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Definitions for Align

Type	Member of	File	Line
function prototype or declaration	CContigAssembly	/include/algo/align/contig_assembly/contig_assembly.hpp	82
function prototype or declaration	CNgAligner	/include/algo/align/ngalign/ngalign.hpp	77
function definition	CContigAssembly	/src/algo/align/contig_assembly/contig_assembly.cpp	602
function prototype or declaration		/src/algo/align/mergetree/app/merge_tree_app.cpp	262
function prototype or declaration		/src/algo/align/mergetree/app/merge_tree_app.cpp	273
function definition	CNgAligner	/src/algo/align/ngalign/ngalign.cpp	110
function prototype or declaration		/src/algo/id_mapper/app/id_mapper_app.cpp	425
function definition	CAligner	/src/app/oligofar/caligner-align.cpp	26
function prototype or declaration	CAligner	/src/app/oligofar/caligner.hpp	59
function prototype or declaration		/src/app/oligofar/caligntest.cpp	147
function prototype or declaration	IAligner	/src/app/oligofar/ialigner.hpp	38
function prototype or declaration	TAligner_fast	/src/app/oligofar/taligner_fast.hpp	18
function definition	TAligner_fast	/src/app/oligofar/taligner_fast.hpp	37
function prototype or declaration	TAligner_HSP	/src/app/oligofar/taligner_hsp.hpp	17
function definition	TAligner_HSP	/src/app/oligofar/taligner_hsp.hpp	23
function prototype or declaration	TAligner_SW	/src/app/oligofar/taligner_sw.hpp	33
macro (un)definition		/src/connect/ncbi_mbedtls.c	879
enumerator	__anon12	/src/util/lmdb/mdb.c	2332

18 declarations in 15 files.

References to Align

File	Line
/include/algo/align/contig_assembly/contig_assembly.hpp	82
/include/algo/align/ngalign/banded_aligner.hpp	69 72 74 75
/include/algo/align/ngalign/ngalign.hpp	77
/include/objects/seq/seq_macros.hpp	366
/src/algo/align/contig_assembly/contig_assembly.cpp	602
/src/algo/align/contig_assembly/demo/demo_contig_assembly.cpp	116
/src/algo/align/mergetree/app/merge_tree_app.cpp	151 153 153 154 154 262 264 266 273 275 277 433 435 436 437 438
/src/algo/align/mergetree/equiv_range.cpp	756 760 762 768
/src/algo/align/mergetree/merge_tree.cpp	318 321 322 323 324 565 568 569 570 571 855 857 859 872 873 874 875
/src/algo/align/ngalign/alignment_scorer.cpp	747 755 763 765 769
/src/algo/align/ngalign/app/ngalign_app.cpp	348
/src/algo/align/ngalign/banded_aligner.cpp	432 433 509 511 512 514 515 517 518 520 521 523 551 553 554 557 558 559 560 569 572 573 574 575 593 595 596 598 599 601
/src/algo/align/ngalign/blast_aligner.cpp	309 310 313 437 438 441
/src/algo/align/ngalign/inversion_merge_aligner.cpp	380 381 397 398
/src/algo/align/ngalign/merge_aligner.cpp	171 172 198 199 212
/src/algo/align/ngalign/ngalign.cpp	110 153 154 157
/src/algo/id_mapper/app/id_mapper_app.cpp	104 425 453 455 485 487 554 558 560 566 568 577 605 613 650 651
/src/app/oligofar/caligner-align.cpp	26
/src/app/oligofar/caligner.hpp	59
/src/app/oligofar/caligntest.cpp	147
/src/app/oligofar/cfilter.cpp	128
/src/app/oligofar/csamalignments.cpp	623
/src/app/oligofar/daligner.hpp	12 42 90
/src/app/oligofar/ialigner.hpp	38
/src/app/oligofar/taligner_fast.hpp	18 37
/src/app/oligofar/taligner_hsp.hpp	17 23
/src/app/oligofar/taligner_sw.hpp	33 91
/src/connect/ncbi_mbedtls.c	879 886 896 946 947 948 962 964 966
/src/gui/app/project_tools/gbproject_tool.cpp	355 356
/src/gui/packages/pkg_alignment/find_overlap_tool.cpp	248
/src/gui/packages/pkg_alignment/ngalign_job.cpp	298
/src/gui/packages/pkg_sequence_edit/sequpd.cpp	537
/src/sample/app/serial/seqannot_splicer_util.cpp	431
/src/util/lmdb/mdb.c	2332 2338 2339 2340 2340

152 references in 34 files.