or declaration /src/objtools/alnmgr/pairwise_aln.cpp 196
function prototype or declaration /src/objtools/alnmgr/sparse_ci.cpp 191
function prototype or declaration /src/objtools/alnmgr/sparse_ci.cpp 194
function prototype or declaration /src/objtools/cleanup/cleanup.cpp 4794
function prototype or declaration /src/objtools/cleanup/cleanup.cpp 4798
function prototype or declaration /src/objtools/cleanup/cleanup.cpp 4804
function prototype or declaration /src/objtools/cleanup/cleanup.cpp 4818
function prototype or declaration /src/objtools/cleanup/cleanup.cpp 4820
function prototype or declaration /src/objtools/cleanup/cleanup.cpp 4823
function prototype or declaration /src/objtools/edit/feattable_edit.cpp 1670
function prototype or declaration /src/objtools/edit/feattable_edit.cpp 1691
function prototype or declaration /src/objtools/edit/feature_propagate.cpp 449
function prototype or declaration /src/objtools/edit/feature_propagate.cpp 625
function prototype or declaration /src/objtools/edit/loc_edit.cpp 901
function prototype or declaration /src/objtools/edit/loc_edit.cpp 911
function prototype or declaration /src/objtools/edit/loc_edit.cpp 917
function prototype or declaration /src/objtools/edit/loc_edit.cpp 1253
function prototype or declaration /src/objtools/edit/loc_edit.cpp 1292
function prototype or declaration /src/objtools/edit/loc_edit.cpp 1572
function prototype or declaration /src/objtools/edit/seq_entry_edit.cpp 2127
function prototype or declaration /src/objtools/edit/seq_entry_edit.cpp 2140
function prototype or declaration /src/objtools/edit/seq_entry_edit.cpp 2657
function prototype or declaration /src/objtools/edit/seq_entry_edit.cpp 2688
function prototype or declaration /src/objtools/edit/unit_test/unit_test_pub_fix.cpp 81
function prototype or declaration /src/objtools/edit/unit_test/unit_test_pub_fix.cpp 94
function prototype or declaration /src/objtools/edit/unit_test/unit_test_pub_fix.cpp 125
function prototype or declaration /src/objtools/flatfile/fcleanup.cpp 259
function prototype or declaration /src/objtools/flatfile/fta_qscore.cpp 781
function prototype or declaration /src/objtools/flatfile/nucprot.cpp 1536
function prototype or declaration /src/objtools/flatfile/nucprot.cpp 1543
function prototype or declaration /src/objtools/flatfile/nucprot.cpp 1549
function prototype or declaration /src/objtools/flatfile/nucprot.cpp 1556
function prototype or declaration /src/objtools/flatfile/nucprot.cpp 1571
function prototype or declaration /src/objtools/flatfile/sp_ascii.cpp 3310
function prototype or declaration /src/objtools/format/cigar_formatter.cpp 242
function prototype or declaration /src/objtools/format/cigar_formatter.cpp 259
function prototype or declaration /src/objtools/format/cigar_formatter.cpp 317
function prototype or declaration /src/objtools/format/cigar_formatter.cpp 320
function prototype or declaration /src/objtools/format/feature_item.cpp 6740
function prototype or declaration /src/objtools/format/gather_items.cpp 4392
function prototype or declaration /src/objtools/format/gather_items.cpp 4395
function prototype or declaration /src/objtools/format/gather_items.cpp 4401
function prototype or declaration /src/objtools/format/gather_items.cpp 4407
function prototype or declaration /src/objtools/import/ftable/feat_util.cpp 123
function prototype or declaration /src/objtools/readers/bed_reader.cpp 190
function prototype or declaration /src/objtools/readers/gff3_location_merger.cpp 381
function prototype or declaration /src/objtools/readers/gff3_location_merger.cpp 392
function prototype or declaration /src/objtools/readers/gff3_location_merger.cpp 406
function prototype or declaration /src/objtools/readers/gff3_location_merger.cpp 417
function prototype or declaration /src/objtools/readers/gff3_location_merger.cpp 425
function prototype or declaration /src/objtools/readers/glimmer_reader.cpp 234
function prototype or declaration /src/objtools/readers/glimmer_reader.cpp 253
function prototype or declaration /src/objtools/readers/gtf_location_merger.cpp 143
function prototype or declaration /src/objtools/readers/wiggle_reader.cpp 372
function prototype or declaration /src/objtools/test/objmgr/id64_unit_test.cpp 390
function prototype or declaration /src/objtools/test/objmgr/id64_unit_test.cpp 423
function prototype or declaration /src/objtools/test/objmgr/id64_unit_test.cpp 461
function prototype or declaration /src/objtools/test/objmgr/id_unit_test.cpp 436
function prototype or declaration /src/objtools/test/objmgr/id_unit_test.cpp 476
function prototype or declaration /src/objtools/test/objmgr/id_unit_test.cpp 519
function prototype or declaration /src/objtools/test/objmgr/id_unit_test.cpp 571
function prototype or declaration /src/objtools/variation/variation_utils.cpp 1405
function prototype or declaration /src/objtools/writers/write_util.cpp 660
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 1146
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 1231
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 1255
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 1328
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 1378
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 1446
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 2333
function prototype or declaration /src/sra/data_loaders/bam/bamloader_impl.cpp 3058
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 1444
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 1454
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 1819
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 1855
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 1948
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 1964
function prototype or declaration /src/sra/data_loaders/csra/csraloader_impl.cpp 2365
function prototype or declaration /src/sra/data_loaders/snp/id2snp_impl.cpp 819
function prototype or declaration /src/sra/data_loaders/snp/id2snp_impl.cpp 827
function prototype or declaration /src/sra/data_loaders/snp/test/test_snp_loader.cpp 161
function prototype or declaration /src/sra/data_loaders/snp/test/test_snp_loader.cpp 195
function prototype or declaration /src/sra/readers/sra/graphread.cpp 702
function prototype or declaration /src/sra/readers/sra/graphread.cpp 769
function prototype or declaration /src/sra/readers/sra/snpread.cpp 982
function prototype or declaration /src/sra/readers/sra/snpread.cpp 986
function prototype or declaration /src/sra/readers/sra/snpread.cpp 1007
function prototype or declaration /src/sra/readers/sra/snpread.cpp 2412
function prototype or declaration /src/sra/readers/sra/snpread.cpp 2651
function prototype or declaration /src/sra/readers/sra/snpread.cpp 2898
function prototype or declaration /src/sra/readers/sra/snpread.cpp 2909
function prototype or declaration /src/sra/readers/sra/snpread.cpp 3014
function prototype or declaration /src/sra/readers/sra/snpread.cpp 3023
function prototype or declaration /src/sra/readers/sra/test/snp_test.cpp 353
function prototype or declaration /src/sra/readers/sra/test/snp_test.cpp 467
function prototype or declaration /src/sra/readers/sra/test/snp_test.cpp 631
function prototype or declaration /src/sra/readers/sra/test/snp_test.cpp 673
function prototype or declaration /src/sra/readers/sra/test/snp_test.cpp 742
function prototype or declaration /src/sra/readers/sra/test/vdb_test.cpp 663
function prototype or declaration /src/sra/readers/sra/test/vdb_test.cpp 1219
function prototype or declaration /src/sra/readers/sra/wgsread.cpp 6114
function prototype or declaration /src/sra/readers/sra/wgsread.cpp 6727

469 declarations in 177 files.

References to SetFrom

File Line
/include/algo/gnomon/Gnomon_param_.hpp 117 118 376 383
/include/algo/gnomon/gnomon_model.hpp 207 805
/include/algo/sequence/compare_feats.hpp 536 544
/include/gui/packages/pkg_sequence/wiggle_export_params.hpp 90
/include/gui/utils/attr_range_coll.hpp 112 116 122
/include/gui/widgets/seq_graphic/alngraphic_ds.hpp 203
/include/objects/biblio/Cit_art_.hpp 223 224 374
/include/objects/blastxml2/Range_.hpp 99 100 166 173
/include/objects/cn3d/Cn3d_residue_range_.hpp 97 98 163 170
/include/objects/gbseq/GBInterval_.hpp 103 104 218 225
/include/objects/insdseq/INSDInterval_.hpp 119 120 234 241
/include/objects/macro/DBLink_field_pair_.hpp 95 96 161 168
/include/objects/macro/Location_interval_.hpp 91 92 157 164
/include/objects/macro/Molinfo_completedness_pair_.hpp 95 96 161 168
/include/objects/macro/Molinfo_mol_class_pair_.hpp 95 96 161 168
/include/objects/macro/Molinfo_molecule_pair_.hpp 95 96 161 168
/include/objects/macro/Molinfo_strand_pair_.hpp 95 96 161 168
/include/objects/macro/Molinfo_technique_pair_.hpp 95 96 161 168
/include/objects/macro/Molinfo_topology_pair_.hpp 95 96 161 168
/include/objects/macro/Structu_comment_field_pair_.hpp 95 96 154
/include/objects/mim/Mim_page_.hpp 95 96 97 156 163 170
/include/objects/mmdb3/Residue_interval_pntr_.hpp 109 110 218 225
/include/objects/pcsubstance/PC_Group_.hpp 314 741
/include/objects/seqcode/Seq_map_table_.hpp 104 105 210 217
/include/objects/seqloc/Seq_interval.hpp 115
/include/objects/seqloc/Seq_interval_.hpp 108 109 223 230
/include/objects/seqloc/Seq_loc.hpp 721
/include/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp 137 138 328 335
/include/objmgr/impl/annot_object.hpp 76 92
/include/objtools/eutils/esearch/Translation_.hpp 94 95 96 156 163 170
/include/objtools/readers/wiggle_reader.hpp 168
/include/sra/readers/bam/bamindex.hpp 948 954
/include/util/range.hpp 170 186 190 211
/include/util/range_coll.hpp 315 363 371
/src/algo/align/contig_assembly/contig_assembly.cpp 263 868
/src/algo/align/mergetree/equiv_range.cpp 495 549 781 784 963 1008
/src/algo/align/ngalign/alignment_scorer.cpp 298
/src/algo/align/ngalign/app/ngalign_app.cpp 543 565 587 609 735 757
/src/algo/align/ngalign/banded_aligner.cpp 89 517 518 535 536 542 543 595 596
/src/algo/align/ngalign/inversion_merge_aligner.cpp 323
/src/algo/align/ngalign/result_set.cpp 449 451 456 458
/src/algo/align/ngalign/sequence_set.cpp 227 343
/src/algo/align/ngalign/unordered_spliter.cpp 250 288 304 334 377 391 426 439 611
/src/algo/align/prosplign/Info.cpp 845
/src/algo/align/prosplign/compartments.cpp 361 376 380
/src/algo/align/splign/splign.cpp 713
/src/algo/align/splign/splign_exon_trim.cpp 160
/src/algo/align/util/align_compare.cpp 309 350
/src/algo/align/util/depth_filter.cpp 125 132 139 146 223
/src/algo/align/util/named_collection_score_impl.cpp 191
/src/algo/align/util/patch_sequence.cpp 80
/src/algo/align/util/score_lookup.cpp 925 946
/src/algo/align/util/tabular_fmt.cpp 597 1407 1422 1425 2384
/src/algo/align/util/unit_test/genomic_compart_unit_test.cpp 88 92
/src/algo/blast/api/blast_aux.cpp 840 889 948 1133 1136
/src/algo/blast/api/blast_objmgr_tools.cpp 600
/src/algo/blast/api/blast_options_builder.cpp 449
/src/algo/blast/api/blast_seqalign.cpp 332 346 832 852 861 869 906 912 948 952 987 991 1014 1024 1047 1349 1352 1357 1364 1367 1373 1588 1816 2065 2068 2073 2076
/src/algo/blast/api/cdd_pssm_input.cpp 790 793
/src/algo/blast/api/split_query_cxx.cpp 200
/src/algo/blast/api/winmask_filter.cpp 175
/src/algo/blast/blast_sra_input/blast_sra_input.cpp 232
/src/algo/blast/blastinput/blast_fasta_input.cpp 431
/src/algo/blast/blastinput/blast_input_aux.cpp 176 217
/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp 1085 1933 1954 1972 1993 2014 2040 2311
/src/algo/blast/format/blastxml2_format.cpp 607
/src/algo/blast/proteinkmer/blastkmerindex.cpp 481
/src/algo/blast/proteinkmer/blastkmerutils.cpp 391
/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp 3571
/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp 915 942 2046
/src/algo/blast/unit_tests/api/split_query_unit_test.cpp 115 624 628 689
/src/algo/blast/unit_tests/api/test_objmgr.cpp 90 107 154
/src/algo/cobalt/blast.cpp 77
/src/algo/cobalt/hit.cpp 128 129 130 164 165 166
/src/algo/cobalt/prog.cpp 283 284 323 324 347 1509
/src/algo/cobalt/rps.cpp 266
/src/algo/cobalt/unit_test/cobalt_unit_test.cpp 446
/src/algo/gnomon/aligncollapser.cpp 751 876 877 923 931 1465 1467 1561 1567 1878 1883 1886 2371 2512 2667
/src/algo/gnomon/annot.cpp 638 820
/src/algo/gnomon/asn1.cpp 674 1108 1112
/src/algo/gnomon/chainer.cpp 724 730 1236 1242 1490 1492 1498 1500 1522 1569 1585 1591 1810 1816 1834 1840 1861 1867 1885 1891 2068 2074 2377 4456 4469 4488 4712 5103 5129 5229 5249 5335 5375 5566 5582 5624 5651 5706 5765 5773 5973 5982 5986 6737 7833 7841 7901 8074 8076 8145 8367 8371
/src/algo/gnomon/gnomon_model.cpp 423 438 452 464 536 594 632 638 645 776 795 828 842 848 1068 1079 1442 1445 1481 1913 2102 2151 2220 2365 2459 2533 2537
/src/algo/gnomon/gnomon_objmgr.cpp 429 567 621 660 763
/src/algo/gnomon/parse.cpp 619
/src/algo/gnomon/variations.cpp 208 611
/src/algo/id_mapper/id_mapper.cpp 1636 1653
/src/algo/id_mapper/unit_test/unit_test_id_mapper.cpp 165 173 183 195 207 218 248 255 283 291 319 327 355 364 392 401 428 436 507 515 668 677 706 716 728 758 861 892 924 1020 1057 1067
/src/algo/primer/primercheck.cpp 213 1105 1109
/src/algo/seqqa/single_aln_tests.cpp 120 129 214 339 343 352 356
/src/algo/seqqa/xcript_tests.cpp 169 172
/src/algo/sequence/antigenic.cpp 123
/src/algo/sequence/coiled_coil.cpp 241 252
/src/algo/sequence/demo/xcompareannotsdemo.cpp 275 1016 1022 1200 1789 1835
/src/algo/sequence/gene_model.cpp 486 1291 1611 1624 1637 1685 2037 2270 2286 2414 2443
/src/algo/sequence/internal_stops.cpp 158 161 184 215
/src/algo/sequence/masking_delta.cpp 108
/src/algo/sequence/orf.cpp 109 289
/src/algo/sequence/project_exons.cpp 435 482 490 777 852 1090 1120
/src/algo/sequence/regexp_loc.cpp 72
/src/algo/sequence/restriction.cpp 518
/src/algo/sequence/transform_align.cpp 805 809
/src/algo/structure/cd_utils/cuAlign.cpp 529 564 571
/src/algo/structure/cd_utils/cuBlast2Seq.cpp 564
/src/algo/structure/cd_utils/cuCD.cpp 841 868
/src/algo/structure/cd_utils/cuSeqTreeAsnizer.cpp 102 283
/src/algo/structure/cd_utils/cuSimpleB2SWrapper.cpp 149
/src/app/annotwriter/annotwriter.cpp 396
/src/app/asn2flat/asn2flat.cpp 1178
/src/app/blast/blast_app_util.cpp 685
/src/app/cn3d/cdd_annot_dialog.cpp 272
/src/app/cn3d/cdd_ibis_annot_dialog.cpp 299 301 309 311 966
/src/app/cn3d/cn3d_blast.cpp 250
/src/app/cn3d/messenger.cpp 525
/src/app/cn3d/structure_set.cpp 1392 1397
/src/app/cn3d/style_manager.cpp 1574
/src/app/convert_seq/gff_reader.cpp 326 337 741 803 1420 1431
/src/app/objmgr/demo/objmgr_demo.cpp 1398 1400 1464
/src/app/read_blast_result/problems.cpp 972
/src/app/read_blast_result/read_blast.cpp 490 493
/src/app/read_blast_result/tbl.hpp 58 59
/src/app/table2asn/fcs_reader.cpp 350
/src/app/table2asn/feature_table_reader.cpp 647 1173 1175 1243
/src/app/wig2table/wig2table.cpp 610
/src/build-system/project_tree_builder/file_contents.cpp 61 69 108
/src/build-system/project_tree_builder/file_contents.hpp 138
/src/build-system/project_tree_builder/msvc_sln_generator.cpp 56 87 104
/src/build-system/project_tree_builder/msvc_sln_generator.hpp 70
/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp 53 62 221
/src/build-system/project_tree_builder/proj_datatool_generated_src.hpp 70
/src/build-system/project_tree_builder/proj_item.cpp 131 139 196
/src/build-system/project_tree_builder/proj_item.hpp 155
/src/build-system/project_tree_builder/proj_tree.cpp 59 68 87
/src/build-system/project_tree_builder/proj_tree.hpp 97
/src/build-system/project_tree_builder/resolver.cpp 49 63 316
/src/build-system/project_tree_builder/resolver.hpp 110
/src/gui/objutils/adjust_consensus_splicesite.cpp 349 497 735 753 776 793 810 814 824 826 1067 1080 1185 1201 1249 1258
/src/gui/objutils/basic_converters.cpp 361 388 439 467 870 1199
/src/gui/objutils/cmd_add_cds.cpp 161 342
/src/gui/objutils/cmd_add_seqentry.cpp 209
/src/gui/objutils/convert_raw_to_delta.cpp 456
/src/gui/objutils/doi_lookup.cpp 909 988 1012 1019 1026
/src/gui/objutils/feat_label.cpp 50
/src/gui/objutils/link_utils.cpp 294
/src/gui/objutils/macro_fn_pubfields.cpp 1370 2771 2829 3523
/src/gui/objutils/pub_fieldtype.cpp 348 352 356
/src/gui/objutils/report_trim.cpp 248 282 461
/src/gui/objutils/sparse_alignment.cpp 109
/src/gui/objutils/sparse_functions.cpp 63 76 79 264 267
/src/gui/objutils/test/test_cmd_change_seqentry.cpp 152 201
/src/gui/objutils/test/test_cmd_change_seqfeat.cpp 87
/src/gui/objutils/test/test_convert_raw_to_delta.cpp 85
/src/gui/objutils/test/test_label.cpp 76
/src/gui/objutils/util_cmds.cpp 932 1134
/src/gui/objutils/utils.cpp 1876 1883 1987 1991 1995 1998 1999 2003 2126 2134 2140 2184 2186 2190 2224 2226 2230
/src/gui/objutils/visible_range.cpp 157 171 175 181 185 206 266 273 289
/src/gui/packages/pkg_alignment/align_span_view.cpp 506
/src/gui/packages/pkg_alignment/create_gene_model_tool_manager.cpp 714 1003
/src/gui/packages/pkg_alignment/create_needleman_wunsch_tool_manager.cpp 338
/src/gui/packages/pkg_alignment/cross_align_view.cpp 317 323 337 346
/src/gui/packages/pkg_alignment/dot_matrix_view.cpp 323 329 343 352
/src/gui/packages/pkg_alignment/prosplign_tool.cpp 296
/src/gui/packages/pkg_sequence/component_search_tool.cpp 375 407
/src/gui/packages/pkg_sequence/cpg_search_tool.cpp 595
/src/gui/packages/pkg_sequence/orf_search_tool.cpp 707 782
/src/gui/packages/pkg_sequence/seq_text_view.cpp 339
/src/gui/packages/pkg_sequence/view_feattable.cpp 660
/src/gui/packages/pkg_sequence/view_graphic.cpp 579 800
/src/gui/packages/pkg_sequence/windowmasker_tool.cpp 457
/src/gui/packages/pkg_sequence_edit/add_feature_between_dlg.cpp 474
/src/gui/packages/pkg_sequence_edit/add_global_code_break.cpp 368 375 386 410 414 419
/src/gui/packages/pkg_sequence_edit/adjust_features_for_gaps.cpp 750
/src/gui/packages/pkg_sequence_edit/bulk_feature_add_dlg_std.cpp 237
/src/gui/packages/pkg_sequence_edit/bulk_location_panel.cpp 358
/src/gui/packages/pkg_sequence_edit/cds_to_mat_peptide.cpp 386
/src/gui/packages/pkg_sequence_edit/convert_rpt_unit_range_to_location.cpp 76
/src/gui/packages/pkg_sequence_edit/convert_selected_gaps.cpp 252 547
/src/gui/packages/pkg_sequence_edit/correct_genes_dialog.cpp 331
/src/gui/packages/pkg_sequence_edit/dll_register.cpp 1081 1100 1112 1135
/src/gui/packages/pkg_sequence_edit/edit_seq_ends_with_align.cpp 519
/src/gui/packages/pkg_sequence_edit/editing_action_desc.cpp 2266 2271 2277 2365 2433
/src/gui/packages/pkg_sequence_edit/editing_action_features.cpp 408
/src/gui/packages/pkg_sequence_edit/editingbtnspanel.cpp 2330 2339 2350
/src/gui/packages/pkg_sequence_edit/exon_from_cds.cpp 287 333
/src/gui/packages/pkg_sequence_edit/extend_cds_to_stop.cpp 269 273 320 325
/src/gui/packages/pkg_sequence_edit/featedit_util.cpp 1169 2264
/src/gui/packages/pkg_sequence_edit/find_asn1_dlg.cpp 1686 1693 1698 1704
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/src/gui/packages/pkg_sequence_edit/unit_test/unit_test_sequpdate.cpp 4158 4207
/src/gui/packages/pkg_sequence_edit/update_seq.cpp 115 128 146 161 172 187 202 248 1067
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/src/gui/widgets/aln_crossaln/cross_aln_widget.cpp 495 511
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/src/objtools/validator/validerror_bioseq.cpp 4189 4199
/src/objtools/variation/variation_utils.cpp 1405 1578 1597 1625 1645 1664
/src/objtools/writers/agp_write.cpp 301
/src/objtools/writers/aln_writer.cpp 112
/src/objtools/writers/gff3_writer.cpp 2217
/src/objtools/writers/write_util.cpp 660
/src/sample/app/objmgr/feattree_sample.cpp 170
/src/sample/app/objmgr/objmgr_sample.cpp 212
/src/sra/data_loaders/bam/bamloader_impl.cpp 1146 1231 1255 1305 1328 1378 1446 2333 3058
/src/sra/data_loaders/bam/test/test_bam_loader.cpp 184 244 303 362 420 481 541 629 720 1264 1370 1503 1731 1792 1855 1924 2010 2086 2266 2338 2420
/src/sra/data_loaders/csra/csraloader_impl.cpp 1444 1454 1819 1855 1948 1964 2365
/src/sra/data_loaders/csra/test/test_csra_loader.cpp 178 263 346 433 697 789 864 941 1020 1190 1354 1561 1746 1938 2654 2733
/src/sra/data_loaders/snp/id2snp_impl.cpp 819 827
/src/sra/data_loaders/snp/test/test_snp_loader.cpp 161 195
/src/sra/readers/bam/bamgraph.cpp 317 448 470
/src/sra/readers/bam/bamindex.cpp 506 1512 2219 2220 2604
/src/sra/readers/bam/bamread.cpp 2498 2500
/src/sra/readers/bam/test/bam_compare.cpp 493 495
/src/sra/readers/bam/test/bam_test_common.cpp 230 260
/src/sra/readers/bam/test/samtools.cpp 128 130 139 257 278
/src/sra/readers/sra/csraread.cpp 718 1702 2274
/src/sra/readers/sra/graphread.cpp 702 711 769 778 831
/src/sra/readers/sra/snpread.cpp 895 982 986 1007 1699 2412 2651 2898 2909 3014 3023
/src/sra/readers/sra/test/graph_test.cpp 202
/src/sra/readers/sra/test/snp_test.cpp 353 403 467 631 673 742
/src/sra/readers/sra/test/vdb_test.cpp 663 708 1219
/src/sra/readers/sra/wgsread.cpp 3469 4800 5097 5208 5248 5555 6114 6727 7828

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