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Definitions for C_Segs

Type Member of File Line
class CSeq_align_Base /include/objects/seqalign/Seq_align_.hpp 101
function prototype or declaration CSeq_align_Base::C_Segs /include/objects/seqalign/Seq_align_.hpp 106
function prototype or declaration CSeq_align_Base::C_Segs /include/objects/seqalign/Seq_align_.hpp 211
function definition CSeq_align_Base::C_Segs /src/objects/seqalign/Seq_align_.cpp 283

4 declarations in 2 files.

References to C_Segs

File Line
/include/algo/structure/cd_utils/cuAlign.hpp 48
/include/objects/seq/seq_align_mapper_base.hpp 131 132
/include/objects/seq/seq_loc_mapper_base.hpp 723 724
/include/objects/seqalign/Seq_align_.hpp 101 106 211 211 212 212 230 359 359 365 372 382 388 394 394 401 401 408 414 420 420 427 427 434 440 446 452
/include/objects/seqalign/seqalign_macros.hpp 55 56 97 109 121
/include/objtools/readers/gff2_reader.hpp 224
/include/objtools/validator/validerror_align.hpp 77 78 79 80 88
/src/algo/align/ngalign/alignment_scorer.cpp 105
/src/algo/align/ngalign/banded_aligner.cpp 651
/src/algo/align/ngalign/inversion_merge_aligner.cpp 266 267
/src/algo/align/util/named_collection_score_impl.cpp 155 406
/src/algo/align/util/score_builder.cpp 854
/src/algo/blast/api/blast_seqalign.cpp 306 317
/src/algo/blast/api/psi_pssm_input.cpp 247 249 254
/src/algo/blast/format/sam.cpp 69
/src/algo/blast/unit_tests/api/blast_test_util.cpp 105
/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp 135 138 143
/src/algo/cobalt/blast.cpp 241 264 267 416 438 441
/src/algo/structure/cd_utils/cuCdUpdater.cpp 607 691 692 706 868 1200 1201 1237
/src/algo/structure/cd_utils/cuSeqAnnotFromFasta.cpp 700
/src/algo/structure/struct_util/su_alignment_set.cpp 245
/src/algo/structure/struct_util/su_block_multiple_alignment.cpp 1256 1259
/src/app/cn3d/alignment_set.cpp 177
/src/app/cn3d/block_multiple_alignment.cpp 1607 1610
/src/app/read_blast_result/read_blast.cpp 461
/src/gui/objutils/fingp_seqalign.cpp 341 343 347 348 351 354 355 358 361 364 367 371
/src/gui/objutils/report_trim.cpp 503
/src/gui/packages/pkg_alignment/align_span_view.cpp 323 327 328
/src/gui/packages/pkg_sequence_edit/remove_sequences_from_alignments.cpp 289 290 293 296 297 304 307 308 311 319 322 345 346 349 358 359 372 376 377 380 388 392 431 492 495 496 497 499
/src/gui/widgets/aln_multiple/alnmulti_ds_builder.cpp 304
/src/gui/widgets/edit/alignment_assistant.cpp 561 605
/src/gui/widgets/edit/paint_alignment.cpp 143
/src/gui/widgets/edit/vectortrimpanel.cpp 1452
/src/gui/widgets/hit_matrix/dense_ds.cpp 217 428 472 731
/src/objects/seq/seq_align_mapper_base.cpp 192 195 198 201 204 207 210 417 507 2995 3000 3010 3015 3025 3030 3035
/src/objects/seq/seq_loc_mapper_base.cpp 1354 1384 1410 1444 1470 1481 1486 1515 1525 1531 1541 1547 1558 1572
/src/objects/seqalign/Seq_align.cpp 76 82 85 91 94 109 112 127 130 156 159 162 165 171 176 233 236 242 255 257 259 261 262 263 276 278 280 282 283 284 297 299 301 303 305 307 320 323 326 330 339 343 360 375 381 657 660 665 668 671 688 704 708 709 714 760
/src/objects/seqalign/Seq_align_.cpp 74 80 102 132 143 148 153 153 159 159 165 165 175 175 181 181 187 187 197 197 203 203 209 209 219 219 225 225 231 231 241 241 247 247 253 253 266 283 283 289 350
/src/objmgr/annot_object.cpp 569 573 575 577 611 613 656 658 660 682 684 718 720 727 729 779 781
/src/objmgr/split/id_range.cpp 179 181 182 186 189 190 196 199 204 207
/src/objmgr/test/test_helper.cpp 282 284
/src/objtools/align/alngraphic.cpp 304 307 310
/src/objtools/align_format/align_format_util.cpp 710 713 716 763 766 769 1049 4312 4315 4318 4663
/src/objtools/align_format/seqalignfilter.cpp 369 370 388 404 405 564
/src/objtools/align_format/showalign.cpp 1828 1836 1843 2010 2045 2048 3170 3174 3186 3190 3224 3225 3233 3234 3261 3262 3292 3293
/src/objtools/align_format/unit_test/blast_test_util.cpp 83
/src/objtools/cddalignview/cav_alignset.cpp 213
/src/objtools/cleanup/autogenerated_cleanup.cpp 280 283 286 289 292 295 298 301
/src/objtools/cleanup/autogenerated_cleanup.hpp 207
/src/objtools/edit/seq_entry_edit.cpp 1017 1105 2229
/src/objtools/edit/unit_test/unit_test_entry_edit.cpp 823 875 927
/src/objtools/flatfile/add.cpp 1353
/src/objtools/readers/gff2_reader.cpp 874 1071
/src/objtools/validator/validerror_align.cpp 80 98 101 105 109 112 116 128 134 135 163 1304 1311 1314 1319
/src/objtools/writers/aln_writer.cpp 91 93 95 97
/src/objtools/writers/psl_writer.cpp 131 135 142

371 references in 56 files.