NCBI C++ ToolKit
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test_assert_impl.h File Reference
#include <crtdbg.h>
#include <stdio.h>
#include <windows.h>
#include <assert.h>
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Macros

#define Type   aType
 
#define _ASSERT   assert
 
#define _TROUBLE   do { assert(0); abort(); } while (0)
 

Functions

static LONG CALLBACK _SEH_Handler (EXCEPTION_POINTERS *ep)
 
static int _SuppressDiagPopupMessages (void)
 

Variables

static int(* _SDPM )(void) = _SuppressDiagPopupMessages
 

Macro Definition Documentation

#define _ASSERT   assert

Definition at line 148 of file test_assert_impl.h.

Referenced by CObjectManager::AcquireDataLoader(), CInitMutexPool::AcquireMutex(), CObjectManager::AcquireSharedBioseq(), CObjectManager::AcquireSharedSeq_annot(), CObjectManager::AcquireSharedSeq_entry(), CWindowManagerService::ActivateClient(), CWindowManagerService::ActivateClients(), CDockContainer::ActivateClients(), CProjectService::ActivateProjectView(), SChunkInfo::Add(), CAlnMixMatches::Add(), CFilterSet2::Add(), CDBUDRandomMapper::Add(), CSeq_annot_Info::Add(), CCache< TKey, TValue, THandler, TLock, TSize >::Add(), CCgiCookies::Add(), CArgs::Add(), SCommon8Bytes::Add(), SSeqTableContent::Add(), CPluginReply::AddAction(), CBioseq_Base_Info::AddAnnot(), CTSE_ScopeInfo::AddAnnot(), CUrlArgs::AddArgument(), CCgiEntries_Parser::AddArgument(), CCommandLineParser::AddAssociation(), CGapAnalysis::AddBioseqGaps(), AbstractLexer::AddChars(), CBLAST_Dlg_Item::AddChild(), CTSE_Split_Info::AddChunk(), CWindowManagerService::AddClient(), CDockContainer::AddClientToCentralPane(), CObjectList::AddColumn(), CSplitter::AddColumn(), CCommandLineParser::AddCommand(), CCommandLineParser::AddCommandCategory(), CMenuService::AddContributor(), CDataMiningService::AddContributor(), CNetScheduleServer::AddDefaultListener(), CBioseq_set_Info::AddEntry(), CTSE_ScopeInfo::AddEntry(), CExtraEntryCollector::AddEntry(), CArchiveZip::AddEntryFromFileSystem(), CGeneModel::AddExon(), CExtensionRegistry::AddExtension(), CExtensionRegistry::AddExtensionPoint(), CSeq_annot_Info::AddFeatId(), CBioTreeForest< BioTree >::AddFeature(), CFeatTree::AddFeature(), CFileLoadManager::AddFileFormat(), CAttribMenu::AddFloatReadOnly(), CGapAnalysis::AddGap(), CGeneModel::AddGgapExon(), CGraphContainer::AddGraph(), CPopupMenuEvent::AddHandler(), impl::CBaseCmd::AddHint(), CTL_BCPInCmd::AddHint(), CProteinAlignText::AddHoleText(), CBioseq_ScopeInfo::AddId(), CBuildDatabase::AddIds(), CScopeInfo_Base::AddInfoLock(), CRasterizer< A >::AddInterval(), CAttribMenu::AddIntReadOnly(), CSelectProjectOptions::AddItemsToWorkspace(), CPackString::AddNew(), CTreeNode< TValue, TKeyGetter >::AddNode(), CGeneModel::AddNormalExon(), CCommandLineParser::AddOption(), impl::CBaseCmd::AddOrderHint(), CTL_BCPInCmd::AddOrderHint(), CProjectService::AddProjectView(), CProteinAlignText::AddProtText(), CCDSInfo::AddPStop(), CHandleRange::AddRange(), CBamFileRangeSet::AddRanges(), CPhrap_Read::AddReadLoc(), CEventLogService::AddRecord(), CRegionMap::AddRef(), CDataType::AddReference(), CPluginManager< TClass >::AddResolver(), CObjectList::AddRow(), CSplitter::AddRow(), CImportFeatTable::AddSeqAnnotToSeqEntry(), CBlastQueryFilteredFrames::AddSeqLoc(), CWriteDB_SequenceFile::AddSequence(), CBuildDatabase::AddSequences(), CScope_Impl::AddSharedBioseq(), CScope_Impl::AddSharedSeq_annot(), CScope_Impl::AddSharedSeq_entry(), CwxTableListCtrl::AddSorterIndex(), CSpecificHostModel::AddSpecHostNode(), ASNLexer::AddStringChar(), CAttribMenu::AddStringsReadOnly(), CMenuItem::AddSubItem(), AddSupport(), CSynonymsSet::AddSynonym(), CThreadPool_Impl::AddTask(), CWindowManager::AddToolBar(), CWindowManagerService::AddToolBarContext(), CWindowManagerService::AddToolBarFactory(), CUIToolRegistry::AddToolToMRU(), CBlobSplitterImpl::AddToSkeleton(), CViewManagerService::AddToWorkbench(), CTrackContainer::AddTrackProxy(), CTrackContainer::AddTracks(), CDataSource::AddTSE(), CHit::AddUpSubHits(), CTSE_ScopeInfo::AddUsedTSE(), CFeatureGenerator::SImplementation::AdjustAlignment(), CMostAffinityJob< TImpl >::Affinity(), AlignModelToSeqalign(), CTrackConfigManager::AlignTrackConfig(), CSeqDBAtlas::Alloc(), CObjectMemoryPoolChunk::Allocate(), CNCMMSizePool::AllocateBlock(), CBDB_BLobFile::Append(), CAmbiguousRegion::Append(), CObjectList::Append(), CUICommand::AppendMenuItem(), CUICommandRegistry::AppendMenuItem(), CHTML_table::AppendRow(), CUICommandRegistry::AppendTool(), CTaxNRCriteria::Apply(), CUICommandRegistry::ApplyAccelerators(), CChainerArgUtil::ArgsToChainer(), CBDB_BufferManager::ArrangePtrsPacked(), CFastaReader::AssembleSeq(), CChoiceTypeInfo::Assign(), CCharPtrFunctions< T >::Assign(), CSeqDB_BitSet::AssignBitRange(), CTL_Cmd::AssignCmdParam(), CChoiceTypeInfoFunctions::AssignDefault(), CTimeSpan::AssignFromSmartString(), CCustomizedFastaReader::AssignMolType(), CFastaReader::AssignMolType(), CTimeSpan::AsSmartString(), CDynamicCharArray::At(), CScope_Impl::AttachAnnot(), CVisibleRangeService::AttachClient(), CGBDocument::AttachDataLoader(), CScope_Impl::AttachEntry(), CGBDocument::AttachProjectItems(), CBlobSplitterImpl::AttachToSkeleton(), CDataSource_ScopeInfo::AttachTSE(), BASE64_Decode(), BASE64_Encode(), BDB_batch_delete_recs(), BDB_Compare(), BDB_CreateEnv(), BDB_FixedByteStringCompare(), BDB_GetUFieldIdx(), BDB_iterate_file(), SAnnotObject_Key::begin(), CObjectIStreamAsnBinary::BeginClass(), CObjectOStreamAsnBinary::BeginClass(), CObjectOStreamXml::BeginClassMember(), CIStreamContainerIterator::BeginElement(), CCgiResponse::BeginPart(), CDataSource_ScopeInfo::BestResolve(), CSQLITE3_Statement::Bind(), CBDB_File::BindData(), CBDB_File::BindKey(), Blast_GetSeqLocInfoVector(), Blast_Message2TSearchMessages(), BlastFormatter_PreFetchSequenceData(), BlastHitList2SeqAlign_OMF(), BLASTPrelminSearchHitListToStdSeg(), CCachedAssembly::Blob(), CBDB_Cache::BlobCheckIn(), CSelectionService::Broadcast(), CVisibleRangeService::BroadcastVisibleRange(), CGlBuffer20< T >::BufferSubData(), CGlBuffer11< T >::BufferSubData(), BuildAln(), TKmerMethods< TKmerCounts >::BuildCompressedTranslation(), CMacroBioData_SeqSetIter::BuildEditedObject(), BuildGFF3Gap(), CRegionMap::BumpClock(), C_xDriverMgr::C_xDriverMgr(), CScoringJob::Calculate(), CUpdateSeq_Input::CalculateAlignment(), CalculateFormattingParams(), CAlnVec::CalculateScore(), CQualityScoringMethod::CalculateScores(), CSimpleScoringMethod::CalculateScores(), CSNPScoringMethod::CalculateScores(), CMatrixScoringMethod::CalculateScores(), CalculateSeqBufferLength(), CChain::CalculateSupportAndWeightFromMembers(), CAlignMap::CAlignMap(), CAlignModel::CAlignModel(), CEUtilsApp::CallEGQuery(), CEUtilsApp::CallEHistory(), CEUtilsApp::CallEInfo(), CEUtilsApp::CallELink(), CEUtilsApp::CallEPost(), CEUtilsApp::CallESearch(), CEUtilsApp::CallESpell(), CEUtilsApp::CallESummary(), CAlnPos_CI::CAlnPos_CI(), CAlnSpanVertModel::CAlnSpanVertModel(), CContigAssembly::CAlnStats::CAlnStats(), CAlnStats< _TAlnIdVec >::CAlnStats(), CAlnVecRow::CAlnVecRow(), CSeq_loc_CI_Impl::CanBeBond(), CSeq_loc_CI_Impl::CanBePacked_int(), CSeq_loc_CI_Impl::CanBePacked_pnt(), impl::CBaseCmd::Cancel(), CProjectLoadingTask::CancelBackgrounded(), CAppJobTask::CancelBackgrounded(), CThreadPool_Impl::CancelTask(), CThreadPool_Impl::CancelTasks(), CAsnExporter::CanDo(), CWiggleExporter::CanDo(), CPhyExporter::CanDo(), CAlignTabExporter::CanDo(), CFastaExporter::CanDo(), CAgpExporter::CanDo(), CGffExporter::CanDo(), CGtfExporter::CanDo(), CFlatFileExporter::CanDo(), CGCAssemblyLoadManager::CanDo(), CProjectLoadManager::CanDo(), C5ColExporter::CanDo(), CNetBLASTUILoadManager::CanDo(), CBLASTToolManager::CanDo(), CTableFileLoadManager::CanDo(), CTextAlignLoaderManager::CanDo(), CVCFLoaderManager::CanDo(), CFASTAFormatLoadManager::CanDo(), CBedLoadManager::CanDo(), CAgpLoader::CanDo(), CWigLoadManager::CanDo(), CAlgoToolManagerBase::CanDo(), CGffLoadManager::CanDo(), CQualTableLoadManager::CanDo(), COpenViewManager::CanDo(), CFileLoadManager::CanDo(), CGenBankUILoadManager::CanDo(), CLBLASTUILoadManager::CanDo(), CBamUILoadManager::CanDo(), CWriteDB_IndexFile::CanFit(), CWriteDB_HeaderFile::CanFit(), CWriteDB_SequenceFile::CanFit(), CAnnotObject_Info::CAnnotObject_Info(), CAnnotObject_Ref::CAnnotObject_Ref(), CSeqMap::CanResolveRange(), CAppJobEventTranslator::CAppJobEventTranslator(), CArrayString< PREFIX >::CArrayString(), CAutoDefModifierCombo::CAutoDefModifierCombo(), CAutoDefSourceGroup::CAutoDefSourceGroup(), CBDB_Transaction::CBDB_Transaction(), CBioObjectId::CBioObjectId(), CBLAST_Dlg_Item::CBLAST_Dlg_Item(), CBlastDbDataLoader::CBlastDbDataLoader(), CBlastFormat::CBlastFormat(), CBlastRPSAuxInfo::CBlastRPSAuxInfo(), CBlobStorage_NetCache::CBlobStorage_NetCache(), CBlockingQueue< CRef< CStdRequest > >::CBlockingQueue(), CByteStreamBuf::CByteStreamBuf(), CCache< TKey, TValue, THandler, TLock, TSize >::CCache(), CCacheBlobStream::CCacheBlobStream(), CCachedSequence::CCachedSequence(), CCddBookRefToBvString(), CCDSProteinPanel::CCDSProteinPanel(), CChain::CChain(), CClientPseudoDataType::CClientPseudoDataType(), impl::CCmdBase::CCmdBase(), CCmdChangeSeqEntry::CCmdChangeSeqEntry(), CCmdLineBlastXMLReportData::CCmdLineBlastXMLReportData(), CConfig::CConfig(), CConn_Streambuf::CConn_Streambuf(), impl::CConnection::CConnection(), CCSRABlobId::CCSRABlobId(), CCSraDb_Impl::CCSraDb_Impl(), CDataLoaderFactory::CDataLoaderFactory(), CDBAPI_CacheIReader::CDBAPI_CacheIReader(), CDBL_Connection::CDBL_Connection(), CDensegGraphicDataSource::CDensegGraphicDataSource(), CDenseSegHit::CDenseSegHit(), CGeneModel::CdsInvariant(), CEditScript::CEditScript(), CEffectiveSearchSpaceCalculator::CEffectiveSearchSpaceCalculator(), CEffectiveSearchSpacesMemento::CEffectiveSearchSpacesMemento(), CEnumeratedTypeInfo::CEnumeratedTypeInfo(), CExpandItem::CExpandItem(), CFastaMapper::CFastaMapper(), CFeatureLoadingJob::CFeatureLoadingJob(), CFlatSeqLoc::CFlatSeqLoc(), CGBReleaseFile::CGBReleaseFile(), CGBReleaseFileImpl::CGBReleaseFileImpl(), CGenePanel::CGenePanel(), CGeneralScoreMatrix::CGeneralScoreMatrix(), CSeqMapSwitchPoint::ChangeSwitchPoint(), CAmbigDataBuilder::Check(), CDataType::Check(), CTLibContext::Check(), CTL_RowResult::Check(), db_map_base< K, T >::iterator_base::check_open_cursor(), CDBLibContext::CheckFunctCall(), CConnTest::CheckFWConnections(), CResultSet::CheckIdx(), CSeqDB_BitSet::CheckOrFindBit(), CSeqDBOIDList::CheckOrFindOID(), CValidError_bioseq::CheckSoureDescriptor(), CCacheWriter::CStoreBuffer::CheckSpace(), AbstractLexer::CheckSymbol(), CNCMMStats::ChunksChainFreed(), CInitMutex_Base::CInitMutex_Base(), CIntersectionGiList::CIntersectionGiList(), CIStreamContainerIterator::CIStreamContainerIterator(), CEnvironmentCleaner::Clean(), CAlignCollapser::CleanSelfTranscript(), CHttpCookies::Cleanup(), CleanVisString(), CleanVisStringJunk(), CLocalHookSetBase::Clear(), CCDSInfo::Clear5PrimeCdsLimit(), CSQLITE_Statement::ClearBindings(), CSeqDB_BitSet::ClearBit(), CSeq_annot_Info::ClearFeatIds(), CObjectList::ClearRows(), CRawSeqDBSource::ClearSequence(), CCDSInfo::Clip(), CGeneModel::Clip(), CChain::ClipChain(), CChain::ClipLowCoverageUTR(), CChain::ClipToCompleteAlignment(), CLocalDbAdapter::CLocalDbAdapter(), CLockVectorGuard< TLockVect >::CLockVectorGuard(), CNetService::Clone(), CTrackContainer::CloneTrack(), CArchiveZip::Close(), CGlPane::Close(), CNamespace::Close(), CWindowManagerService::CloseAllClients(), CWindowManagerService::CloseClient(), CWindowManagerService::CloseClients(), impl::CBaseCmd::CloseCursor(), CTL_CursorCmd::CloseForever(), CObjectOStreamXml::CloseTagStart(), CMasterContext::CMasterContext(), CMemberId::CMemberId(), CMessageSlotPopupWindow::CMessageSlotPopupWindow(), CModelExon::CModelExon(), CMostAffinityJob< TImpl >::CMostAffinityJob(), CNcbiResourceInfo::CNcbiResourceInfo(), CNCMMBlocksSet::CNCMMBlocksSet(), CNetBlastSubmittingJob::CNetBlastSubmittingJob(), CNetCacheAPICF::CNetCacheAPICF(), CNetScheduleAPICF::CNetScheduleAPICF(), NDirectNetStorageImpl::CObj::CObj(), pythonpp::CObject::CObject(), CObjectList::CObjectList(), CObjectLoadingTask::CObjectLoadingTask(), COffsetReadHook::COffsetReadHook(), CSeq_entry_EditHandle::CollapseSet(), CAlignCollapser::CollapsIdentical(), CollectAttributes(), CBam2Seq_graph::CollectCoverage(), CBlobSplitterImpl::CollectPieces(), TQueryMessages::Combine(), CGeneModel::CombineCdsInfo(), CombineCorrectionsAndIndels(), CSeq_loc_Conversion::CombineWith(), CCDSInfo::CombineWith(), CAlignRange< Position >::CombineWithAbutting(), CDense_seg::Compact(), CBDB_RawFile::CompactEx(), CTextseq_id::Compare(), CSpecificHostModel::Compare(), CBDB_FieldString::Compare(), CBDB_FieldStringCase::Compare(), CBDB_FieldLString::Compare(), CBDB_BufferManager::Compare(), compare_seqids(), CSeq_feat::CompareNonLocation(), CSeqManip::Complement(), CSeqportUtil_implementation::Complement(), CTL_Connection::CompleteBlobDescriptors(), CDiagHandler::ComposeMessage(), CompressNcbi2na(), SBDB_BvStore_Id< TBV >::ComputeBitCountMap(), CBlastPrelimSearch::ComputeBlastHSPResults(), RowScorer::ComputeBlockScores(), CClusterer::ComputeClusters(), CClusterer::ComputeClustersFromLinks(), CDistances::ComputeMatrix(), SNetServerImpl::Connect(), CFixGenericListCtrl::ConnectToControl(), SSeqIdRange::const_iterator::const_iterator(), CBDB_BufferManager::Construct(), CComponentSearchForm::ConstructQuery(), CCpgSearchForm::ConstructQuery(), CFeatureSearchForm::ConstructQuery(), CSequenceSearchForm::ConstructQuery(), COrfSearchForm::ConstructQuery(), CSeqScores::ConstructSequenceAndMaps(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Contains(), CHttpResponse::ContentStream(), CHttpRequest::ContentStream(), impl::CConnection::Context(), CSeqConvert_imp::Convert(), CSeq_loc_Conversion::Convert(), CSeq_loc_Conversion_Set::Convert(), Convert2Matrix(), CBadResiduesException::SBadResiduePositions::ConvertBadIndexesToString(), CSeq_loc_Conversion::ConvertBond(), CSeq_loc_Conversion_Set::ConvertBond(), CSeq_loc_Conversion::ConvertCdregion(), CSeq_loc_Conversion_Set::ConvertCdregion(), ConvertDendiagToPairwiseAln(), CSeq_loc_Conversion::ConvertEquiv(), CSeq_loc_Conversion_Set::ConvertEquiv(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion::ConvertMix(), CSeq_loc_Conversion_Set::ConvertMix(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), impl::ConvertN2A(), CSeq_loc_Conversion::ConvertPacked_int(), CSeq_loc_Conversion_Set::ConvertPacked_int(), CSeq_loc_Conversion::ConvertPacked_pnt(), CSeq_loc_Conversion_Set::ConvertPacked_pnt(), CSeq_loc_Conversion::ConvertPoint(), CSeq_loc_Conversion::ConvertRna(), CSeq_loc_Conversion_Set::ConvertRna(), ConvertSeqLocsToPairwiseAln(), CSeq_entry_EditHandle::ConvertSeqToSet(), CSeq_entry_EditHandle::ConvertSetToSeq(), CSeq_loc_Conversion::ConvertSimpleLoc(), copy_2bit(), copy_2bit_reverse(), copy_2bit_table(), copy_2bit_table_reverse(), copy_4bit(), copy_4bit_reverse(), copy_4bit_table(), copy_4bit_table_reverse(), copy_8bit(), copy_8bit_reverse(), copy_8bit_table(), copy_8bit_table_reverse(), CBlobSplitterImpl::CopyDescr(), CPhrap_Seq::CopyFrom(), CBDB_Field::CopyFrom(), CopyGraphData(), CBlobSplitterImpl::CopyHist(), CMemberInfoFunctions::CopyHookedMember(), CVariantInfoFunctions::CopyHookedVariant(), CMemberInfoFunctions::CopyMissingHookedMember(), CMemberInfoFunctions::CopyMissingOptionalMember(), CMemberInfoFunctions::CopyMissingParentClass(), CMemberInfoFunctions::CopyMissingSimpleMember(), CVariantInfoFunctions::CopyNonObjectVariant(), CVariantInfoFunctions::CopyObjectPointerVariant(), CBDB_BufferManager::CopyPackedFrom(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::CopySkeleton(), COStreamContainer::COStreamContainer(), CSeq_annot_SplitInfo::CountAnnotObjects(), CountQueryCoverage(), CThreadInPool_ForServer::CountSelf(), CThreadInPool< TRequest >::CountSelf(), NStr::CParse(), CArgDescriptions::CPrintUsage::CPrintUsage(), CProjectServiceTestTask::CProjectServiceTestTask(), CProjectTask::CProjectTask(), CProteinAlignText::CProteinAlignText(), CPsiBlastInputClustalW::CPsiBlastInputClustalW(), CPssmInputWithGapsInQuery::CPssmInputWithGapsInQuery(), CPssmInputWithNegativeFreqs::CPssmInputWithNegativeFreqs(), CPssmInputWithUnnormalizedFreqs::CPssmInputWithUnnormalizedFreqs(), CPssmInputWithZeroObservations::CPssmInputWithZeroObservations(), CPushback_Streambuf::CPushback_Streambuf(), CQueryFactoryInfo::CQueryFactoryInfo(), CQueue::CQueue(), CQuickAndDirtySamePointerGuard< T >::CQuickAndDirtySamePointerGuard(), CRasterizer< A >::CRasterizer(), python::CRealResultSet::CRealResultSet(), CMoreTableColsDlg::Create(), CBV_PoolBlockAlloc< BA, Lock >::CBlockFactory::Create(), CWriteDB_File::Create(), python::CDMLConnPool::Create(), CAnnotationASN1::CImplementationData::create_cdregion_feature(), CAnnotationASN1::CImplementationData::create_internal_feature(), CAnnotationASN1::CImplementationData::create_packed_int_seqloc(), CBlastDBAliasApp::CreateAliasFile(), CAlnMap::CreateAlignFromRange(), CreateAlignRow(), CreateAlignSetFromAnchoredAln(), CreateAnchoredAlnVec(), CBlastBioseqMaker::CreateBioseqFromId(), SCacheInfo::CreateCache(), CChainer::CChainerImpl::CreateChainsForPartialProteins(), CQualityScoringMethod::CreateColorTable(), CSimpleScoringMethod::CreateColorTable(), CColumnScoringMethod::CreateColorTable(), CMatrixScoringMethod::CreateColorTable(), CWriteDB_Impl::CreateColumn(), CSparseMultiDataSource::CreateConsensus(), CPhrap_Contig::CreateContig(), CScoringMethodsDlg::CreateControls(), CFixSpecificHostDlg::CreateControls(), CQualityScoringPanel::CreateControls(), CreateDense_diagFromAnchoredAln(), CreateDensegFromAnchoredAln(), CSeq_align::CreateDensegFromDisc(), CreateDensegFromPairwiseAln(), CreateEmptySeq_align_set(), CSetupFactory::CreateHspPipe(), CSetupFactory::CreateHspStream(), CSetupFactory::CreateHspWriter(), CDataLoaderFactory::CreateInstance(), CBlobStorageFactory::CreateInstance(), CAsnElementPrimitive::CreateItem(), CUICommandRegistry::CreateMenu(), CreateMenu(), CreateMenuItems(), CTaskTablePanel::CreateModel(), CUIToolRegistry::CreateMRUList(), CSequence::CreateMsa(), CProjectService::CreateNewWorkspace(), CSequenceOfTypeInfo::CreateNode(), CSQLITE_HandleFactory::CreateObject(), CGraphTrack::CreateOverlay(), CreatePackedsegFromAnchoredAln(), CreatePackedsegFromPairwiseAln(), CAlignCleanup::CreatePairwiseFromMultiple(), CGBDocument::CreateProjectScope(), CPhrap_Read::CreateRead(), CAlnMultiModel::CreateRows(), CSetupFactory::CreateScoreBlock(), CNetBLAST_DMSearchTool::CreateSearchForm(), CAlnVecRowHandle::CreateSegmentIterator(), CAlnVecGraphicDataSource::CreateSegmentIterator(), CSparseAln::CreateSegmentIterator(), CreateSplicedsegFromAnchoredAln(), python::CCallableStmtHelper::CreateStmt(), CBlastOptionsFactory::CreateTask(), CUIToolRegistry::CreateToolInstance(), CTrackConfigManager::CreateTrackConfig(), CSimpleProjectView::CreateView(), CViewManagerService::CreateViewInstance(), CValidateTableView::CreateViewWindow(), CSUCTableView::CreateViewWindow(), CEditingBtnsView::CreateViewWindow(), CSubPrepView::CreateViewWindow(), CCrossAlignView::CreateViewWindow(), CSeqTextView::CreateViewWindow(), CTableView::CreateViewWindow(), CAnnotCompareView::CreateViewWindow(), CSeqTreeView::CreateViewWindow(), CDotMatrixView::CreateViewWindow(), CMPCrossAlignView::CreateViewWindow(), CAlignSpanView::CreateViewWindow(), CViewGraphic::CreateViewWindow(), CPhyTreeView::CreateViewWindow(), CFeatTableView::CreateViewWindow(), CMultiAlignView::CreateViewWindow(), CAlnSummaryView::CreateViewWindow(), CSequinDesktopView::CreateViewWindow(), CSimpleProjectView::CreateViewWindow(), CTextView::CreateViewWindow(), CreateWholeSeqLocFromIds(), CReferenceItem::CReferenceItem(), CRemoteBlastDbDataLoader::CRemoteBlastDbDataLoader(), CResultSet::CResultSet(), CRgbaColor::CRgbaColor(), CSafeStaticLifeSpan::CSafeStaticLifeSpan(), CScope::CScope(), CScopeInfo_Base::CScopeInfo_Base(), CScoringJob::CScoringJob(), CBl2Seq::CSearchResultSet2TSeqAlignVector(), CSeq_align_Handle::CSeq_align_Handle(), CSeq_descr_CI::CSeq_descr_CI(), CSeq_descr_SplitInfo::CSeq_descr_SplitInfo(), CSeq_feat_Handle::CSeq_feat_Handle(), CSeq_graph_Handle::CSeq_graph_Handle(), CSeq_hist_SplitInfo::CSeq_hist_SplitInfo(), CSeq_id_Handle::CSeq_id_Handle(), CSeq_id_Info::CSeq_id_Info(), CSeq_id_Which_Tree::CSeq_id_Which_Tree(), CSeqDB_BitSet::CSeqDB_BitSet(), CSeqDB_ColumnReader::CSeqDB_ColumnReader(), CSeqDBAliasNode::CSeqDBAliasNode(), CSeqDBGiListSet::CSeqDBGiListSet(), CSeqDBImpl::CSeqDBImpl(), CSeqDBIntCache< TDeflineCacheItem >::CSeqDBIntCache(), CSeqDBMapStrategy::CSeqDBMapStrategy(), CSeqDBOIDList::CSeqDBOIDList(), CSeqDBTaxId::CSeqDBTaxId(), CSeqdesc_CI::CSeqdesc_CI(), CSeqLoc2BlastSeqLoc(), CSequenceAmbigTrimmer::CSequenceAmbigTrimmer(), CSimpleClassFactoryImpl< CReader, CCacheReader >::CSimpleClassFactoryImpl(), CSimpleGraphicDataSource::CSimpleGraphicDataSource(), CSnpBitfield1_2::CSnpBitfield1_2(), CSnpBitfield2::CSnpBitfield2(), CSNPSeqInfo::CSNPSeqInfo(), CSortableSeq_id::CSortableSeq_id(), CSQLITE_StatementLock::CSQLITE_StatementLock(), CStdSegHit::CStdSegHit(), CTableDataAlnSummary::CTableDataAlnSummary(), CTableDataSNP::CTableDataSNP(), CTaskCmdLineArgs::CTaskCmdLineArgs(), CThreadPool_Guard::CThreadPool_Guard(), CThreadPool_ServiceThread::CThreadPool_ServiceThread(), CThreadPool_Thread::CThreadPool_Thread(), CTime::CTime(), CTL_SendDataCmd::CTL_SendDataCmd(), CTooltipFrame::CTooltipFrame(), CTransmissionWriter::CTransmissionWriter(), CTSE_ScopeInfo::CTSE_ScopeInfo(), CUICommand::CUICommand(), CCDSInfo::Cut(), CVDBGraphDb_Impl::CVDBGraphDb_Impl(), CVersionInfo::CVersionInfo(), CVisRangeGlyph::CVisRangeGlyph(), CWindowManagerEvent::CWindowManagerEvent(), CWorkbench::CWorkbench(), CWriteDB_ColumnBuilder::CWriteDB_ColumnBuilder(), CWriteDB_File::CWriteDB_File(), CWriterByteSourceReader::CWriterByteSourceReader(), CWriterCopyByteSourceReader::CWriterCopyByteSourceReader(), CRgbaColor::Darken(), CTempString::data(), CRegionMap::Data(), CTextPanel::DataLoaded(), pythonpp::CExtObject< CStringType >::Declare(), pythonpp::CModuleExt::Declare(), pythonpp::CUserError< COperationalError, CDatabaseError >::Declare(), CCleanup::DecodeXMLMarkChanged(), CMemStore::Delete(), impl::CBaseCmd::Delete(), CArgDescriptions::Delete(), CObjectList::DeleteColumn(), CNCBlobVerManager::DeleteDeadVersion(), CRWLockHolder_Pool::DeleteHolder(), CSequenceOfTypeInfo::DeleteNode(), CObject::DeleteThis(), CNCMMSizePool_Getter::DeleteTlsObject(), CWindowManagerService::DeleteToolBarFactory(), CBioTreeForest< BioTree >::DeleteTree(), CNCBlobVerManager::DeleteVersion(), DensegConvert(), descendingLadderEpochRepeat(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::Deserialize(), python::CSelectConnPool::Destroy(), CGBDocument::DetachDataLoader(), CDataSource_ScopeInfo::DetachScope(), CDataLoader::DetailsToChoice(), CNcbiMatrix< T >::Diagonal(), CEventHandler::Dispatch(), CSeq_entry_Remove_EditCommand::Do(), CRemoveTSE_EditCommand::Do(), CBlastDBSeqId::do_copy(), CHTML_table::DoAppendChild(), CIntervalTree::DoDelete(), CBDB_MergeBlobWalkerAsync< BF >::DoFetch(), CIntervalTree::DoInsert(), CLockVectorGuard< TLockVect >::DoLock(), CMostAffinityJob< TImpl >::Done(), PT::CProjectFolder::DoNewFolder(), PT::CProjectItem::DoProperties(), PT::CProjectFolder::DoProperties(), PT::CDataLoader::DoRemove(), PT::CProjectItem::DoRemove(), PT::CProjectFolder::DoRemove(), CGCAssemblyLoadManager::DoTransition(), CProjectLoadManager::DoTransition(), CNGAlignTool::DoTransition(), CNetBLASTUILoadManager::DoTransition(), CRMLoader::DoTransition(), CASNFormatLoadManager::DoTransition(), CBLASTToolManager::DoTransition(), CTableFileLoadManager::DoTransition(), CTextAlignLoaderManager::DoTransition(), C5ColLoadManager::DoTransition(), CVCFLoaderManager::DoTransition(), CFASTAFormatLoadManager::DoTransition(), CAgpLoader::DoTransition(), CBedLoadManager::DoTransition(), CWigLoadManager::DoTransition(), CAlgoToolManagerBase::DoTransition(), CGffLoadManager::DoTransition(), CQualTableLoadManager::DoTransition(), COpenViewManager::DoTransition(), CProjectFormatLoadManager::DoTransition(), CFileLoadManager::DoTransition(), CWorkspaceFormatLoadManager::DoTransition(), CGenBankUILoadManager::DoTransition(), CLBLASTUILoadManager::DoTransition(), CBamUILoadManager::DoTransition(), CSequenceAmbigTrimmer::DoTrim(), CObjectList::_CColumn::DoubleVector(), CDelayBuffer::DoUpdate(), CSelectionHelper::Draw(), CGraphOverlay::Drop(), CBDB_Cache::DropBlob(), CBDB_Cache::DropBlobWithExpCheck(), CSeq_id_Which_Tree::DropInfo(), CDataSource::DropTSE(), CTSE_ScopeInfo::DropTSE_Lock(), CNCMMReserve::DumpChain(), CNCMMReserve::DumpChunks(), CAnnotCompareDS::DumpTextReport(), CBDB_File::DuplicateStructure(), CBDB_BufferManager::DuplicateStructureFrom(), CChainMembers::DuplicateUTR(), CProjectViewBase::eh_OnProjectChanged(), ElementsSum(), CCacheDemoApp::EmptyOnOverflowDemo(), SAnnotObject_Key::end(), CObjectOStream::ByteBlock::End(), CObjectOStream::CharBlock::End(), CObjectOStream::AsnIo::End(), CObjectIStream::ByteBlock::End(), CObjectIStream::CharBlock::End(), CObjectIStream::AsnIo::End(), CObjectIStreamXml::EndDelayBuffer(), TestUtil::EndianIndependentBufferHash(), PT::CProjectItem::EndLabelEdit(), PT::CProjectFolder::EndLabelEdit(), CCgiResponse::EndLastPart(), CCgiResponse::EndPart(), CGBSeqFormatter::EndSection(), CIStreamBuffer::EndSubSource(), CDockLayoutTree::CNode::EnforceChildOrder(), CNcbiTestTreeElement::EnsureDep(), CNcbiTestsTreeBuilder::EnsureDep(), SGridWorkerNodeImpl::EnterExclusiveMode(), IRegistry::EnumerateEntries(), IRegistry::EnumerateInSectionComments(), IRegistry::EnumerateSections(), CNcbiEnvRegMapper::EnvToReg(), CObjectOStreamXml::EolIfEmptyTag(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Erase(), CRangeMapBase< CRangeMapTraits< Position, Mapped > >::erase(), CTreeIterator::Erase(), CHttpResponse::ErrorStream(), CAgpConverter::ErrorStringToEnum(), CScannerFunctorAND::Eval(), CScannerFunctorOR::Eval(), CCurveBezier::EvalPos(), CCurveBezier::EvalTan(), CQueryFunction_BV_Logic< BV >::Evaluate(), CSGQueryFunctionValue::Evaluate(), CSGQueryFunctionLogic::Evaluate(), CQueryFunction_BV_In_Or< BV >::Evaluate(), CSGQueryFunctionCompare::Evaluate(), CMQueryFunctionValue::Evaluate(), CMQueryFunctionRTVar::Evaluate(), CBDB_Cache::EvaluateTimeLine(), CAsyncObjConvert::Execute(), CAsyncObjConvert2::Execute(), python::CStmtHelper::Execute(), python::CCallableStmtHelper::Execute(), CHttpRequest::Execute(), CEventHandler::CPostQueue::ExecuteFirstRequest(), CUndoManager::ExecuteUnlock(), CGroupMapWidget::ExpandGroup(), ExpandSupport(), CModelExon::Extend(), CGeneModel::Extend(), CGeneModel::ExtendLeft(), CGeneModel::ExtendRight(), CConnTest::ExtraCheckOnFailure(), CTar::Extract(), CPsiBlastArgs::ExtractAlgorithmOptions(), CIgBlastArgs::ExtractAlgorithmOptions(), CBlastDBExtractor::ExtractAsn1Bioseq(), ExtractBlast4Request(), CBlastDBExtractor::ExtractBlastName(), CBlastDBExtractor::ExtractCommonTaxonomicName(), CArchiveZip::ExtractEntryToCallback(), CArchiveZip::ExtractEntryToFileSystem(), CArchiveZip::ExtractEntryToMemory(), CBlastDBExtractor::ExtractLeafCommonTaxonomicNames(), CBlastDBExtractor::ExtractLeafScientificNames(), CBlastDBExtractor::ExtractLinksInteger(), CBlastDBExtractor::ExtractMembershipInteger(), CAnnotationASN1::ExtractModels(), CTimeLine< BV >::ExtractObjects(), ExtractPssmAncillaryData(), CBlastDBExtractor::ExtractScientificName(), CBlastDBExtractor::ExtractSuperKingdom(), CBDB_MergeBlobWalker< BF >::Fetch(), CBDB_MergeBlobWalkerAsync< BF >::Fetch(), CBDB_FileCursor::Fetch(), CBDB_LobFile::Fetch(), pythonpp::CErrorStackElem::Fetch(), db_map_base< K, T >::iterator_base::fetch_next(), db_map_base< K, T >::iterator_base::fetch_prev(), CBDB_FileCursor::FetchFirst(), CBlobMetaDB::FetchMeta(), CDataType::FileName(), CIStreamBuffer::FillBuffer(), CTaxIdHelper::FillControl(), CRgbaGradColorTable::FillGradient(), AbstractLexer::FillNextToken(), CAlignCollapser::FilterAlignments(), CArchiveZip::FinalizeMemory(), CNCBlobVerManager::FinalizeWriting(), CCgiCookies::Find(), NStr::Find(), CSeqDB_BasePath::FindBaseName(), CSeqDB_Path::FindBaseName(), CSeqDB_Path::FindBasePath(), CCyclicDepends::FindCyclesNew(), CIndexDeltaSumCache::FindDeltaSum(), CSeqDB_BasePath::FindDirName(), CSeqDB_Path::FindDirName(), FindFGapIntronNog(), CSeqDB_Path::FindFileName(), FindGeneticCode(), FindGoodParts(), CSeq_id_int_Tree::FindInfo(), CSeq_id_Gi_Tree::FindInfo(), CSeq_id_Textseq_Tree::FindInfo(), CSeq_id_Local_Tree::FindInfo(), CSeq_id_General_Tree::FindInfo(), CSeq_id_Giim_Tree::FindInfo(), CSeq_id_Patent_Tree::FindInfo(), CSeq_id_PDB_Tree::FindInfo(), CSeq_id_Textseq_Tree::FindMatch(), CItemsInfo::FindNextMandatory(), CEditScript::FindOffsetFromSeq1(), CEditScript::FindOffsetFromSeq2(), CAlignRangeCollExtender< TAlnRngColl >::FindOnSecond(), CChainer::CChainerImpl::FindOptimalChainForProtein(), CSeq_id_int_Tree::FindOrCreate(), CSeq_id_Gi_Tree::FindOrCreate(), CSeq_id_Textseq_Tree::FindOrCreate(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CSeq_id_Giim_Tree::FindOrCreate(), CSeq_id_Patent_Tree::FindOrCreate(), CSeq_id_PDB_Tree::FindOrCreate(), CSeq_loc_CI_Impl::SEquivSet::FindPartByElementIndex(), CNcbiApplication::FindProgramExecutablePath(), FindSection(), CChainer::FindSelenoproteinsClipProteinsToStartStop(), FindStartsStops(), CInternalStopFinder::FindStartStopRanges(), CProjectService::FindView(), CProjectService::FindViews(), ICitationBase::FixPages(), FlattenBioseqSet(), CBDB_ExtBlobStore< TBV >::Flush(), CBDB_CacheIWriter::Flush(), STzFormatCheck::fmt(), CSelectionControl::FocusItem(), CBDB_Env::ForceRemove(), CHookDataBase::ForgetLocalHook(), CReadObjectList::ForgetObjects(), CWriteObjectList::ForgetObjects(), CTSE_ScopeInfo::ForgetTSE_Lock(), CFlatGoQVal::Format(), FormatAsAsn(), CGBSeqFormatter::FormatDefline(), CGenbankFormatter::FormatFeature(), CGBSeqFormatter::FormatLocus(), CGBSeqFormatter::FormatReference(), CVecscreenRun::CFormatter::FormatResults(), CTextUtils::FormatSeparatedNumber(), CGBSeqFormatter::FormatSource(), CSparseKmerCounts::FractionCommonKmersDist(), CBinaryKmerCounts::FractionCommonKmersDist(), CSparseKmerCounts::FractionCommonKmersGlobalDist(), CBinaryKmerCounts::FractionCommonKmersGlobalDist(), CDistMethods::FractionIdentity(), FrAlignFNog1(), FrameNumber2NetworkFrame(), CSeqDBAtlas::Free(), CRegistryFile::FromConfigFile(), CSNPBlobId::FromSatString(), CSNPBlobId::FromString(), CDockLayoutTree::CNode::FromUserObject(), CGeneModel::FShiftedLen(), g_Diag_Use_RWLock(), g_RW_ResultToString(), g_UnpackInteger(), CNewCleanup_imp::GBQualBC(), CFlatFileGenerator::Generate(), CClientPseudoTypeStrings::GenerateClassCode(), CChoiceTypeStrings::GenerateClassCode(), CClassTypeStrings::GenerateClassCode(), CTraversalNode::GenerateCode(), NASNCacheFileName::GenerateLockfilePath(), CPluginManagerGetter< Interface >::Get(), CObjPool< CRWLockHolder, THolderPoolFactory >::Get(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Get(), CAnnotTypes_CI::Get(), CNetScheduleConfigLoader::Get(), CBlast4Field::Get(), CTreeIteratorTmpl< CTreeLevelIterator >::Get(), CLoadInfoMap< Key, Info >::Get(), CVDBObjectCacheBase::Get(), CWriteDB_PackedSemiTree::Iterator::Get(), CBDB_FieldInt8::Get(), CBDB_FieldUint8::Get(), CBDB_FieldInt4::Get(), CBDB_FieldInt2::Get(), CSDB_ConnectionParam::Get(), CBDB_FieldUint2::Get(), CBDB_FieldUChar::Get(), CBDB_FieldChar::Get(), CBDB_FieldUint4::Get(), CBDB_FieldFloat::Get(), CBDB_FieldDouble::Get(), CBDB_FieldFixedByteString::Get(), CBDB_FieldLString::Get(), CSeqDBAtlasHolder::Get(), CWGSSeqIterator::Get2na(), CWGSSeqIterator::Get4na(), Get_I_DriverContext(), CSparseKmerCounts::GetAALetter(), CBinaryKmerCounts::GetAALetter(), CContextTranslator::GetAbsoluteContext(), CBioseq_Handle::GetAccessSeq_id_Handle(), CBDB_Cache::GetAccessTime(), CDataSource::GetAccVers(), CDataLoader::GetAccVers(), CWindowManagerService::GetActiveClient(), CSeqDBAliasNode::GetAliasFileValues(), CSparseAlignment::GetAlignCollection(), CSparseAln::GetAlignCollection(), CHitMatrixDataSource::GetAlignedIdsForParams(), CCmdLineBlastXMLReportData::GetAlignment(), IScoringMethod::GetAlignmentTagByType(), CWindowManagerService::GetAllClients(), CDockContainer::GetAllClients(), CSNPDbFeatIterator::GetAllele(), SSNP_Info::GetAlleleStrIndex(), CAlnPos_CI::GetAlnPos(), CDensegGraphicDataSource::GetAlnPosFromSeqPos(), CSimpleGraphicDataSource::GetAlnPosFromSeqPos(), CSparseAln::GetAlnPosFromSeqPos(), SChunkTranslator::GetAlnPosFromSeqPos(), CAlnChunkSegment::GetAlnRange(), CDensegGraphicDataSource::GetAlnSeqString(), CSimpleGraphicDataSource::GetAlnSeqString(), CSparseAlignment::GetAlnSeqString(), CSparseAln::GetAlnSeqString(), CAnchoredAln::GetAnchorRow(), CGnomonEngine::GetAnnot(), CAnnotObject_Ref::GetAnnotObject_Info(), CLDS2_Database::GetAnnots(), CRemoteAppJobFactory::GetAppVersion(), CRemoteCgiJobFactory::GetAppVersion(), CScannerFunctorArgN::GetArg(), CScannerFunctorArgN::GetArgField(), CJson_ConstNode::GetArray(), pythonpp::CExtObject< CStringType >::GetAttrImpl(), CFileCode::GetBaseFileBaseName(), CTSE_Info_Object::GetBaseParent_Info(), CEUtils_Request::GetBaseURL(), CSparseAln::GetBaseWidth(), GetBestCdsForMrna(), GetBestGeneForCds(), GetBestGeneForMrna(), GetBestMrnaForCds(), CBlast4Field::GetBig_integer(), CTL_BCPInCmd::GetBind(), CPlaceId::GetBioseq_setId(), CHitMatrixDataSource::GetBioseqHandle(), CSparseAln::GetBioseqHandle(), CValidator::CCacheImpl::GetBioseqHandleFromLocation(), CPlaceId::GetBioseqId(), CTSE_ScopeInfo::GetBioseqInfo(), CTSE_ScopeInfo::GetBioseqLock(), CRemoteBlastDbAdapter::GetBioseqNoData(), CTSE_ScopeInfo::GetBioseqsIds(), CValidator::CCacheImpl::GetBioseqsOfFeatCache(), CSeqDB_BitSet::GetBit(), CBlastQueryVector::GetBlastSearchQuery(), CTL_Connection::GetBLKVersion(), CSeqDBColumn::GetBlob(), CSQLITE_Statement::GetBlob(), CDBAPI_Cache::GetBlobAccess(), CBDB_Cache::GetBlobAccess(), CLDS2_DataLoader::GetBlobById(), CGBDataLoader::GetBlobById(), CTSE_Split_Info::GetBlobId(), CTSE_Chunk_Info::GetBlobId(), CSNPSeqInfo::GetBlobId(), CTSE_ScopeInfo::GetBlobId(), CLDS2_Database::GetBlobInfo(), CBDB_ExtBlobMap::GetBlobLoc(), CTSE_ScopeInfo::GetBlobOrder(), CResultSet::GetBlobOStream(), CSQLITE3_Cache::GetBlobOwner(), CDBAPI_Cache::GetBlobOwner(), CBDB_Cache::GetBlobOwner(), CRemoteBlastDbDataLoader::GetBlobs(), CGBDataLoader::GetBlobs(), CDataSource::GetBlobs(), CLoadLockSetter::GetBlobState(), CTSE_Chunk_Info::GetBlobVersion(), CNCMMBlocksSet::GetBlock(), CSeq_loc_CI_Impl::GetBondBegin(), CSeq_loc_CI_Impl::GetBondEnd(), CBlast4Field::GetBoolean(), CDockLayoutTree::CNode::GetBranchIndex(), CBDB_RawFile::GetBtreeMinKeysPerPage(), CDB_String::GetBulkInsertionData(), CCgiApplicationCached::GetCacheStorage(), CODBC_CursorResult::GetCDBResult(), impl::CConnection::GetCDriverContext(), GetCdssForGene(), CSplitter::GetCell(), CNCMMChainsPool::GetChain(), CSQLITE_Statement::GetChangedRowsCount(), CCalcCharsOStream::GetCharCount(), CChecksum::GetChecksum(), CBlastDbDataLoader::GetChunk(), CLDS2_DataLoader::GetChunk(), CAnnotObject_Info::GetChunk_Info(), CRemoteBlastDbDataLoader::GetChunks(), CNCMMReserve::GetChunks(), CHandleRange::GetCircularRangeEnd(), CHandleRange::GetCircularRangeStart(), CDefaultWorkerNodeInitContext::GetCleanupEventSource(), CBlastAppArgs::GetClientId(), CDockContainer::GetClientsInWindow(), CDBL_Cmd::GetCmd(), CDBL_Result::GetCmd(), CDBL_CursorResult::GetCmd(), CTL_CursorResultExpl::GetCmd(), CAlignCollapser::GetCollapsedAlgnments(), GetCollectionSearchDirection(), CAnnotTypes_CI::GetCollector(), CResultSet::GetColNum(), CSeqTextConfig::GetColor(), CWidgetDisplayStyle::GetColor(), CRgbaGradColorTable::GetColor(), CTraceGraph::GetColorByValue(), CSimpleScoringMethod::GetColorForNoScore(), CQualityScoringMethod::GetColorForNoScore(), CColumnScoringMethod::GetColorForNoScore(), CColorTableMethod::GetColorForScore(), CQualityScoringMethod::GetColorForScore(), CSimpleScoringMethod::GetColorForScore(), CSGAlnQualityScore::GetColorForScore(), CColumnScoringMethod::GetColorForScore(), CTestSeqBasedMethod::GetColorForScore(), CMatrixScoringMethod::GetColorForScore(), CAlnMultiRenderer::GetColumn(), CTableImportDataSource::GetColumn(), CSeqDBVol::GetColumnBlob(), CSeqDBImpl::GetColumnBlob(), CObjectListTableModel::GetColumnFormat(), CSeqDBVol::GetColumnMetaData(), CSeqDBImpl::GetColumnMetaData(), CGroupTableModel::GetColumnName(), CFeatTableDS::GetColumnName(), CTextTableModel::GetColumnName(), CSQLITE_Statement::GetColumnName(), CResultSet::GetColumnNo(), CSQLITE_Statement::GetColumnsCount(), CObjectListTableModel::GetColumnType(), CObjectList::GetColumnType(), CFeatTableDS::GetColumnType(), CAlnMultiRenderer::GetColumnTypeByIndex(), CEditingBtnsView::GetCommandHandler(), CSubPrepView::GetCommandHandler(), CSeqTextView::GetCommandHandler(), CSeqTreeView::GetCommandHandler(), CTableView::GetCommandHandler(), CSequinDesktopView::GetCommandHandler(), CTextView::GetCommandHandler(), CProjectViewBase::GetCommandHandler(), CEventView::GetCommandHandler(), CBioseq_set_Handle::GetComplexityLevel(), CBioseq_Handle::GetComplexityLevel(), CMySQL_LangCmd::GetConnection(), CMySQL_RowResult::GetConnection(), CDBL_Result::GetConnection(), CTL_RowResult::GetConnection(), impl::CCmdBase::GetConnImpl(), CMemberInfoFunctions::GetConstDelayedMember(), CVariantInfoFunctions::GetConstDelayedVariant(), CScope_Impl::GetConstDS(), CVariantInfoFunctions::GetConstInlineVariant(), CVariantInfoFunctions::GetConstPointerVariant(), CMemberInfoFunctions::GetConstSimpleMember(), CVariantInfoFunctions::GetConstSubclassVariant(), AnnotObjTrait< CSeq_feat >::GetCont(), AnnotObjTrait< CSeq_align >::GetCont(), AnnotObjTrait< CSeq_graph >::GetCont(), CObjectIStreamXml::GetContainerElementTypeFamily(), CObjectOStreamXml::GetContainerElementTypeFamily(), CObjectIStreamXml::GetContainerElementTypeInfo(), CObjectOStreamXml::GetContainerElementTypeInfo(), CHttpFormData::GetContentTypeStr(), CContextTranslator::GetContextInChunk(), CPhrap_Sequence::GetContig(), CWGSFileInfo::SAccFileInfo::GetContigIterator(), CWGSFileInfo::GetContigIterator(), IObjDeMux< unsigned >::GetCoordinates(), CBDB_BlobDeMux::GetCoordinates(), CIdDeMux< TBV, TBVFact >::GetCoordinates(), CBDB_BlobDeMux_RoundRobin::GetCoordinates(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::GetCoordinates(), CSNPDbSeqIterator::GetCoverageAnnot(), CSNPDbSeqIterator::GetCoverageGraph(), ctlib::Command::GetCTLConn(), ctlib::Connection::GetCTLContext(), CTL_Connection::GetCTLibContext(), CBlastOptionsLocal::GetCullingLimit(), CGroupMapWidget::GetCurrentItem(), CProjectLoadManager::GetCurrentPanel(), CTime::GetCurrentTimeT(), CBLASTParams::GetCurrParams(), CNCBlobVerManager::GetCurVersion(), CBlast4Field::GetCutoff(), CImage::GetData(), CUpdateSeq_Dlg::GetData(), CAlnSpanVertModel::GetData(), CAlnTableDS::GetData(), CBDB_LobFile::GetData(), CNetCacheAPI::GetData(), CBDB_FieldString::GetDataLength(), CTSE_Split_Info::GetDataLoader(), CTSE_Info::GetDataSource(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::GetDb(), CLDS2_Manager::GetDbFile(), CDBL_Connection::GetDBLibCtx(), CDBL_CursorResult::GetDefineParams(), CODBC_CursorResult::GetDefineParams(), CMemberInfoFunctions::GetDelayedMember(), CVariantInfoFunctions::GetDelayedVariant(), CIndexDeltaSumCache::GetDeltaSum(), CInt4DeltaSumCache::GetDeltaSum4(), CInt8DeltaSumCache::GetDeltaSum8(), CSeq_entry_CI::GetDepth(), GetDiagErrCodeInfo(), GetDiagHandler(), CAlnStats< _TAlnIdVec >::GetDimForAln(), CIdDeMux< TBV, TBVFact >::GetDimVector(), CStatement::CStmtParamsMetaData::GetDirection(), CSeqDB::GetDiskUsage(), CSQLITE_Statement::GetDouble(), C_xDriverMgr::GetDriverContext(), CDbapiSampleApp::GetDriverName(), CTSE_ScopeInfo::GetDSInfo(), CSeq_loc_Conversion::GetDstPoint(), CScope_Impl::GetEditDataSource(), CScope_Impl::GetEditDS(), CScope_Impl::GetEditHandle(), CCmdLineBlastXMLReportData::GetEffectiveSearchSpace(), CEffectiveSearchSpaceCalculator::GetEffSearchSpace(), CEffectiveSearchSpaceCalculator::GetEffSearchSpaceForContext(), CEHistory_Request::GetEHistoryResult(), CEInfo_Request::GetEInfoResult(), CDiagHit::GetElem(), CDenseSegHit::GetElem(), CStdSegHit::GetElem(), CTypedArrayAdapter< IDataArray::eNumeric, int >::GetElem(), CSeq_loc_CI_Impl::SEquivSet::GetElementsCount(), CELink_Request::GetELinkResult(), CBioseqContext::GetEncode(), CArchiveZip::GetEntryInfo(), CEPost_Request::GetEPostResult(), CESearch_Request::GetESearchResult(), CESpell_Request::GetESpellResult(), CESummary_Request::GetESummaryResult(), CFeatureGenerator::SImplementation::GetExonStructure(), GetExtensionAsInterface(), CDocsumTableModel::GetExtraColumnName(), CObjectListSelTM::GetExtraColumnName(), CNetBlastJobTableModel::GetExtraColumnName(), CDocsumTableModel::GetExtraValueAt(), CObjectListSelTM::GetExtraValueAt(), CNetBlastJobTableModel::GetExtraValueAt(), CObjectListTableModel::GetExtraValueAt(), CSeqGraphicConfig::GetFeatParams(), CSettingsSet::GetFeatReadKey(), CValidator::CCacheImpl::GetFeatStrKeyToFeats(), CBioTree< TBioNode >::CBioNode::GetFeature(), CFeatTableDS::GetFeatureRow(), CBDB_File::GetField(), CGuiRegistryUtil::GetFieldAt(), CWorkbench::GetFileArtProvider(), SFileDlgData::GetFilename(), SWFileDlgData::GetFilename(), CFilterSet2::GetFilter(), CSNPBlobId::GetFilterIndex(), CBlastOptionsLocal::GetFilterString(), CCompoundID::GetFirst(), CPairwise_CI::GetFirstRange(), CScorematPssmConverter::GetFreqRatios(), CSeqTableLocColumns::GetFrom(), CConnTest::GetFWConnections(), CGapAnalysis::GetGapLengthSummary(), CParse::GetGenes(), CSeq_id_Mapper::GetGiHandle(), CDataSource::GetGis(), CDataLoader::GetGis(), CGraphContainer::GetGraph(), CUnixFeature::GetGroupGIDByName(), CUnixFeature::GetGroupNameByGID(), CMasterSeqSegments::GetHandle(), CHttpHeaders::GetHeaderName(), CHistParamsManager::GetHistParams(), CHitList::GetHit(), CHistogramGlyph::GetHTMLActiveAreas(), CBioseqSeqInfoSrc::GetId(), CSeqTableLocColumns::GetId(), GetId(), CSeqTableLocColumns::GetIdHandle(), CValidator::CCacheImpl::GetIdToBioseq(), CIdDeMux< TBV, TBVFact >::GetIdVector(), CGroupTableModel::GetImageAliasAt(), CTextTableModel::GetImageAliasAt(), CClassTypeInfo::GetImplicitMember(), CIndexedOctetStrings::GetIndex(), CSeq_annot_SNP_Info::GetIndex(), CSeq_annot_Info::GetInfo(), CSeq_annot_SNP_Info::GetInfo(), CVariantInfoFunctions::GetInlineVariant(), CSeq_id_Mapper::GetInstance(), CSQLITE_Statement::GetInt(), CSQLITE_Statement::GetInt8(), CBlast4Field::GetInteger(), CBlast4Field::GetIntegerList(), CPrimitiveTypeInfo::GetIntegerTypeInfo(), CDB_Result::GetIResult(), CBlobStreamHelper::GetIStream(), CDBL_BlobResult::GetItem(), CDBL_Result::GetItemInternal(), CTL_RowResult::GetItemInternal(), CGroupMapWidget::GetItemLabel(), CAnnotTypes_CI::GetIterator(), CNetScheduleGetJobImpl< TImpl >::GetJobImpl(), CHitList::GetKeepHit(), SAnnotObjectsIndex::GetKey(), CAnnotObject_Info::GetKey(), CTrackConfigManager::GetKnownAnnots(), CXmlNodeObjectLabelHandler::GetLabel(), CLabel::GetLabel(), ICitationBase::GetLabel(), CHitMatrixDataSource::GetLabel(), CSourceModParser::GetLabel(), CUserFeatHandler::GetLabel(), CSeq_annotHandler::GetLabel(), CDataSource::GetLabels(), CDataLoader::GetLabels(), CQueryDataPerChunk::GetLastChunk(), CSQLITE_Statement::GetLastInsertedRowid(), CBDB_FileCursor::GetLastMultiFetchData(), CBDB_FileCursor::GetLastMultiFetchDataLen(), CPriorityNode::GetLeaf(), CGraphTrack::GetLegend(), CFIntron::Getlen(), CVecscreenRun::GetList(), CInfoCache< KeyType, DataType >::GetLoaded(), CSeq_entry_Info::GetLoadedAnnot(), CBlastDbDataLoader::GetLoaderNameFromArgs(), CInfoCache< KeyType, DataType >::GetLoadLock(), CSeqTableLocColumns::GetLoc(), CBDB_BlobMetaContainer::GetLoc(), python::CDMLConnPool::GetLocalStmt(), CAnnotObject_Info::GetLocsTypes(), CBDB_FieldLString::GetLString(), CProjectView::GetMainObject(), CMPCrossAlignView::GetMainObject(), CNCMMSizePool_Getter::GetMainPool(), CSeqDB_ColumnEntry::GetMap(), CMappedGraph::GetMappedGraphRanges(), CMappedGraph::GetMappedGraphTotalRange(), CAnnotMapping_Info::GetMappedSeq_align(), CAnnotMapping_Info::GetMappedSeq_feat(), CAnnotMapping_Info::GetMappedSeq_id(), CAnnotMapping_Info::GetMappedSeq_loc(), CAnnotMapping_Info::GetMappedSeq_loc_Conv(), CAnnotObject_Info::GetMaps(), CSeqDBGiMask::GetMaskData(), CBlastQueryVector::GetMaskedRegions(), CCmdLineBlastXMLReportData::GetMaskLocations(), CRemoteBlast::GetMasks(), CCSraAlignIterator::GetMatchAlign(), CDataSource::GetMatches(), CBlast4Field::GetMatrix(), CTraceData::GetMax(), CStatement::CStmtParamsMetaData::GetMaxSize(), CChecksum::GetMD5Digest(), CWindowManagerService::GetMenu(), CWindowManager::GetMenu(), CMergeBitsetBlob< BV >::GetMergeBuffer(), CDictionaryUtil::GetMetaphone(), CMasterSeqSegments::GetMinusStrand(), CDataType::GetModule(), CModuleContainer::GetModuleContainer(), GetMrnasForGene(), CUIToolRegistry::GetMRUToolNames(), impl::CConnection::GetMsgHandlers(), CSNPBlobId::GetNAIndex(), CAnnotName::GetName(), CStatement::CStmtParamsMetaData::GetName(), CDBServiceMapperTraits< T >::GetName(), CGBDataLoader::GetNamedAnnotAccessions(), CFileCode::GetNamespace(), CSNPBlobId::GetNAVersion(), CSeqDBIdSet::GetNegativeList(), GetNetBlastJobDescription(), CFastaBioseqSource::GetNext(), CTar::GetNextEntryInfo(), CIntervalTree::GetNextRootKey(), CPsiBlastInputData::GetNumAlignedSequences(), CArchiveZip::GetNumEntries(), CObjMgrFree_LocalQueryData::GetNumQueries(), CObjMgr_LocalQueryData::GetNumQueries(), CJson_ConstNode::GetObject(), impl::CConnection::GetOpeningMsgHandlers(), CImportStrategy::GetOptionsBuilder(), CAutoDefModifierCombo::GetOrgMod(), CCreateFeat::GetOriginalFeat(), CAlign_CI::GetOriginalSeq_align(), CBlobStreamHelper::GetOStream(), COpenViewManager::GetOutputIndices(), CStdCmdLineArgs::GetOutputStream(), CHandleRange::GetOverlappingRange(), CPhrap_Seq::GetPaddedPos(), CHMMParameters::SDetails::GetParameter(), CGBDataLoader::GetParamsSubnode(), CSeq_loc_CI_Impl::SEquivSet::GetPartEndOffset(), CSeq_loc_CI_Impl::SEquivSet::GetPartsCount(), CSeq_loc_CI_Impl::SEquivSet::GetPartStartOffset(), CDbapiDriverSampleApp::GetPassword(), CDbapiSampleApp::GetPassword(), CWinMaskerFileStorage::GetPath(), CSeqDB_Path::GetPathS(), CCurveBezier::GetPoint(), CCurveCubic::GetPoint(), CVariantInfoFunctions::GetPointerVariant(), CServer_ConnectionPool::GetPollAndTimerVec(), CSeqDBIdSet::GetPositiveList(), CSequence::GetPrintableLetter(), DynProgProb::getProb(), NWinHook::CTaskManager::GetProcess(), CCreateFeat::GetProductId(), CBLASTParams::GetProgramLabel(), CGBProjectHandle::GetProject(), CProjectLoadOptionPanel::GetProjectFilenames(), CWGSFileInfo::SAccFileInfo::GetProteinIterator(), CWGSFileInfo::GetProteinIterator(), pythonpp::CUserError< COperationalError, CDatabaseError >::GetPyException(), SSNP_Info::GetQualityCodesOsIndex(), SSNP_Info::GetQualityCodesStrIndex(), CCmdLineBlastXMLReportData::GetQuery(), CQueryDataPerChunk::GetQueryLength(), CBlast4Field::GetQueryMask(), CBlastQueryVector::GetQuerySeqLoc(), CAlnChunkSegment::GetRange(), CSeqTableLocColumns::GetRange(), CSeq_data_SplitInfo::GetRange(), CHit::GetRangeFromSeq1(), CHit::GetRangeFromSeq2(), CHitMatrixPane::GetRangeSelection(), CRateMonitor::GetRate(), CSeqDBVol::GetRawSeqAndAmbig(), CPhrap_Sequence::GetRead(), CTransmissionReader::GetReader(), CBDB_Cache::GetReadStream(), CBlast4Field::GetReal(), CBDB_RawFile::GetRecLen(), CEventLogService::GetRecord(), CHitMatrixRenderer::GetRect(), CUndoManager::GetRedoLabel(), CAccessionItem::GetRegion(), CSeqDBRawFile::GetRegion(), CSeqDBAtlas::GetRegion(), CRegistryFile::GetRegistry(), CWorkbench::GetRegistrySectionPath(), CSeqFeatData::GetRegulatoryClass(), CDeadline::GetRemainingTime(), CBlastOptions::GetRemoteProgramAndService_Blast3(), CDiagContextThreadData::GetRequestContext(), CScorematPssmConverter::GetResidueFrequencies(), CAlnMap::GetResidueIndexMap(), CEGQuery_Request::GetResult(), CTL_Cmd::GetResult(), CResultSet::GetResultType(), GetReverseComplement(), CNetBlastJobDescriptor::GetRID(), SAlignment_Segment::GetRow(), CAlnMultiModel::GetRow(), CAnnotCompareDS::GetRow(), CLayout::GetRow(), CSpliced_exon::GetRowSeq_range(), CWGSFileInfo::SAccFileInfo::GetScaffoldIterator(), CWGSFileInfo::GetScaffoldIterator(), CDataLoadingAppJob::GetScope(), CAnnotTypes_CI::GetScope(), CCmdLineBlastXMLReportData::GetScope(), CBlastQueryVector::GetScope(), CScope_Impl::GetScope(), CMacroBioData_SeqSetIter::GetScopedObject(), CTSE_ScopeInfo::GetScopeLock(), CGnomonEngine::GetScore(), CEditScript::GetScore(), CHitMatrixDataSource::GetScoreRange(), CScoreCache::GetScores(), CScorematPssmConverter::GetScores(), CDiagHit::GetScoreValue(), CDenseSegHit::GetScoreValue(), CStdSegHit::GetScoreValue(), CPairwise_CI::GetSecondRange(), CPairwise_CI::GetSegType(), CAlnMultiWidget::GetSelectedIds(), CSelectionControl::GetSelectedIndex(), CSelectionControl::GetSelectedIndexes(), CBamRefSequencesPanel::GetSelectedReferenceSeqIds(), CAlnTableWidget::GetSelection(), CAlnSpanWidget::GetSelection(), CSeqTextView::GetSelection(), CCrossAlignView::GetSelection(), CAlignSpanView::GetSelection(), CSeqVectorCache::GetSeq(), CAnnotObject_Info::GetSeq_annot_Info(), CAnnotObject_Ref::GetSeq_annot_SNP_Info(), CAlnReader::GetSeqAlign(), CSparseAln::GetSeqAlnRange(), CSparseAln::GetSeqAlnStart(), CSparseAln::GetSeqAlnStop(), CMultiSeqInfo::GetSeqBlk(), CSeqVector_CI::GetSeqData(), CSeqDBVol::GetSeqData(), CCachedSeqDataForRemote::GetSeqDataChunk(), CAlnReader::GetSeqEntry(), CBioObjectId::GetSeqId(), CSparseAln::GetSeqId(), CSNPBlobId::GetSeqId(), CRemoteBlastDbAdapter::GetSeqIDs(), CAlnStats< _TAlnIdVec >::GetSeqIdsForAln(), CSNPBlobId::GetSeqIndex(), CSNPFileInfo::GetSeqInfo(), CSimpleGraphicDataSource::GetSeqLength(), CRemoteBlastDbAdapter::GetSeqLength(), CSeqDBVol::GetSeqLengthApprox(), CSeqDBVol::GetSeqLengthExact(), CSeqDBVol::GetSeqLengthProt(), CBioseq_Info::GetSeqMap(), CAlnPos_CI::GetSeqPos(), CDensegGraphicDataSource::GetSeqPosFromAlnPos(), CSimpleGraphicDataSource::GetSeqPosFromAlnPos(), CSparseAln::GetSeqPosFromAlnPos(), SChunkTranslator::GetSeqPosFromAlnPos(), CSimpleGraphicDataSource::GetSeqPosFromSeqPos(), CSparseAln::GetSeqRange(), CSparseAln::GetSeqStart(), CSparseAln::GetSeqStop(), CDensegGraphicDataSource::GetSeqString(), CSimpleGraphicDataSource::GetSeqString(), CSparseAln::GetSeqString(), CAnnotObject_Ref::GetSeqTableInfo(), CLocalBlastDbAdapter::GetSequence(), CRemoteBlastDbAdapter::GetSequence(), GetSequence_OMF(), CRemoteBlastDbAdapter::GetSequenceBatch(), CDataLoader::GetSequenceHashes(), GetSequenceLengthAndId(), CBlastDbDataLoader::GetSequenceLengths(), CDataSource::GetSequenceLengths(), CDataLoader::GetSequenceLengths(), GetSequenceProtein(), GetSequenceSingleNucleotideStrand(), CDataSource::GetSequenceStates(), CDataLoader::GetSequenceStates(), CBlastDbDataLoader::GetSequenceTypes(), CDataSource::GetSequenceTypes(), CDataLoader::GetSequenceTypes(), CDbapiDriverSampleApp::GetServerName(), CDbapiSampleApp::GetServerName(), CCgiRequest::GetSession(), CBioObjectId::GetSetId(), CAllOtherFeaturesTrackFactory::GetSettings(), CDataSource::GetSharedTSE(), CMemberInfoFunctions::GetSimpleMember(), CViewManagerService::GetSingletonView(), CTSE_Split_Info::GetSkeletonChunk(), CAnnotObject_Ref::GetSNP_Info(), CAutoDefSourceGroup::GetSourceDescription(), CDataValue::GetSourceFileName(), CTSE_Chunk_Info::GetSplitInfo(), CTSE_Info::GetSplitInfo(), CLoadLockBlob::GetSplitInfo(), CLoadLockSetter::GetSplitInfo(), CTSE_Split_Info::GetSplitVersion(), CObjectStack::GetStackTraceASN(), CBDB_Cache::GetStatistics(), CBlastSearchTask::GetStatusText(), CSeqTableLocColumns::GetStrand(), CBlast4Field::GetStrandType(), CEUtils_Request::GetStream(), CLightString::GetString(), CVariant::GetString(), CBlast4Field::GetString(), CSQLITE_Statement::GetString(), CCommentItem::GetStringForMolinfo(), CCommentItem::GetStringForOpticalMap(), GetStringOfFeatQual(), GetStringOfSourceQual(), CVariantInfoFunctions::GetSubclassVariant(), CBlastDatabaseArgs::GetSubjects(), CAutoDefModifierCombo::GetSubSource(), CScope_Impl::GetSynonyms(), CProjectLoadManager::GetTask(), CFileLoadManager::GetTask(), CBlastDbDataLoader::GetTaxIds(), CDataSource::GetTaxIds(), CDataLoader::GetTaxIds(), CReportObject::GetTextObjectDescription(), CDockLayoutTree::CNode::GetTheOnlyChild(), CBlastQuerySourceOM::GetTitle(), CSeqDBColumn::GetTitle(), CUIToolRegistry::GetToolNames(), CGraphContainer::GetTooltip(), CLinkedFeatsGroup::GetTooltip(), CHitMatrixRenderer::GetTooltip(), CResultSet::GetTotalColumns(), CStatement::CStmtParamsMetaData::GetTotalColumns(), CGen_code_table_imp::GetTransTable(), CPriorityNode::GetTree(), CTSE_Info_Object::GetTSE_Info(), CDataSource::GetTSE_LoadLock(), CLoadLockBlob::GetTSE_LoadLock(), CDataSource::GetTSE_LoadLockIfLoaded(), CDataSource_ScopeInfo::GetTSE_Lock(), CScope_Impl::GetTSESetWithAnnots(), CDataSource::GetTSESetWithBioseqAnnots(), CAlnChunkSegment::GetType(), CStatement::CStmtParamsMetaData::GetType(), CSeqTableInfo::GetType(), pythonpp::CExtObject< CStringType >::GetType(), CBDB_FC_Condition::GetUnassignedField(), IStickyTooltipHandlerHost::GetUnderlyingFrame(), CUndoManager::GetUndoLabel(), CBioObjectId::GetUniqNumber(), CDbapiDriverSampleApp::GetUserName(), CDbapiSampleApp::GetUserName(), CUnixFeature::GetUserNameByUID(), CUnixFeature::GetUserUIDByName(), CFeatConfigValues< V >::GetValue(), CSpecificHostModel::GetValue(), CJson_ConstNode::GetValue(), CSeqTableReader::GetValue(), CObjectListTableModel::GetValueAt(), CEventViewModel::GetValueAt(), CTaskViewModel::GetValueAt(), CAlnTableDS::GetValueAt(), CAlnSpanVertModel::GetValueAt(), CGroupTableModel::GetValueAt(), CFeatTableDS::GetValueAt(), CTextTableModel::GetValueAt(), CTraceData::GetValues(), CDataTypeModule::GetVar(), CSeq_id_Textseq_Info::TKey::GetVersion(), CGBProject::GetViewSettings(), CSeqDB_ColumnEntry::GetVolumeIndex(), CFIntron::GetW1len(), CFIntron::GetW2len(), CScorematPssmConverter::GetWeightedResidueFrequencies(), CAlnMap::GetWidth(), CSeqTextView::GetWindow(), CCrossAlignView::GetWindow(), CSeqTreeView::GetWindow(), CAnnotCompareView::GetWindow(), CDotMatrixView::GetWindow(), CMPCrossAlignView::GetWindow(), CAlignSpanView::GetWindow(), CViewGraphic::GetWindow(), CPhyTreeView::GetWindow(), CFeatTableView::GetWindow(), CMultiAlignView::GetWindow(), CSequinDesktopView::GetWindow(), CSimpleProjectView::GetWindow(), CTextView::GetWindow(), CMemberInfoFunctions::GetWithSetFlagMember(), CProjectLoadOptionPanel::GetWorkspaceFilename(), CTransmissionWriter::GetWriter(), CBDB_Cache::GetWriteStream(), CGeneModel::GoodEnoughToBeAnnotation(), SCigarAlignment::GuessFormat(), CAgpconvertApplication::CCustomErrorHandler::HandleError(), CDBAPI_Cache::HasBlobs(), CSeqDBIsam::HashToOids(), CQueryImpl::HasMoreResultSets(), CSeqMap::HasZeroGapAt(), CCacheDemoApp::HeapCacheDemo(), CPhyloTreePane::HMGH_UpdateLimits(), CSeqDBLockHold::HoldRegion(), CConnTest::HttpOkay(), CNcbiMatrix< T >::Identity(), CSeqDBIsam::IdsToOids(), CSeqDBIsam::IdToOid(), CBDB_FC_Condition::IncFieldsAssigned(), CSeqDBMemLease::IncrementRefCnt(), CSeqScores::Init(), CResultSet::Init(), CNSeq::Init(), CSparseMultiDataSource::Init(), CDiagHitElement::Init(), CScoreMethodsDlg::Init(), CNetBlastJobDescriptor::Init(), CTraceData::Init(), CLocationPanel::Init(), CInDelInfo::Init(), CTextTableModel::Init(), SNetServiceImpl::Init(), SChunkTranslator::Init(), CProjectTask::Init_OpenProjects(), CProjectTask::Init_OpenWorkspace(), CSGAlignmentDS::InitAlignScoreCache(), SBDB_CacheUnitStatistics::InitHistorgam(), PT::CProjectItem::Initialize(), impl::CCachedRowInfo::Initialize(), CCacheWriter::InitializeCache(), CCacheReader::InitializeCache(), CThread::InitializeMainThreadId(), CSetupFactory::InitializeMegablastDbIndex(), InitializeRemoteBlast(), InitializeSubject(), CBDB_FileCursor::InitMultiFetch(), CWindowManagerService::InitService(), InitSplicedsegFromPairwiseAln(), CTableViewWithTextViewNav::InitView(), CSeqTextView::InitView(), CProjectView::InitView(), CTableView::InitView(), CEditingBtnsView::InitView(), CSeqTreeView::InitView(), CSubPrepView::InitView(), CMPCrossAlignView::InitView(), CViewGraphic::InitView(), CPhyTreeView::InitView(), CMultiAlignView::InitView(), CSequinDesktopView::InitView(), CSimpleProjectView::InitView(), CTextView::InitView(), CSNPTableView::InitView(), CRegionMap::InRange(), CRawScoreVector< Key, Score >::insert(), CMemStore::Insert(), CLinkedMultisetBase< Mapped::key_type >::insertAfter(), CSeriesBase::InsertArray(), CPriority_I::InsertBefore(), CAlnMultiRenderer::InsertColumn(), CMultAlign::InsertDashesInReads(), CSequence::InsertGaps(), CAlignMap::InsertIndelRangesForInterval(), CSelListModelImpl< Item >::InsertItems(), CChainMembers::InsertMember(), CAlignMap::InsertOneToOneRange(), CSeqMap::InsertSegmentGap(), CMenuItem::InsertSubItem(), CSplitter::InsertToCell(), CLinkedMultisetBase< Mapped::key_type >::insertToStart(), CSeqScores::IntergenicScore(), CRgbaColor::Interpolate(), CNetScheduleJobReader::InterruptReading(), CCddInputData::CHit::IntersectWith(), CObjectList::_CColumn::IntVector(), CCDSInfo::Invariant(), CProcess::IsAlive(), CGene::IsAlternative(), CBDB_FieldString::IsBlank(), CGeneModel::isCompatible(), CDatabase::IsConnected(), CPairwise_CI::IsDirect(), CWindowManagerService::IsDragging(), CBDB_FieldString::IsEmpty(), CSpecificHostModel::IsEnabled(), CDockManager::IsFloating(), CClassTypeInfo::IsImplicitNonEmpty(), CDockManager::IsInMainTab(), CInfoCache< KeyType, DataType >::IsLoaded(), CLoadLockBlob::IsLoadedChunk(), isLogarithmic(), CAnnotMapping_Info::IsMapped(), CAnnotMapping_Info::IsMappedPoint(), CSparseAln::IsNegativeStrand(), CBLASTParams::IsNucDatabase(), CBLASTParams::IsNucInput(), CBDB_BufferManager::IsNull(), CTreeNode< TValue, TKeyGetter >::IsParent(), CSparseAln::IsPositiveStrand(), CBlastBioseqMaker::IsProtein(), CAlnMultiModel::IsRowSelected(), CAlnMultiModel::IsRowVisible(), CGBProject::IsSetViewSettings(), CTime::IsValid(), ILocalQueryData::IsValidQuery(), CHttpCookie::IsValidValue(), CBDB_Env::JoinEnv(), NStr::Justify(), CProcess::Kill(), CProcess::KillGroupById(), CGridGlobals::KillNode(), CAlignRowGraphCont::Layout(), CFeatureGraph::Layout(), SGridWorkerNodeImpl::LeaveExclusiveMode(), CChainer::CChainerImpl::LeftRight(), CRgbaColor::Lighten(), CTree::ListTreeLeaves(), CStringHistory::Load(), CMetaRegistry::Load(), CColumnScoringMethod::Load(), CTSE_Chunk_Info::Load(), CCSRARefSeqInfo::LoadAnnotAlignChunk(), CAlnMrgApp::LoadBlastDb(), CId1ReaderBase::LoadBlob(), CWGSFileInfo::LoadBlob(), CId2ReaderBase::LoadBlob(), CReader::LoadBlob(), CProcessor_AnnotInfo::LoadBlob(), CId2ReaderBase::LoadBlobs(), CReader::LoadBlobs(), CId1ReaderBase::LoadChunk(), CCacheReader::LoadChunk(), CId2ReaderBase::LoadChunks(), CAnnotWriteConfig::LoadConfig(), CSGAlignmentDS::LoadCoverageGraph(), CTraceDataProxy::LoadData(), CSUCRefreshCntrl::CSUCRefreshCntrlHelper::LoadData(), CGBDocument::LoadFile(), CBDB_RangeMap< TBV >::LoadFreeList(), CId1Reader::LoadGiBlob_ids(), CPubseqReader::LoadGiHash(), CId1Reader::LoadGiSeq_ids(), CPubseqReader::LoadGiSeq_ids(), CWindowManagerService::LoadLayout(), CBDB_MatrixBvStore< TBV, TM >::LoadMatrixDescriptions(), SBatchSubmitRecord::LoadNextRecord(), CProjectTask::LoadProjects(), CCSRARefSeqInfo::LoadRanges(), CCSRAFileInfo::LoadReadsChunk(), CCSRARefSeqInfo::LoadRefSeqChunk(), CPubseqReader::LoadSeq_idAccVer(), CPubseqReader::LoadSeq_idBlob_ids(), CReader::LoadSeq_idTaxId(), CReader::LoadSequenceLength(), CReader::LoadSequenceType(), CWinMaskerFileStorage::LoadSettings(), CUIDataSourceService::LoadSettings(), CSelectionPanel::LoadSettings(), CProjectService::LoadSettings(), CUIToolRegistry::LoadSettings(), CNetBLASTUIDataSource::LoadSettings(), CEventTablePanel::LoadSettings(), CPackString::Locate(), CSNPDb_Impl::SGraphTableCursor::Locate(), CMiniMutex::Lock(), CLocksMonitor::SLocks::Locked(), CTSE_ScopeInfo::SUnloadedInfo::LockTSE(), CSeqDBIntCache< TDeflineCacheItem >::Lookup(), COrgRefCache::LookupAndAdd(), DTDLexer::LookupString(), CChainer::CChainerImpl::LRIinit(), CMainLoopThread::Main(), CThreadInPool< TRequest >::Main(), CAsyncDiagThread::Main(), CSeq_loc_CI_Impl::MakeBondB(), CHitList::MakeCanonical(), CChainer::CChainerImpl::MakeChains(), MakeCompartment(), CGlTexture::MakeCurrent(), python::CConnection::MakeDBConnection(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::MakeDbFileName(), MakeDriverContext(), CEditScript::MakeEditScript(), CWig2tableApplication::MakeGraph(), CBlobSplitterImpl::MakeID2Chunk(), MakeMaskingBioseq(), CAliToSeq_align::MakeSeq_align(), CBlobSplitterImpl::MakeSeq_annot(), CAlignModel::MakeSeqAlign(), CLocalDbAdapter::MakeSeqInfoSrc(), CLocalDbAdapter::MakeSeqSrc(), MakeSplicedSeg(), MakeString(), CSeqGraphicConfigPanel::MakeWidgets(), CMappingRange::Map_Pos(), CMappingRange::Map_Strand(), MapAlignsToOrigContig(), CRegionMap::MapFile(), CCDSInfo::MapFromOrigToEdited(), CGnomonAnnotator_Base::MapModelsToEditedContig(), CGnomonAnnotator_Base::MapModelsToOrigContig(), CGnomonAnnotator_Base::MapOneModelToEditedContig(), MapOneModelToOrigContig(), CAlignMap::MapRangeAtoB(), CNCMMSlab::MarkChainFree(), CNCMMSlab::MarkChainOccupied(), BlockModel::mask(), CSelectionEvent::Match(), CRegionMap::MatchAndUse(), CSeq_annot_Info::MatchBitFilter(), CSelectionEvent::MatchIdWithId(), CHitList::MatchOverlappingSubHits(), CProteinAlignText::MatchText(), ICitationBase::MaybeAddSpace(), CCacheDemoApp::MemoryCacheDemo(), Merge(), CFeatureGenerator::SImplementation::MergeSeq_locs(), CPhyloTreePane::MMHH_GetScale(), CAnnotationASN1::CImplementationData::model2spliced_seq_align(), CwxTableListCtrl::MoveColumn(), CTrackContainer::MoveDown(), CTreeNode< TValue, TKeyGetter >::MoveSubnodes(), CWindowManagerService::MoveToFloatingFrame(), CDockManager::MoveToFloatingFrame(), CDockManager::MoveToMainTab(), python::CStmtHelper::MoveToNextRS(), CGraphOverlay::MoveTrackOut(), CTrackContainer::MoveUp(), CMainFrame::MSWWindowProc(), CSeqTreePane::MZHH_GetScale(), CGlPaneWidgetChildDemo::MZHH_GetScale(), CHitMatrixPane::MZHH_GetScale(), CPhyloTreePane::MZHH_GetScale(), CCrossAlnPane::MZHH_GetScale(), CAlnMultiPane::MZHH_GetScale(), CSeqGraphicPane::MZHH_GetScale(), CHostEntryPointImpl< TClassFactory >::NCBI_EntryPointImpl(), NcbiGetline(), NcbiOpenURL(), NcbiStreamToString(), NeedFullFeature(), CBLASTParams::NeedsDbGeneticCode(), CBLASTParams::NeedsQueryGeneticCode(), CBLASTParams::NeedsThreshold(), CRsitesGlyph::NeedTooltip(), CAlignedFeatureGraph::NeedTooltip(), NetworkProgram2BlastProgramType(), CDiscrepancyContext::NewFeatOrDescObj(), CDiscrepancyContext::NewFeatOrDescOrSubmitBlockObj(), CMostAffinityJob< TImpl >::Next(), CTreeIteratorTmpl< CTreeLevelIterator >::Next(), SJsonObjectKeyIterator::Next(), SJsonObjectElementOrderIterator::Next(), SJsonArrayIterator::Next(), SFlattenIterator::Next(), CPrefetchTokenOld_Impl::NextBioseqHandle(), CPrefetchTokenOld::NextBioseqHandle(), Nlm_rule_line(), Nlm_stream2text(), Nlm_StrLower(), Nlm_StrUpper(), CDirEntry::NormalizePath(), ICitationBase::NoteSup(), SGridWorkerNodeImpl::OfflineRun(), CStd_seg::OffsetRow(), CDense_diag::OffsetRow(), ON_EVENT(), ON_MESSAGE(), CSeqGraphicWidget::OnAddTrack(), CDataTrack::OnAJNotification(), CSearchToolBase::OnAJNotification(), CScoreCache::OnAJNotification(), CFeatureGraph::OnAJNotification(), CDataTrack::OnAJProgress(), CMultiAlignView::OnAlnWidgetSelChanged(), CProjectLoadingTask::OnAppJobNotification(), CAppJobTask::OnAppJobNotification(), CPhyloForce::OnAppJobNotification(), CAlnVecMultiDataSource::OnAppJobNotification(), CSparseMultiDataSource::OnAppJobNotification(), CQueryParsePanel::OnAppJobNotification(), CProjectLoadingTask::OnAppJobProgress(), CAppJobTask::OnAppJobProgress(), CPhyloForce::OnAppJobProgress(), CQualityScoringPanel::OnApply(), CPhyTreeView::OnBioTreeChanged(), CTableSortMultiChoice::OnBrowseBtn(), CMultiFileInput::OnBrowseBtn(), CBLASTSearchOptionsPanel::OnBrowseDatabases(), CTaskTablePanel::OnCancel(), CTrackCreatorUI::OnCancelClick(), CWindowManager::OnCaptionPanelCommand(), CFixGenericListCtrl::OnChildFocus(), CSeqGraphicWidget::OnCloneTrack(), CDockPanel::OnCloseButtonClick(), CWindowManager::OnCloseClientsRequestEvent(), CDockManager::OnCloseDockable(), CProjectTreePanel::OnContextMenu(), CTextItemPanel::OnContextMenu(), CSeqTextWidget::OnCopySelection(), CwxMainFrame::OnCreateGroupMapWidgetClick(), CwxMainFrame::OnCreateMapControlClick(), CwxMainFrame::OnCreateMapControlItems(), CwxMainFrame::OnCreateTableControlClick(), CwxMainFrame::OnCreateTableControlItems(), CProjectView::OnDecoratePopupMenu(), CEventTablePanel::OnDetails(), CTaskTablePanel::OnDetails(), CMinPanelContainer::OnDockPanelCommand(), CDockManager::OnDrag(), CAlnMultiWidget::OnDSChanged(), CDockManager::OnEndDrag(), CEventHandler::OnEvent(), CGrid::OnFilterColumns(), CDockManager::OnFloatingFrameActivateEvent(), CFileLoadManager::OnFormatChanged(), CRemoteAppBaseListener::OnGridWorkerStart(), CNetScheduleServerListener::OnInit(), CtRNAProductPanel::OnInitiatorSelected(), CSmartFileTextToolbar::OnJobNotification(), CTextDataSource::OnJobNotification(), CTableDataSNP::OnJobNotification(), CAppJobEventTranslator::OnJobStateChanged(), CAlnMultiHeaderHandler::OnLeftDown(), CSeqMarkHandler::OnLeftDown(), CStickyTooltipHandler::OnLinkClicked(), CDataMiningPanel::OnMenuEvent(), CAlnMultiHeaderHandler::OnMotion(), CDockContainer::OnMouseMove(), CMinimapHandler::OnMouseWheel(), CProjectTreePanel::OnNewFolder(), CSniffReader::OnObjectFoundPost(), CProjectTreePanel::OnPaste(), CWindowManager::OnPostCommand(), CNetCacheServerListener::OnPreInit(), CSearchToolBase::OnProgress(), CPhyTreeView::OnProjectChanged(), CMultiAlignView::OnProjectChanged(), CProjectTreePanel::OnProperties(), CSeqGraphicWidget::OnRemoveTrack(), CSeqGraphicWidget::OnRenameTrack(), CFrameworkDemoGUI::OnRestoreLayoutClick(), CMinPanelContainer::OnRestoreWindow(), CEditMacroDlg::OnRunClick(), CFilterColumnsDlg::OnSelectBtnClick(), CSelectionPanel::OnSelServiceStateChange(), CAlnMultiWidget::OnSetAsDefaultMethod(), CAlnSpanWidget::OnSettings(), CAlnMultiWidget::OnShowMethodDlg(), CProjectView::OnShowPopupMenu(), CDockContainer::OnTabClosePressed(), CDockNotebook::OnTabDragMotion(), CCompositeAppTask::OnTaskEvent(), CDockContainer::OnUpdateTabOrder(), CWindowManager::OnUpdateWindowCommand_Client(), CViewGraphic::OnWidgetDataChanged(), CProjectTreeView::OnWidgetSelChanged(), CSeqDBRawFile::Open(), CGlPane::Open(), ctlib::Command::Open(), CObjectIStream::Open(), CPipeHandle::Open(), CBDB_ExtBlobStore< TBV >::Open(), CBDB_Cache::Open(), CCacheWriter::OpenBlobStream(), impl::CBaseCmd::OpenCursor(), CObjectIStream::OpenFromBuffer(), CObjectOStreamXml::OpenTagEndBack(), CAppDialogs::OpenViewlDialog(), CBDB_FieldFixedByteString::operator const char *(), CBDB_FieldString::operator const char *(), CObject::operator delete(), CObject::operator new(), CNCMMSlab::operator new(), CNCMMBlocksSet::operator new(), CNCMMBigBlockSet::operator new(), CReaderAllocatedConnection::operator TConn(), CPrelimSearchRunner::operator()(), STreeNodeMapper::operator()(), CCacheElement_Less< TCacheElementPtr >::operator()(), LessThan::operator()(), CImage::operator()(), CPhyTreeCalc::CDistMatrix::operator()(), CNcbiMatrix< T >::operator()(), CAlnSeqIdsExtract< TAlnSeqId, TIdConverter >::operator()(), IDBServiceMapper::SDereferenceLess::operator()(), CConstRefCSeqId_LessThan::operator()(), CSGQueryNodePreprocessor::operator()(), FSaveSplitterLayout::operator()(), CAnnotObjectType_Less::operator()(), SSerialObjectLessThan< T >::operator()(), CScannerEvaluateFunc::operator()(), CQueryTreePrintFunc::operator()(), CSeq_loc_CI_Impl::PByLevel::operator()(), CSeqDBAtlas::RegionMapLess::operator()(), CGather_Iter::operator*(), CSparseIterator::operator*(), SSeqDB_SeqSrc_Data::operator*(), CAlnVecIterator::operator*(), PT::CChildIterator::operator*(), CSparse_CI::operator*(), CSeq_annot_CI::operator*(), CSeqdesc_CI::operator*(), CDenseg_CI::operator*(), CAnnot_CI::operator*(), CPriority_I::operator*(), CBasicManifest_CI< TString >::operator*(), CStreamLineReader::operator*(), CAlign_CI::operator*(), operator*(), CMemoryLineReader::operator*(), CObjPoolGuard< TObjPool >::operator*(), CBufferedLineReader::operator*(), CNADocSumIterator::operator*(), CCacheBlobStream::operator*(), operator*=(), operator+(), CAlnPos_CI::operator++(), CGather_Iter::operator++(), CSparseIterator::operator++(), CWigBufferedLineReader::operator++(), CAlnVecIterator::operator++(), CAnnot_CI::operator++(), CSeq_annot_CI::operator++(), CSeqdesc_CI::operator++(), CPriority_I::operator++(), CBasicManifest_CI< TString >::operator++(), CPairwise_CI::operator++(), CBufferedLineReader::operator++(), CNADocSumIterator::operator++(), CWGSSeqIterator::SWGSContigGapInfo::operator++(), operator+=(), operator-(), CAlnPos_CI::operator--(), CAnnot_CI::operator--(), operator-=(), CSparseIterator::operator->(), SSeqDB_SeqSrc_Data::operator->(), CAlnVecIterator::operator->(), CSparse_CI::operator->(), CSeq_annot_CI::operator->(), CSeqdesc_CI::operator->(), CDenseg_CI::operator->(), CAnnot_CI::operator->(), CBasicManifest_CI< TString >::operator->(), CObjPoolGuard< TObjPool >::operator->(), CNADocSumIterator::operator->(), CSeqMapSwitchPoint::operator<(), operator<<(), CSeq_descr_CI::operator=(), CSeqdesc_CI::operator=(), CSeqConvert_imp::CPacker::SArrangement::operator=(), CRangeMapIterator< Traits >::operator==(), CNcbiMatrix< T >::operator[](), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::operator[](), CSimpleBufferT< char >::operator[](), CGlBuffer20< T >::operator[](), CGlBuffer11< T >::operator[](), SSparseIndex::Optimize(), CTSE_Handle::OrderedBefore(), CSeq_annot_Handle::OrderedBefore(), CAgpConverter::OutputFlagStringToEnum(), CCgiObuffer::overflow(), CConn_Streambuf::overflow(), CRWStreambuf::overflow(), CSeqportUtil_implementation::Pack(), CSeqConvert_imp::CPacker::Pack(), CBDB_BufferManager::Pack(), SIDPackingBuffer::PackCompoundID(), PairTreeTraceNode(), CSeq_annot_SNP_Info_Reader::ParseAnnot(), ParseAttributes(), CNetServProtoParserBase::ParseCommand(), CFastaReader::ParseDataLine(), CFastaReader::ParseDefLine(), CFastaReader::ParseGapLine(), CSeq_id::ParseIDs(), ParseMoleculeTypeString(), CLDS2_ObjectParser::ParseNext(), ParseVersionString(), CWGSResolver_Ids::ParseWGSPrefix(), CFeatureFilter::Pass(), PT::CProjectFolder::Paste(), CSequenceUpdater::Patch(), CStreamLineReader::PeekChar(), CMemoryLineReader::PeekChar(), CBufferedLineReader::PeekChar(), CIStreamBuffer::PeekFindChar(), CCgiEntryReader::PendingCount(), CStringReader::PendingCount(), CTarReader::PendingCount(), CSeqDBIsam::PigToOid(), CStickyTooltipHandler::PinUnpinned(), CPipe::Poll(), CSeqDBAliasStack::Pop(), impl::CConnection::PopMsgHandler(), SSeqMapSelector::PopResolve(), NWinHook::CExeModuleInstance::PopulateModules(), NWinHook::CTaskManager::PopulateProcess(), CEventHandler::Post(), CFrameworkDemoGUI::PostCreateWindow(), CGnomonAnnotator::Predict(), CDataSource::Prefetch(), SNetServiceIterator_Weighted::Prev(), CMaskWriterBlastDbMaskInfo::Print(), CBlastFormatUtil::PrintAsciiPssm(), CBlastFormatterApp::PrintFormattedOutput(), printGFF3(), CAlnMapPrinter::PrintNumRow(), CBlastFormat::PrintOneResultSet(), CBlastFormat::PrintPhiResult(), PrintSAM(), PrintSAMHeader(), PrintTabular(), CObjectOStreamXml::PrintTagName(), CPrintJobInfo::PrintXput(), CObjectsSniffer::Probe(), CCddInputData::Process(), CPsiBlastInputData::Process(), CProcessor_ExtAnnot::Process(), CZipDecompressor::Process(), CSplitCacheApp::ProcessBlob(), CCgiContext::ProcessCORSRequest(), CSplitCacheApp::ProcessEntry(), CDockPanel::ProcessEvent(), CWindowManager::ProcessEvent(), CID2WGSProcessor_Impl::ProcessGetChunks(), CCdsForMrnaPlugin::processMainLoop(), ProductToSource(), ProgramNameToEnum(), CGlPane::Project(), CGlPane::ProjectEx(), CGlPane::ProjectX(), CGlPane::ProjectY(), CPromote::PromoteCdregion(), CPromote::PromoteFeatures(), CPromote::PromotePub(), CPromote::PromoteRna(), CSequence::PropagateGaps(), PsiBlastAddAncillaryPssmData(), PsiBlastComputePssmFromAlignment(), PsiBlastComputePssmScores(), PsiBlastSetupScoreBlock(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::push_back(), impl::CConnection::PushMsgHandler(), SSeqMapSelector::PushResolve(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Put(), CResourcePool_Base< string, CNoLock, CResoursePool_NewClassFactory< string > >::Put(), CNCMMChainsPool::PutChain(), CIdDeMux< TBV, TBVFact >::PutDimVector(), CBDB_PropertyDictionary< PropKey, PropValue >::PutKey(), CBDB_BlobDictionary< Key >::PutKey(), CPsiBlastValidate::QueryFactory(), CWindowManagerService::RaiseFloatingWindowsInZOrder(), CCgiEntryReader::Read(), CResultSet::Read(), CBDB_BlobDictionary< Key >::Read(), CSeq_annot_SNP_Info_Reader::Read(), CGFFReader::Read(), CNlmZipReader::Read(), CNamedPipeHandle::Read(), CStringReader::Read(), CPipeHandle::Read(), CDBAPI_CacheIReader::Read(), CPipe::Read(), CBGZFStream::Read(), SBamAlignInfo::Read(), CBDB_Cache::Read(), CSQLITE_Blob::Read(), CPhrapReader::Read(), CTarReader::Read(), CSeqDBAliasSets::ReadAliasFile(), CPhrap_Contig::ReadBaseQualities(), CBDB_File::ReadCursor(), CPhrap_Seq::ReadData(), CVariantInfoFunctions::ReadDelayedVariant(), CObjectIStreamXml::ReadEnum(), readGFF3(), readGFF3Gap(), CMemberInfoFunctions::ReadHookedMember(), CVariantInfoFunctions::ReadHookedVariant(), SBDB_BvStore_Id< TBV >::ReadIds(), CVariantInfoFunctions::ReadInlineVariant(), CNetServerMultilineCmdOutput::ReadLine(), CJsonOverUTTPReader::ReadMessage(), CMemberInfoFunctions::ReadMissingHookedMember(), CMemberInfoFunctions::ReadMissingOptionalMember(), CMemberInfoFunctions::ReadMissingParentClass(), CMemberInfoFunctions::ReadMissingSimpleMember(), CMemberInfoFunctions::ReadMissingWithSetFlagMember(), CObjectIStreamXml::ReadName(), SNetScheduleJobReaderImpl::ReadNextJob(), CNetScheduleJobReader::ReadNextJob(), CLocalFileRestorer::ReadObjectFromFile(), CVariantInfoFunctions::ReadObjectPointerVariant(), SCfgReader< TDestType, TSrcType >::ReadOnce(), CMemberInfoFunctions::ReadParentClass(), CVariantInfoFunctions::ReadPointerVariant(), CUTTPReader::ReadRawData(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::ReadRealloc(), CSequenceOfTypeInfoFunctions::ReadSequence(), CFeature_table_reader::ReadSequinFeatureTables(), CMemberInfoFunctions::ReadSimpleMember(), CVariantInfoFunctions::ReadSubclassVariant(), CPhrap_Read::ReadTag(), CPhrap_Contig::ReadTag(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::ReadVector(), CBDB_BvStore< TBV >::ReadVector(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::ReadVectorById(), CMemberInfoFunctions::ReadWithDefaultMemberX(), CMemberInfoFunctions::ReadWithSetFlagMember(), CPhyTreeView::RebuildObjectIndex(), CGeneModel::RecalculateLimits(), CStickyTooltipHandler::ReCreate(), CNcbiApplogApp::Redirect(), CUndoManager::Redo(), CWindowManagerService::RefreshClient(), CObjectConverter::Register(), CWindowManagerService::RegisterActiveClient(), CUICommandRegistry::RegisterCommand(), CAppJobDispatcher::RegisterEngine(), RegisterEntryPoint(), CSeqDBAtlas::RegisterExternal(), CViewManagerService::RegisterFactory(), CLayoutTrack::RegisterIconImage(), CCachedSequence::RegisterIds(), CWriteObjectList::RegisterObject(), CWorkbench::RegisterService(), CUIToolRegistry::RegisterTemplateTool(), CUIToolRegistry::RegisterTool(), CLDS2_Manager::RegisterUrlHandler(), CLDS2_DataLoader::RegisterUrlHandler(), CObjectIStreamXml::RejectedName(), CRelation::RelationFromUserObject(), CReaderAllocatedConnection::Release(), CObjectManager::ReleaseDataSource(), CInitMutexPool::ReleaseMutex(), python::CStmtHelper::ReleaseStmt(), python::CCallableStmtHelper::ReleaseStmt(), CTSE_ScopeInfo::ReleaseUsedTSEs(), CInterfaceObjectLocker< IAlignRow >::Relock(), CLinkReduce< TBV, TMapFunc1, TMapFunc2 >::Remap(), CCDSInfo::Remap(), CStd_seg::RemapToLoc(), RemapToQueryLoc(), CFileObsolete::Remove(), CDockManager::Remove(), SIdAnnotPieces::Remove(), CSeq_annot_Info::Remove(), SGridWorkerNodeImpl::SJobsInProgress::Remove(), CDir::Remove(), CLinkedMultisetBase< Mapped::key_type >::removeAfter(), CProjectService::RemoveAllProjectViews(), CBioseq_Base_Info::RemoveAnnot(), CTSE_ScopeInfo::RemoveAnnot(), CDockLayoutTree::CNode::RemoveChild(), CSplitter::RemoveChild(), CMinPanelContainer::RemoveClient(), CDockPanel::RemoveClient(), CNcbiMatrix< T >::RemoveCol(), CMenuService::RemoveContributor(), CDataMiningService::RemoveContributor(), CDemoHandler_EmptyOnOverflow::RemoveElement(), CBioseq_set_Info::RemoveEntry(), CTSE_ScopeInfo::RemoveEntry(), CGeneModel::RemoveExtraFShifts(), CSeq_annot_Info::RemoveFeatId(), CAsyncDiagHandler::RemoveFromDiag(), CDataSource_ScopeInfo::RemoveFromHistory(), CScope_Impl::RemoveFromHistory(), CLinkedMultisetBase< Mapped::key_type >::removeFromStart(), CViewManagerService::RemoveFromWorkbench(), CBioseq_ScopeInfo::RemoveId(), CScopeInfo_Base::RemoveInfoLock(), CAlignCollapser::RemoveNotSupportedIntronsFromTranscript(), CProjectService::RemoveProjectView(), CDense_seg::RemovePureGapSegs(), CSeqDBAtlas::RemoveRegionFlusher(), CNcbiMatrix< T >::RemoveRow(), CSeqMap::RemoveSegment(), CWindowManagerService::RemoveToolBarContext(), CScope_Impl::RemoveTopLevelSeqEntry(), CBioTreeForest< BioTree >::RemoveTree(), CDockContainer::RemoveWindow(), CBDB_RawFile::Rename(), CWriteDB_File::RenameSingle(), CWriteDB_Volume::RenameSingle(), CHitMatrixSeqGraph::Render(), CSequenceTickGraph::Render(), CPieGraph::Render(), CComboChart::Render(), CAlnMultiHeader::Render(), CScatterGraph::Render(), CGraphDotMarker::RenderMarker(), CSeqGraphicPane::RenderPdf(), CAsnElementBlockStart::RenderValue(), CAsnElementPrimitive::RenderValue(), CAsnElementBlockCollapsed::RenderValue(), CAsnOctetStringBlock::RenderValue(), CBDB_RawFile::Reopen(), CSeq_annot_Info::Replace(), CDockLayoutTree::CNode::ReplaceChild(), CGBDocument::ReplaceGiSeqIds(), CTSE_ScopeInfo::ReplaceTSE(), ReplaceVisibleChar(), CThreadPool_Impl::RequestExclusiveExecution(), CPhyloTreeDataSource::ReRootMidpoint(), CDistMethods::RerootTree(), SAnnotObjectsIndex::ReserveMapSize(), CUIToolRegistry::Reset(), CTSE_LoadLock::Reset(), CSparseKmerCounts::Reset(), CRandom::Reset(), CTreeIteratorTmpl< CTreeLevelIterator >::Reset(), CBinaryKmerCounts::Reset(), CUTTPWriter::Reset(), CSQLITE_Statement::Reset(), CSNPDbPageIterator::Reset(), CSNPDbGraphIterator::Reset(), CBioseq_Base_Info::ResetAnnot(), CLZOBuffer::ResetBuffer(), CIStreamBuffer::ResetBufferLock(), CBLASTParams::ResetCurrParams(), CTSE_ScopeInfo::ResetEntry(), CHookDataBase::ResetGlobalHook(), CLocalHookSetBase::ResetHook(), CBioseq_ScopeInfo::ResetId(), CSeq_loc_Conversion::ResetKeepPartial(), CHookDataBase::ResetLocalHook(), CMenuService::ResetMenuBar(), ResetSeqEntryProcessing(), CTSE_ScopeInfo::ResetTSE_Lock(), DTDElement::ResetType(), CSimpleBufferT< char >::resize(), CScannerFunctorArgN::ResizeVectors(), CPluginManager_DllResolver::Resolve(), SRelLoc::Resolve(), CID2SNPProcessor_Impl::ResolveAcc(), CID2WGSProcessor_Impl::ResolveAcc(), CGBDataLoader::ResolveConflict(), CPluginManager_DllResolver::ResolveFile(), CGeneFinder::ResolveGeneXref(), pythonpp::CErrorStackElem::Restore(), CLocalFileRestorer::RestoreFile(), RestoreModelAttributes(), RestoreModelFromInternalGnomonFeature(), RestoreModelFromPublicMrnaFeature(), RestoreModelMethod(), RestoreModelReadingFrame(), CSortedSeq_ids::RestoreOrder(), CChain::RestoreReasonableConfirmedStart(), CTSE_ScopeInfo::RestoreReplacedTSE(), CFrameworkDemoGUI::RestoreWindowLayout(), CMySQL_LangCmd::Result(), CRegionMap::RetRef(), CSeqDBAtlas::RetRegion(), CObjPool< CRWLockHolder, THolderPoolFactory >::Return(), CSeqManip::Reverse(), CSeqportUtil_implementation::Reverse(), CSeqManip::ReverseComplement(), CSeqportUtil_implementation::ReverseComplement(), CChainer::CChainerImpl::RightLeft(), CNewCleanup_imp::RnarefBC(), CAutoTrans::Rollback(), CFileDBEngine::RollbackTransaction(), CRMBlastnApp::Run(), CSampleBasicApplication::Run(), CAppTask::Run(), CVecScreenApp::Run(), CBlastnApp::Run(), CBlastpApp::Run(), CBlastxApp::Run(), CTblastnApp::Run(), CTblastxApp::Run(), CIgBlastnApp::Run(), CIgBlastpApp::Run(), CRPSBlastApp::Run(), CRPSTBlastnApp::Run(), CComponentIDToolApp::Run(), CProjectLoadingTask::Run(), CPsiBlastApp::Run(), CDeltaBlastApp::Run(), CMultiApplication::Run(), CBlastTracebackSearch::Run(), CBlastPrelimSearch::Run(), CDBLBClientApp::Run(), CPsiBlastImpl::Run(), CProjectServiceTestJob::Run(), CAppJobTask::Run(), CLocalBlast::Run(), CMergeVolumes::Run(), CMagicBlastApp::Run(), CSeedTopApp::Run(), CEditAppTask::Run(), CCompositeAppTask::Run(), CCgiApplication::Run(), CDemoApp::Run(), CDeltaBlast::Run(), CDataLoadingAppTask::Run(), CSeedTop::Run(), CDocLoadingJob::Run(), CScorePValuesCalc::Run(), CIgBlast::Run(), CGridCommandLineInterfaceApp::Run(), CGapStatsApplication::Run(), CMultiCommandApplication::Run(), CGumbelParamsCalc::Run(), CMacroBioData_SeqSetIter::RunDeleteCommand(), CMacroBioData_FeatIterBase::RunEditCommand(), CMacroBioData_SeqSetIter::RunEditCommand(), CBl2Seq::RunEx(), CGapStatsApplication::RunNoCatch(), CBlastTracebackSearch::RunSimple(), CAppJobDispatcher::RunSync(), s_AddBioseqToBioseq(), s_AddBioseqToNucProtSet(), s_AddBioseqToPartsSet(), s_AddMask(), s_AddPartToSegmentedBioseq(), s_AddProtToNuc(), s_AddShift(), s_AddZeroPadInt(), s_AddZeroPadInt2(), s_Adjust(), s_AdjustFirstContext(), s_AdjustFrequencyRatiosMatrixToMatchScoreMatrix(), s_AdjustInsert(), s_AdjustNegativeSubjFrameInBlastn(), s_AliasFileFilterTypeToString(), s_AllocNewPage(), s_AnyHeader(), s_AssignBufferToSeqData(), s_BLAST_OneSubjectResults2CSeqAlign(), s_BlastHSP2SeqAlign(), s_BlastResults2SeqAlignDatabaseSearch_OMF(), s_BlastResults2SeqAlignSequenceCmp_OMF(), s_BuildAlignDataSource(), s_BuildArchiveAll(), s_c2cxxErrorHandler(), s_CalculateScoreVectorSize(), s_Cleanup(), s_Close(), s_CollectBestOverlaps(), s_CollectSeqAlignData(), s_CombineDustMasksWithUserProvidedMasks(), s_CompareDates(), s_CompareOverlapping(), s_Complement(), s_ComputeBtopAndIdentity(), s_ComputeNumSequencesAndDbLength(), s_Contains(), s_Convert(), CUpdateSeq_Input::s_ConvertDeltaToRawBioseq(), s_ConvertHints(), s_ConvertTaskResult(), s_ConvertType(), s_Create5ColFeatTable(), s_CreateAliasFilePriv(), s_CreateDenseg(), s_CreateRepeatsSearchOptions(), s_CreateRotatedFont(), s_CreateSeqAlign(), s_CreateSeqLocMapper(), s_CreateStdSegs(), s_CreateSubtypeValueToNameMap(), s_DetermineComponentType(), s_DivvyUpAlignments_ProcessAnnot(), s_DivvyUpAlignments_ProcessAnnot_Dendiag(), s_DivvyUpAlignments_ProcessAnnot_Denseg(), s_DoDataProxy(), s_DumpCompoundID(), s_DumpHeader(), s_EndOfReference(), s_EndOfTag(), s_ExportSearchStrategy(), s_ExtractBlastDefline(), s_ExtractSeqidsAndRanges(), s_FDir2DBFlag(), s_FillFromPage(), s_FillMaskLocFromBlastResults(), s_FillPool(), s_FindDistAsMax(), s_FindDistAsMean(), s_FindLeafDistances(), s_FindMaxDistFromElem(), s_FindNodeDistance(), s_FindSumDistFromElem(), s_Fingerprint_Byte_graph(), s_Fingerprint_Dbtag(), s_Fingerprint_Dense_diag(), s_Fingerprint_Dense_seg(), s_Fingerprint_Feat_id(), s_Fingerprint_Gb_qual(), s_Fingerprint_Giimport_id(), s_Fingerprint_Int_graph(), s_Fingerprint_Object_id(), s_Fingerprint_Packed_seg(), s_Fingerprint_Packed_seqint(), s_Fingerprint_Packed_seqpnt(), s_Fingerprint_Patent_seq_id(), s_Fingerprint_PDB_seq_id(), s_Fingerprint_Product_pos(), s_Fingerprint_Prot_pos(), s_Fingerprint_Real_graph(), s_Fingerprint_Seq_align(), s_Fingerprint_Seq_align_set(), s_Fingerprint_Seq_bond(), s_Fingerprint_Seq_feat(), s_Fingerprint_Seq_graph(), s_Fingerprint_Seq_id(), s_Fingerprint_Seq_interval(), s_Fingerprint_Seq_loc(), s_Fingerprint_Seq_loc_equiv(), s_Fingerprint_Seq_loc_mix(), s_Fingerprint_Seq_point(), s_Fingerprint_Sparse_align(), s_Fingerprint_Sparse_seg(), s_Fingerprint_Spliced_exon(), s_Fingerprint_Spliced_exon_chunk(), s_Fingerprint_Spliced_seg(), s_Fingerprint_Std_seg(), s_Fingerprint_Textseq_id(), s_FormatCitBook(), s_FormatCitBookArt(), s_FormatCitGen(), s_FormatCitSub(), s_FormatJournal(), s_FormatPatent(), s_FormatSecondaryAccessions(), s_FormatThesis(), s_FtpConnectorBuilder(), s_GetAlignmentLength(), s_GetAlignmentLengths(), s_GetBioseqLabelType(), s_GetBioseqSetLabelType(), s_GetBlastnMask(), s_GetCharType(), s_GetCountIdentityMismatch(), s_GetDate(), s_GetDbSize(), s_GetDetails(), s_GetDigits(), s_GetEncodeValues(), s_GetFromPool(), s_GetGenProdContent(), s_GetListenerStack(), s_GetLString(), s_GetNucProtContent(), s_GetNumberOfSubjects(), s_GetPackedPntStrand(), s_GetQueryBioseq(), s_GetRealMode(), s_GetSegsetContent(), CSequenceUpdater::s_GetUpdateCitSubForSequence(), s_GetURL(), s_GoodHeader(), s_GraphIndexToTitle(), s_ImportDatabase(), s_ImportQueries(), s_ImportSearchStrategy(), s_ImportSubjects(), s_IndexToStrand(), s_Init(), s_InitializeExportStrategy(), s_InitializeGumbelBlk(), s_InitializeKarlinBlk(), s_InitializeSubject(), s_InitNewSeqDbSrc(), CSeqFeatData::s_InitSubtypesTable(), s_InvalidateQueryContexts(), s_IsDuplicateFeatures(), s_IsIPAddress(), s_Lexicographical_compare_arrays(), s_MakeGroupsForUniqueValues(), s_MakeTwoLeafTree(), s_MapDbToThread(), s_MatchingParenPos(), s_MatchPattern(), s_MB_IdbCheckOid(), s_MB_IdbGetResults(), s_MergeDuplicates(), s_MultiSeqGetAvgLength(), s_MultiSeqGetIsProt(), s_MultiSeqGetMaxLength(), s_MultiSeqGetNextChunk(), s_MultiSeqGetNumSeqs(), s_MultiSeqGetSeqLen(), s_MultiSeqGetSequence(), s_MultiSeqIteratorNext(), s_MultiSeqReleaseSequence(), s_MultiSeqSrcNew(), s_Ncbi4naToNcbi2na(), s_NumToBase256(), s_NumToOctal(), s_OctalToNum(), s_OffsetAsString(), s_OOFBlastHSP2SeqAlign(), s_ParsePAXInt(), s_ParseReadJobResponse(), s_PositionAsString(), s_PrintableString(), s_PromoteSingletonSetsInSet(), s_PutToPool(), s_QualClassName(), s_QueryFactoryGetAvgLength(), s_QueryFactoryGetIsProt(), s_QueryFactoryGetMaxLength(), s_QueryFactoryGetMinLength(), s_QueryFactoryGetNextChunk(), s_QueryFactoryGetNumSeqs(), s_QueryFactoryGetSeqLen(), s_QueryFactoryGetSequence(), s_QueryFactoryIteratorNext(), s_QueryFactoryReleaseSequence(), s_QueryFactorySrcNew(), s_QueryInfo_SetContext(), s_Read(), s_ReadMagic(), s_Readsome(), s_RemapToSubjectLoc(), s_RemoveAnnot(), s_RemoveClassMember(), s_RemoveContainerElement(), s_RemovePrimitiveValue(), s_RerootUpstream(), s_RescaleTree(), s_ResetChoiceVariant(), s_RestrictSeqLocs_Multiframe(), s_Reverse(), s_ReverseComplement(), s_ScaleTreeEdges(), s_SeqAlignToBlastSeqLoc(), s_SeqAlignToXMLHit(), s_SeqDB_DBExists(), s_SeqDBInit(), s_SeqDbIteratorNext(), s_SeqDBMapNA2ToNA4(), s_SeqDBMapNA2ToNA8(), s_SeqDbReleaseSequence(), s_SeqDbResetChunkIterator(), s_SeqDbSrcNew(), s_SeqDbSrcSharedNew(), s_SeqLoc2MaskedSubjRanges(), s_ServiceConnectorBuilder(), s_SetBSFromOS(), s_SetLeafIds(), s_SetSplitQuerySeqInterval(), s_SetUpXrefPairsSlow(), s_SignalHandler(), s_SkipDigits(), s_SocketConnectorBuilder(), s_SpliceAnnotsForSeqId(), s_SQLITE_Mem_Malloc(), s_StringToDouble(), s_SummarizeSuspectRule(), s_SvcHeader(), s_Test_Extremes(), s_TranslateAnchorToAlnCoords(), s_TransposeSeqAlignVector(), s_TruncateSpaces(), s_UnpackUserField(), s_Validate(), s_VT_Wait(), s_ZipExtractCallback(), CTypeConverter< T >::SafeCast(), SafeSetupQueries(), SafeSetupQueryInfo(), CBDB_RawFile::SafeTruncate(), NStr::Sanitize(), sAssertMainThread(), CStringHistory::Save(), CBDB_RangeMap< TBV >::Save(), CGBProjectHandle::Save(), CProcessor_ID1::SaveBlob(), CProcessor_St_SE::SaveBlob(), CCacheWriter::SaveBlobState(), CCacheWriter::SaveBlobVersion(), CFileDBEngine::SaveCommand(), CAnnotWriteConfig::SaveConfig(), CProcessor_ID2::SaveData(), CProcessor_ID2AndSkel::SaveDataAndSkel(), CUnlockedTSEsGuard::SaveInternal(), CWindowManagerService::SaveLayout(), CDockManager::SaveLayout(), CDockContainer::SaveLayout(), CUnlockedTSEsGuard::SaveLock(), CProcessor_St_SE::SaveNoBlob(), CPsiBlastApp::SavePssmToFile(), CCacheWriter::SaveSeq_idAccVer(), CCacheWriter::SaveSeq_idGi(), CCacheWriter::SaveSeq_idLabel(), CCacheWriter::SaveSeq_idTaxId(), CCacheWriter::SaveSequenceLength(), CWinMaskerFileStorage::SaveSettings(), CUIDataSourceService::SaveSettings(), CProjectService::SaveSettings(), CSelectionPanel::SaveSettings(), CUIToolRegistry::SaveSettings(), CNetBLASTUIDataSource::SaveSettings(), CEventTablePanel::SaveSettings(), CProcessor_St_SE_SNPT::SaveSNPBlob(), CProcessor_ID2_Split::SaveSplitData(), SaveTableSettings(), CProjectService::SaveWorkspace(), SIssue::SBuilder::SBuilder(), SCigarAlignment::SCigarAlignment(), CCgiEntry::SData::SData(), CProSplign::CImplementation::SeekStartStop(), CLoadLockBlob::SelectChunk(), CScope_Impl::SelectNone(), CScope_Impl::SelectSeq(), CTSE_ScopeInfo::SelectSeq(), CScope_Impl::SelectSet(), CTSE_ScopeInfo::SelectSet(), CObjectOStreamXml::SelfCloseTagEnd(), impl::CBaseCmd::Send(), CEventHandler::Send(), CUTTPWriter::SendChunk(), CUTTPWriter::SendControlSymbol(), impl::CBaseCmd::SendDataCmd(), CUTTPWriter::SendNumber(), CUTTPWriter::SendRawData(), CBrowserUtils::SendToBrowser(), SeqAlignConvert(), SeqDB_GetStdOrdUnaligned(), SeqDB_ReadMemoryGiList(), CRemoteBlastDbAdapter::SeqidToOid(), CRemoteBlastDbAdapter::SeqidToOidBatch(), CBDB_ExtBlobMap::Serialize(), CBDB_BlobMetaContainer::Serialize(), CMappedFeat::Set(), CHeapScope::Set(), pythonpp::CObject::Set(), CMappedGraph::Set(), IRWRegistry::Set(), CBDB_FieldSimpleInt< Uint2 >::Set(), CBDB_FieldSimpleFloat< float >::Set(), CSDB_ConnectionParam::Set(), CCDSInfo::Set5PrimeCdsLimit(), CWindowManagerService::SetAdvisor(), CNetScheduleJobReader::SetAffinity(), CSparseMultiDataSource::SetAnchor(), CBlob_Info::SetAnnotInfo(), CJson_Node::SetArray(), CMacroRep::SetAssignmentWhereClause(), CTextTableModel::SetAttachment(), CAlnSeqId::SetBaseWidth(), CRuler::SetBaseWidth(), CBlastOptionsLocal::SetBestHitOverhang(), CBlastOptionsLocal::SetBestHitScoreEdge(), CSeqDB_BitSet::SetBit(), CTSE_Info::SetBlobVersion(), CBDB_RawFile::SetBtreeMinKeysPerPage(), CRWStreambuf::setbuf(), CIStreamBuffer::SetBufferLock(), CBDB_Field::SetBufferManager(), CBDB_Field::SetBufferSize(), CDataSource_ScopeInfo::SetCanRemoveOnResetHistory(), CODBC_CursorResult::SetCDBResultPtr(), CGeneModel::SetCdsInfo(), CDBConnParams::SetChildObj(), CObjectInfo::SetChoiceVariant(), CBDB_LobFile::SetCmp(), CBDB_File::SetCmp(), CBDB_IdFile::SetCmp(), CBlastSeqVectorFromCSeq_data::SetCoding(), CTextSelHandler::SetColor(), CLinearSelHandler::SetColor(), CRuler::SetColor(), CAlnMultiRenderer::SetColumnsByStyle(), CAlnMultiRenderer::SetColumnUserData(), CAlnMultiRenderer::SetColumnVisible(), CMapControl::SetColumnWidth(), CAnnotConfigUtils::SetConfigObject(), CChain::SetConfirmedStartStopForCompleteProteins(), CChainer::CChainerImpl::SetConfirmedStartStopForProteinAlignments(), CDB_ResultProcessor::SetConn(), CChain::SetConsistentCoverage(), CDataSource_ScopeInfo::SetConst(), CIdDeMux< TBV, TBVFact >::SetCoordinates(), CBlastOptionsLocal::SetCullingLimit(), CAppExplorerDataObject::SetData(), CImage::SetData(), CUpdateSeq_Dlg::SetData(), CDelayBuffer::SetData(), CDbapiSampleApp::SetDatabaseParameter(), CAliasTypeInfo::SetDataOffset(), CAlnMultiWidget::SetDataSource(), CUpdateSeqAlignWidget::SetDataSource(), CSeqDBMapStrategy::SetDefaultMemoryBound(), CAlnMultiModel::SetDefaultMethod(), CAnchoredAln::SetDim(), CDbapiSampleApp::SetDriverName(), CSeq_loc_Conversion::SetDstLoc(), CTSE_ScopeInfo::SetEditTSE(), CBlastOptions::SetEffectiveSearchSpace(), CBDB_Env::SetErrPrefix(), CStatusBarService::SetEventDisplayTime(), CCgiCookie::SetExpTime(), CBioTree< TBioNode >::CBioNode::SetFeature(), CGuiRegistryUtil::SetFieldAt(), CFieldChoicePanel::SetFieldType(), CWorkspaceFormatLoadManager::SetFilenames(), CSearchResultSet::SetFilteredQueryRegions(), CMenuService::SetFrame(), CCleanup::SetFrameFromLoc(), CDockContainer::SetFullTree(), CMacroRep::SetFunctionParameter_As_Bool(), CMacroRep::SetFunctionParameter_As_Ident(), CMacroRep::SetFunctionParameter_As_Int(), CMacroRep::SetFunctionParameter_As_String(), CBlastAdvancedProteinOptionsHandle::SetGappedExtensionDefaults(), CBlastxOptionsHandle::SetGappedExtensionDefaults(), CChainer::CChainerImpl::SetGenomicRange(), CRuler::SetGeometryParam(), CHookDataBase::SetGlobalHook(), CScoreCache::SetGradNumber(), CFilterColumnsDlg::SetGridAdapter(), CBDB_IdBlobFile::SetHash(), CBDB_RawFile::SetHash(), CBDB_RawFile::SetHashFillFactor(), CBDB_RawFile::SetHashNelem(), CSeqDB_ColumnEntry::SetHaveMap(), impl::CBaseCmd::SetHints(), CTL_BCPInCmd::SetHints(), CLocalHookSetBase::SetHook(), CRuler::SetHorizontal(), CGroupTableModel::SetIcon(), CTextTableModel::SetIcon(), CLockVectorGuard< TLockVector >::SetId(), CQueryParserEnv::SetIN_Context(), CDataType::SetInChoice(), SAnnotObjectsIndex::SetIndexed(), CNetBLASTLoadOptionPanel::SetInput(), CBamLoadOptionPanel::SetInput(), CGenBankLoadOptionPanel::SetInput(), CDataType::SetInSet(), CLocalBlast::SetInterruptCallback(), CGroupTableModel::SetIntValueAt(), CwxScoreDlg::SetItems(), CNetScheduleJobReader::SetJobGroup(), CHitList::SetKeepHit(), CAnnotObject_Info::SetKey(), CSeq_point::SetLeftOf(), CCachedSeqDataForRemote::SetLength(), CTSE_LoadLock::SetLoaded(), CDataSource::SetLoaded(), CInfoCache< KeyType, DataType >::SetLoaded(), CLoadLockSetter::SetLoaded(), CReaderRequestResult::SetLoadedBlobIdsFromZeroGi(), CReaderRequestResult::SetLoadedBlobVersion(), CInfoRequestorLock::SetLoadedFor(), CInfoCache< KeyType, DataType >::SetLoadedFor(), CReaderRequestResult::SetLoadedSeqIdsFromZeroGi(), CObjectManager::SetLoaderOptions(), CBlobSplitterImpl::SetLoc(), CHookDataBase::SetLocalHook(), COpenObjectsPanel::SetManagers(), COpenDlg::SetManagers(), CAnnotMapping_Info::SetMappedConverstion(), CAnnotMapping_Info::SetMappedPartial_from(), CAnnotMapping_Info::SetMappedPartial_to(), CAnnotMapping_Info::SetMappedPoint(), CAnnotMapping_Info::SetMappedSeq_align(), CAnnotMapping_Info::SetMappedSeq_align_Cvts(), CAnnotMapping_Info::SetMappedSeq_feat(), CAnnotMapping_Info::SetMappedSeq_id(), CAnnotMapping_Info::SetMappedSeq_loc(), CAnnotMapping_Info::SetMappedStrand(), CWriteDB_Impl::SetMaskedLetters(), CBlastQueryVector::SetMaskedRegions(), CMapControl::SetMaxItemHeight(), CUIToolRegistry::SetMaxMRUSize(), CLoadInfoMap< Key, Info >::SetMaxSize(), CBDB_BufferManager::SetMaxVal(), CBDB_BufferManager::SetMinVal(), CCgiStreamWrapperWriter::SetMode(), CDirEntry::SetMode(), CDir::SetMode(), CSequenceTickGraph::SetModelRect(), CSequenceTextGraph::SetModelRect(), CRuler::SetModelRect(), CDataValue::SetModule(), CModuleContainer::SetModuleContainer(), CTypeStrings::SetModuleName(), CUIToolRegistry::SetMRUToolNames(), CSNPBlobId::SetNAIndex(), SAnnotObjectsIndex::SetName(), CBDB_Field::SetName(), CSNPBlobId::SetNAVersion(), CTypeInfo::SetNsQualified(), CBDB_Field::SetNull(), CBDB_BufferManager::SetNull(), CBDB_BufferManager::SetNullable(), CBDB_BufferManager::SetNullBit(), CJson_Node::SetObject(), CAgpExportPage::SetObjects(), CDotMatrixPanel::SetObjects(), CChain::SetOpenForPartialyAlignedProteins(), CBDB_Cache::SetOverflowLimit(), CBDB_RawFile::SetPageSize(), IGlEventHandler::SetPane(), python::CStmtHelper::SetParam(), python::CCallableStmtHelper::SetParam(), CHitMatrixDataSource::SetParams(), CBLASTSearchOptionsPanel::SetParams(), CDataType::SetParent(), CClassTypeInfo::SetParentClass(), CSeq_interval::SetPartialStart(), CSeq_interval::SetPartialStop(), CCurveBezier::SetPoint(), CCurveCubic::SetPoint(), CBlastOptionsLocal::SetProgram(), CGBProjectHandle::SetProject(), CFeatureGraph::SetProperties(), CDiagContext::SetProperty(), CChoicePointerTypeInfo::SetPtrIndex(), CClassTypeInfo::SetRandomOrder(), CPhrap_Sequence::SetRead(), CCDSInfo::SetReadingFrame(), CSeqMap::SetRegionInChunk(), CRegistryFile::SetRegistry(), CReferenceItem::SetRemark(), CSplitter::SetResizableCell(), CAlnMultiRenderer::SetResizableColumn(), CSeq_point::SetRightOf(), CLayout::SetRow(), CHTML_tr_Cache::SetRowNode(), CAlnMultiModel::SetRowOrder(), CRowStyleCatalog::SetRowStyle(), CRowStyleCatalog::SetRowTypeStyle(), CGBProjectHandle::SetScope(), CGBProject::SetScope(), CCDSInfo::SetScore(), SetScores(), SAnnotSelector::SetSearchExternal(), CRandom::SetSeed(), CSeqMap::SetSegmentData(), CSeqMap::SetSegmentGap(), CSeqMap::SetSegmentRef(), CChoiceTypeInfo::SetSelectDelay(), CTaxTreeBrowser::SetSelectedUids(), CSeq_annot_SplitInfo::SetSeq_annot(), CSeq_data_SplitInfo::SetSeq_data(), CLoadLockSetter::SetSeq_entry(), CSNPBlobId::SetSeqAndFilterIndex(), CTable2AsnContext::SetSeqId(), CAppTaskService::SetServiceLocator(), CRgbaGradColorTable::SetSize(), CBuildDatabase::SetSourceDb(), CTSE_Split_Info::SetSplitVersion(), CCDSInfo::SetStart(), CNcbiApplication::SetStdioFlags(), CBDB_FieldFixedByteString::SetStdString(), CCDSInfo::SetStop(), CPackString::SNode::SetString(), CGroupTableModel::SetStringValueAt(), CTextTableModel::SetStringValueAt(), CAlnMultiWidget::SetStyleCatalog(), SPluginParams::SetSubNode(), CMoreTableColsDlg::SetTable(), CSeqTableLocColumns::SetTableKeyAndIndex(), CTrackContainer::SetTrack(), CBDB_Env::SetTransactionMax(), CBioTree< TBioNode >::SetTreeNode(), CSeq_interval::SetTruncatedStart(), CSeq_interval::SetTruncatedStop(), CTSE_ScopeInfo::SetTSE_Lock(), DTDElement::SetType(), CPssmEngine::SetUngappedStatisticalParams(), CGridCommandLineInterfaceApp::SetUp_NetScheduleCmd(), CDiagContext::SetupDiag(), SetupQueries_OMF(), SetupQueryInfo_OMF(), SetupSubjects_OMF(), CSpecificHostModel::SetValue(), CJson_Node::SetValue(), CEnumeratedTypeInfo::SetValueInt4(), CEnumeratedTypeInfo::SetValueInt8(), SHitColoringParams::SetValueRange(), CEnumeratedTypeInfo::SetValueUint4(), CEnumeratedTypeInfo::SetValueUint8(), CMacroRep::SetVar_Choice_Entry_Bool(), CMacroRep::SetVar_Choice_Entry_Int(), CMacroRep::SetVar_Choice_Entry_String(), CGBProject::SetViewSettings(), CDockLayoutTree::CNode::SetWindow(), CGlPane::SetZoomFactor(), CFeature_table_reader_imp::SFeatAndLineNum::SFeatAndLineNum(), sFindAnchorRow(), CSeqTreePane::SHH_GetModelByWindow(), CGlPaneWidgetChildDemo::SHH_GetModelByWindow(), CHitMatrixPane::SHH_GetModelByWindow(), CCrossAlnPane::SHH_GetModelByWindow(), CPhyloTreePane::SHH_GetModelByWindow(), CAlnMultiPane::SHH_GetModelByWindow(), CSeqGraphicPane::SHH_GetModelByWindow(), CSeqTreePane::SHH_GetWindowByModel(), CGlPaneWidgetChildDemo::SHH_GetWindowByModel(), CHitMatrixPane::SHH_GetWindowByModel(), CCrossAlnPane::SHH_GetWindowByModel(), CPhyloTreePane::SHH_GetWindowByModel(), CAlnMultiPane::SHH_GetWindowByModel(), CSeqGraphicPane::SHH_GetWindowByModel(), CConn_Streambuf::showmanyc(), CPushback_Streambuf::showmanyc(), CRWStreambuf::showmanyc(), CViewManagerService::ShowSingletonView(), CPhyTreeFormatter::ShowSubtree(), CAlignMap::ShrinkToRealPoints(), CAlignMap::ShrinkToRealPointsOnEdited(), CWorkbench::ShutDown(), CViewManagerService::ShutDownService(), SIdAnnotObjs::SIdAnnotObjs(), CCacheDemoApp::SimpleCacheDemo(), CObjectIStreamXml::SkipAttributeValue(), AbstractLexer::SkipChars(), CReadInSkipClassMemberHook< Member >::SkipClassMember(), CIStreamBuffer::SkipEndOfLine(), CMemberInfoFunctions::SkipHookedMember(), CVariantInfoFunctions::SkipHookedVariant(), CMemberInfoFunctions::SkipMissingHookedMember(), CMemberInfoFunctions::SkipMissingOptionalMember(), CMemberInfoFunctions::SkipMissingParentClass(), CMemberInfoFunctions::SkipMissingSimpleMember(), CVariantInfoFunctions::SkipNonObjectVariant(), CLDS2_AnnotType_Hook::SkipObject(), CReadInSkipObjectHook< Object >::SkipObject(), CVariantInfoFunctions::SkipObjectPointerVariant(), CBlastDbBlob::SkipPadBytes(), CObjectIStreamXml::SkipQDecl(), CTreeIteratorTmpl< CTreeLevelIterator >::SkipSubTree(), CObjectIStreamXml::SkipWSAndComments(), CClassTypeStrings::SMemberInfo::SMemberInfo(), CPhyloTreePane::SoftUpdate(), SourceToProduct(), CSplitter::Split(), CBlobSplitterImpl::SplitBioseq(), CBlobSplitterImpl::SplitPieces(), SplitQuery_CalculateNumChunks(), SplitQuery_CreateChunkData(), SplitQuery_SetEffectiveSearchSpace(), CAnchoredAln::SplitStrands(), sPrepareSeqAlign(), CThreadPoolEngine::StartJob(), CGBSeqFormatter::StartSection(), CSeq_annot_Info::StartSortedIterator(), ASNLexer::StartString(), CIStreamBuffer::StartSubSource(), AbstractLexer::StartToken(), CAppJobDispatcher::StateToStr(), CNamedPipeHandle::Status(), CJobStatusTracker::StatusStatistics(), CNetScheduleAPI::StatusToString(), CBDB_Volumes::StatusToString(), CTreeIteratorTmpl< CTreeLevelIterator >::Step(), CSQLITE_Statement::Step(), CFeatureGenerator::SImplementation::StitchSmallHoles(), CBDB_ExtBlobStore< TBV >::StoreBlob(), CSQLITE3_Cache::StoreSynchronous(), STzFormatCheck::str(), NStr::StringToDoublePosix(), CSeqDBIsam::StringToOids(), NStr::StringToUInt8_DataSize(), CObjectList::_CColumn::StringVector(), CNetBlastJobDescriptor::Submit(), CSeqConvert_imp::Subseq(), CCddInputData::CHit::Subtract(), SubtractAlnRngCollections(), CSeqFeatData::SubtypeNameToValue(), CTSE_ScopeInfo::SUnloadedInfo::SUnloadedInfo(), CStd_seg::SwapRows(), CHttpRequest::sx_Adjust(), CParam< TDescription >::sx_GetDefault(), sx_MakeGapLiteral(), CRPCClient< TRequest, TReply >::sx_ParseHeader(), CHttpRequest::sx_ParseHeader(), sx_PushLastNewPtrMultiple(), CConn_Streambuf::sync(), CRWStreambuf::sync(), CGlModel2D::SyncBuffers(), CTreeGraphicsModel::SyncBuffers(), CSeq_annot_Info::TableFeat_GetLabel(), CSeq_annot_Info::TableFeat_HasLabel(), CAlignModel::TargetAccession(), CNcbiTestsTreeBuilder::test_suite_finish(), CArchiveZip::TestEntry(), TestEventAttachment(), CBDB_BufferManager::TestNullBit(), CSplitCacheApp::TestSplitBioseq(), CSplitCacheApp::TestSplitBlob(), CMacroFunction_FeatStrandednessConstraint::TheFunction(), CMacroFunction_PubFields::TheFunction(), CMacroFunction_LocPartialTest::TheFunction(), CMacroFunction_NumberOfFeatures::TheFunction(), CMacroFunction_IsPresent::TheFunction(), CMacroFunction_FixSpelling::TheFunction(), CMacroFunction_FixProteinFormat::TheFunction(), CMacroFunction_StringConstraints::TheFunction(), CMacroFunction_LocationType::TheFunction(), CMacroFunction_RelatedFeatures::TheFunction(), CMacroFunction_RemoveSingleItemSet::TheFunction(), CMacroFunction_LocationSeqType::TheFunction(), CMacroFunction_ExtendFeature::TheFunction(), CMacroFunction_Seqdesc_For_Seqfeat::TheFunction(), CMacroFunction_DiscrepancyAutofix::TheFunction(), CMacroFunction_LocationDistConstraint::TheFunction(), CMacroFunction_SetBothPartials::TheFunction(), CMacroFunction_StringLength::TheFunction(), CMacroFunction_Autodef::TheFunction(), CMacroFunction_ModifyPrimerSeq::TheFunction(), CMacroFunction_SetPubField::TheFunction(), CMacroFunction_FixFormat::TheFunction(), CMacroFunction_ApplyCDSFrame::TheFunction(), CMacroFunction_ApplyPublication::TheFunction(), CMacroFunction_RenormalizeNucProtSet::TheFunction(), CMacroFunction_ConvertFeature::TheFunction(), CMacroFunction_FixPubCaps::TheFunction(), CMacroFunction_AuthorFix::TheFunction(), CMacroFunction_RemoveDuplFeatures::TheFunction(), CMacroFunction_AddGeneXref::TheFunction(), CMacroFunction_SetQual::TheFunction(), CMacroFunction_RemoveGeneXref::TheFunction(), CMacroFunction_RemoveQual::TheFunction(), CMacroFunction_SwapQual::TheFunction(), CMacroFunction_JoinShorttRNAs::TheFunction(), CMacroFunction_SwapRelatedFeaturesQual::TheFunction(), CMacroFunction_ReplaceStopWithSelenocysteine::TheFunction(), CMacroFunction_SetStringQual::TheFunction(), CMacroFunction_RetranslateCDS::TheFunction(), CMacroFunction_EditStringQual::TheFunction(), CMacroFunction_ConvertStringQual::TheFunction(), CMacroFunction_ParseStringQual::TheFunction(), CMacroFunction_AecrParseStringQual::TheFunction(), CMacroFunction_ParsedText::TheFunction(), CMacroFunction_AddorSetContElement::TheFunction(), CMacroFunction_ChangeSeqInst::TheFunction(), CMacroFunction_RemoveSegGaps::TheFunction(), CMacroFunction_SatelliteFields::TheFunction(), CMacroFunction_RemoveSubfield::TheFunction(), CMacroFunction_ReorderStructComment::TheFunction(), CMacroFunction_MakeBoldXrefs::TheFunction(), SProjectSelectorParams::ToLoadingOptions(), CConn_MemoryStream::ToString(), CConn_MemoryStream::ToVector(), CGeneModel::TranscriptExon(), CGeneModel::TranscriptLimits(), CLocationPanel::TransferDataToWindow(), CInterfaceObjectLocker< IAlignRow >::TransferLock(), RemoveTrailingNs::transform_model(), CCdregion_translate::TranslateCdregion(), CProteinAlignText::TranslateDNA(), CChainer::CChainerImpl::TrimAlignmentsIncludedInDifferentGenes(), TrimAlignment::TrimCodingExonLeft(), TrimAlignment::TrimCodingExonRight(), CGeneModel::TrimEdgesToFrameInOtherAlignGaps(), CDense_seg::TrimEndGaps(), CFeatureGenerator::SImplementation::TrimHolesToCodons(), CFeatureGenerator::SImplementation::TrimLeftExon(), TrimAlignment::TrimProtein(), CFeatureGenerator::SImplementation::TrimRightExon(), TrimSpacesAndJunkFromEnds(), TrimAlignment::TrimTranscript(), CMemStore::Truncate(), CBDB_RawFile::Truncate(), NStr::TruncateSpacesInPlace(), CRWLock::TryWriteLock(), NStr::UInt8ToString_DataSize(), CByteStreamBuf::underflow(), CCgiIbuffer::underflow(), CConn_Streambuf::underflow(), CPushback_Streambuf::underflow(), CRWStreambuf::underflow(), CUndoManager::Undo(), CRemoveTSE_EditCommand::Undo(), CSetValue_EditCommand< TEditHandle, T >::Undo(), CAttachAnnot_EditCommand< Annot >::Undo(), CResetValue_EditCommand< TEditHandle, T >::Undo(), CRemove_EditCommand< TEditHandle >::Undo(), CCmdChangeSeqEntry::Unexecute(), CWigBufferedLineReader::UngetLine(), CStreamLineReader::UngetLine(), CMemoryLineReader::UngetLine(), CBufferedLineReader::UngetLine(), CSeqDB_BitSet::UnionWith(), CLockVector< BV >::Unlock(), CLockVectorGuard< TLockVect >::Unlock(), CMiniMutex::Unlock(), CInterfaceObjectLocker< IAlignRow >::Unlock(), CRWLock::Unlock(), CLocksMonitor::SLocks::Unlocked(), CInterfaceObjectLocker< IAlignRow >::UnlockRelease(), CBDB_Field::Unpack(), CBDB_BufferManager::Unpack(), UnpackUserObject(), CStickyTooltipHandler::UnpinPinned(), CGlPane::UnProject(), CGlPane::UnProjectEx(), CGlPane::UnProjectHeight(), CGlPane::UnProjectWidth(), CGlPane::UnProjectX(), CGlPane::UnProjectY(), CWindowManagerService::UnRegisterActiveClient(), CSeqDBAtlas::UnregisterExternal(), CWorkbench::UnRegisterService(), CNcbiEnvironment::Unset(), CSparseMultiDataSource::UnsetAnchor(), CDensityMapDS::Update(), CSeqTextPane::Update(), CHitMatrixPane::Update(), CPhyloTreePane::Update(), CNetBLAST_DMSearchForm::Update(), CSeq_annot_Info::Update(), impl::CBaseCmd::Update(), CFeatHistogramDS::Update(), CSeq_annot_Info::UpdateAnnotIndex(), CBioseq_set_Info::UpdateAnnotIndex(), CDataSource::UpdateAnnotIndex(), CTSE_Info::UpdateAnnotIndex(), impl::CBaseCmd::UpdateBlob(), CLDS2_Manager::UpdateData(), PT::CRoot::UpdateDataSources(), CVariantInfo::UpdateDelayedBuffer(), CMemberInfo::UpdateDelayedBuffer(), PT::CProjectFolder::UpdateDisabledItems(), CVariantInfo::UpdateFunctions(), CAlignRangeCollExtender< TAlnRngColl >::UpdateIndex(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::UpdateInsert(), CAnnotMapping_Info::UpdateMappedSeq_loc(), CWindowManagerService::UpdateMenuBar(), CSeqTableLocColumns::UpdateSeq_loc(), CGraphOverlay::UpdateSource(), CEventViewModel::UpdateTable(), CDataSource_ScopeInfo::UpdateTSELock(), PT::CProject::UpdateViews(), NStr::URLEncode(), CBlastQueryFilteredFrames::UseProteinCoords(), CDockLayoutTree::Validate(), CCddInputData::CHitSegment::Validate(), CCddInputData::CHit::Validate(), CValidError_imp::Validate(), CProjectFormatLoadManager::ValidateFilenames(), CValidError_feat::ValidateMrnaTrans(), CAlignRangeCollection< CAlignRange< TSeqPos > >::ValidateRanges(), CMultAlign::Variations(), CRegionMap::Verify(), CHit::VerifyHit(), CEditScript::VerifyScript(), CAlnVwrApp::View10(), CSelectionVisitor::Visit(), CProcess::Wait(), CTreeIteratorTmpl< CTreeLevelIterator >::Walk(), CxBlobWriter::Write(), CWriteDB_File::Write(), CBufferWriter< Buffer >::Write(), CNamedPipeHandle::Write(), CPipeHandle::Write(), CDBAPI_CacheIWriter::Write(), CBDB_CacheIWriter::Write(), CBinaryListBuilder::Write(), CSQLITE_Blob::Write(), CWriteDB_ColumnIndex::WriteBlobIndex(), CObjectOStreamAsnBinary::WriteByte(), CObjectOStreamAsnBinary::WriteClassTag(), WriteDB_EaaToBinary(), WriteDB_IupacaaToBinary(), WriteDB_IupacnaToBinary(), WriteDB_Ncbi2naToBinary(), WriteDB_Ncbi4naToBinary(), WriteDB_StdaaToBinary(), CVariantInfoFunctions::WriteDelayedVariant(), CObjectOStreamAsn::WriteDouble2(), CObjectOStreamAsnBinary::WriteDouble2(), CObjectOStreamXml::WriteEnum(), CHttpFormData::WriteFormData(), CMemberInfoFunctions::WriteHookedMember(), CVariantInfoFunctions::WriteHookedVariant(), CVariantInfoFunctions::WriteInlineVariant(), CCmdLineArgList::WriteLine(), CRWLock::WriteLock(), CJsonOverUTTPWriter::WriteMessage(), CDiagHandler::WriteMessage(), CUnalignedRegionDlg::WriteNormalText(), CVariantInfoFunctions::WriteObjectPointerVariant(), CMemberInfoFunctions::WriteOptionalMember(), CBlastDbBlob::WritePadBytes(), CMemberInfoFunctions::WriteParentClass(), CVariantInfoFunctions::WritePointerVariant(), CUnalignedRegionDlg::WriteRedText(), CCacheWriter::WriteSeq_ids(), CWriteDB_Volume::WriteSequence(), CMemberInfoFunctions::WriteSimpleMember(), CVariantInfoFunctions::WriteSubclassVariant(), CMemberInfoFunctions::WriteWithDefaultMember(), CMemberInfoFunctions::WriteWithDefaultMemberX(), CMemberInfoFunctions::WriteWithSetFlagMember(), CReader::x_AbortConnection(), CInfoManager::x_AcquireLoadLock(), CIdMapperGCAssembly::x_AddAliasMappings(), CAlignmentTrack::x_AddAlignFeat_Recursive(), CAlignmentTrack::x_AddAlignFeatLayout(), CAlignmentTrack::x_AddAlignmentLayout(), CPhrap_Contig::x_AddAlignRanges(), CAlignmentTrack::x_AddAlignStatLayout(), CTSE_Chunk_Info::x_AddAnnotType(), CBioseq_Info::x_AddAssemblyChunkId(), CPhrap_Contig::x_AddBaseSegFeats(), CTSE_Chunk_Info::x_AddBioseqId(), CTSE_Split_Info::x_AddBioseqPlace(), CSeqConvert_imp::CPacker::x_AddBoundary(), CGeneModelTrack::x_AddCDSmRNA_SNPLayout(), CGeneModelTrack::x_AddCDSProduct_FeatsLayout(), CSeqdesc_CI::x_AddChoice(), CDockContainer::x_AddClientInTab(), CReader::x_AddConnection(), CId2Reader::x_AddConnectionSlot(), CPubseq2Reader::x_AddConnectionSlot(), CId1Reader::x_AddConnectionSlot(), CPubseqReader::x_AddConnectionSlot(), CPhrapReader::x_AddContig(), x_AddCoverage(), CBlastTabularInfo::x_AddDefaultFieldsToShow(), CArgDescriptions::x_AddDesc(), SBDB_CacheUnitStatistics::x_AddErrGetPut(), CSeq_loc_Mapper_Base::x_AddExonPartsMapping(), CGeneModelTrack::x_AddFeatProductLayout(), CFeatureTrack::x_AddFeaturesLayout(), CCachedSequence::x_AddFullSeq_data(), CGapAnalysis::x_AddGapsFromBases(), CAlignmentTrack::x_AddGraphLayout(), x_AddGraphLoc(), CAlnStats< _TAlnIdVec >::x_AddId(), CAppJobDispatcher::x_AddJobRecord(), CEventHandler::x_AddListenerToPool(), CFastaReader::x_AddMultiwayAlignment(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_AddNewRoot(), CAnnot_Collector::x_AddObjectMapping(), CMergedPairwiseAln::x_AddPairwise(), CFastaReader::x_AddPairwiseAlignments(), CExportStrategy::x_AddParameterToProgramOptions(), CWriteDB_IsamIndex::x_AddPdb(), CSourceFeatureItem::x_AddQuals(), CFeatureItem::x_AddQualsBond(), CFeatureItem::x_AddQualsHet(), CFeatureItem::x_AddQualsProt(), CFeatureItem::x_AddQualsPsecStr(), CFeatureItem::x_AddQualsRegion(), CFeatureItem::x_AddQualsRegulatoryClass(), CFeatureItem::x_AddQualsSite(), CFeatureItem::x_AddQualsVariation(), CPhrapReader::x_AddRead(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_AddRegularSplit(), CMultiAligner::x_AddRpsFreqsToCluster(), CGather_Iter::x_AddSeqEntryToStack(), CNCMMSizePool::x_AddSetToList(), CWriteDB_IsamIndex::x_AddString(), CWriteDB_IsamIndex::x_AddStringData(), CScope_Impl::x_AddSynonym(), CTaskViewModel::x_AddTasks(), CInfoCache_Base::x_AddToGCQueue(), CTracingHandler::x_AddTrace(), CAnnot_Collector::x_AddTSE(), CIdMapperGCAssembly::x_AddUnversionedMapping(), CObjectListTableModel::x_AdjustColToData(), CGlPane::x_AdjustVisibleRect(), CStreamLineReader::x_AdvanceEOLUnknown(), CMultiAligner::x_AlignClusterQueries(), CMultiAligner::x_AlignMSAs(), CMultiAligner::x_AlignProfileProfileUsingHit(), CNCMMCentral::x_AllocAlignedLongWay(), CScoringJob::x_AllocBuffer(), CwxAnnotConfigDlg::x_AnnotBrowserSelectionChanged(), CArchive::x_Append(), CTar::x_Append(), x_Append2To2(), x_Append4To4(), x_Append8To2(), x_Append8To4(), x_Append8To8(), x_AppendAnyTo2(), x_AppendAnyTo4(), x_AppendAnyTo8(), CTar::x_AppendFile(), x_AppendGapTo4(), x_AppendRandomTo2(), CTar::x_AppendStream(), x_ApplyCmd(), CRequestRateControl::x_Approve(), CMacroVarChoice::x_Assert(), CSelectionControl::x_AssertIndexValid(), CGlPane::x_AssertNotOpen(), CGlPane::x_AssertOrtho(), CObjectListTableModel::x_AssertRowValid(), CSparseAlignment::x_AssertRowValid(), CObjectList::x_AssertValidColumn(), CObjectList::x_AssertValidLabel(), CObjectList::x_AssertValidRow(), CSDB_Exception::x_Assign(), CTSE_Lock::x_Assign(), CFeatTree::x_AssignGenesByOverlap(), CInfoManager::x_AssignLoadMutex(), CTL_BCPInCmd::x_AssignParams(), CFeatTree::x_AssignParentByRef(), CFeatTree::x_AssignParentsByOverlap(), CMultiAligner::x_AssignRPSResFreqs(), CGBDocument::x_AssignViewIndex(), CTimeSpan::x_AsSmartString_Precision(), CTimeSpan::x_AsSmartString_Smart_Big(), CTimeSpan::x_AsSmartString_Smart_Small(), CBioseq_Base_Info::x_AttachAnnot(), CScope_Impl::x_AttachAnnot(), CMultiAligner::x_AttachClusterTrees(), CGBDocument::x_AttachDataLoaders(), CBioseq_set_Info::x_AttachEntry(), CScope_Impl::x_AttachEntry(), CSequenceUpdater::x_AttachFeaturesToNewSeq(), CLocalFileRestorer::x_AttachNewObject(), CTSE_Info_Object::x_AttachObject(), CGBDocument::x_AttachProjectItems(), CScope_Impl::x_AttachToOM(), CScopeInfo_Base::x_AttachTSE(), CGBDocument::x_AttachView(), CBlastQuerySourceOM::x_AutoDetectGeneticCodes(), CFileLoadManager::x_AutoGuessFormat(), CTar::x_Backspace(), CTSE_Info_Object::x_BaseParentAttach(), CTSE_Info_Object::x_BaseParentDetach(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_cit_cit_pub_E_E_ETC(), x_BlockTEA_Decode(), x_BlockTEA_Encode(), CScoringJob::x_BufferGetColumn(), CScoringJob::x_BufferGetSeq(), CSparseAln::x_Build(), CMultiAligner::x_BuildAlignment(), CMakeBlastDBApp::x_BuildDatabase(), CMultiAligner::x_BuildFullTree(), CWriteDB_ColumnIndex::x_BuildHeaderStrings(), CDumpASNIndex::x_BuildIndexAndSeqIdInfo(), CWriteDB_ColumnIndex::x_BuildMetaData(), CMacroFunction_StringConstraints::x_BuildNoCaseStringConstraint(), CBlastFormatterApp::x_BuildQueryFromPssm(), CMacroFunction_StringConstraints::x_BuildStringConstraint(), CGapStatsApplication::x_CalcAllGapLens(), CPhyTreeCalc::x_CalcAlnSegInfo(), CPhyTreeCalc::x_CalcDistMatrix(), CPhyTreeCalc::x_CalcDivergenceMatrix(), CNCMMSlab::x_CalcEmptyGrade(), CNCMMBlocksSet::x_CalcEmptyGrade(), CLinkedFeatsGroup::x_CalcIntervals(), CFlatFileTextItem::x_CalcLineCount(), CScoringJob::x_CalculateAlignmentScores(), CColumnScoringMethod::x_CalculateConsensusScores(), CCachedSeqDataForRemote::x_CalculateNumberOfSlices(), CRuler::x_CalculatePosLabelsStep(), CPushback_Streambuf::x_Callback(), CFeatureGraph::x_CancelJob(), CMouseZoomHandler::x_CaptureMouse(), CQueue::x_ChangeReadingStatus(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_ChangeRoot(), CSeq_loc::x_ChangeToPackedInt(), CSeq_loc::x_ChangeToPackedPnt(), CNewCleanup_imp::x_ChangeTransposonToMobileElement(), CInfoCache_Base::x_Check(), CTSE_ScopeInfo::x_CheckAdded(), CMacroFunction_StringConstraints::x_CheckAuthorNames(), CSnpFilterUI::x_CheckChanges(), CGridCgiApplication::x_CheckJobStatus(), CBamRefSeqIterator::x_CheckRC(), CBamAlignIterator::x_CheckRC(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_CheckRootSplit(), CBDB_Volumes::x_CheckStatusChange(), CUnculturedTool::x_CheckSuggestedFix(), CSeqDBVol::x_CheckVersions(), CWriteDB_Impl::x_ClearHaveSequence(), CTextSelHandler::x_ClipPosByRange(), CTraversalNode::x_CloneWithoutCallers(), CFrameworkDemoGUI::x_CloseAllViews(), CSQLITE_Blob::x_CloseBlob(), CWindowManager::x_CloseClient(), CFastaReader::x_CloseGap(), CFastaReader::x_CloseMask(), CProjectTask::x_CloseWorkspace(), CObjectListTableModel::x_ColIsLabel(), CAnnot_Collector::x_CollectSegments(), CHttpCookie_CI::x_Compare(), CBlastSeqVectorFromCSeq_data::x_ComplementData(), CQuerySplitter::x_ComputeChunkRanges(), CMultiAligner::x_ComputeClusterTrees(), CQuerySplitter::x_ComputeContextOffsets_NonTranslatedQueries(), CQuerySplitter::x_ComputeContextOffsets_TranslatedQueries(), CSeqDBOIDList::x_ComputeFilters(), CQuerySplitter::x_ComputeQueryContextsForChunks(), CQuerySplitter::x_ComputeQueryIndicesForChunks(), CPhyTreeCalc::x_ComputeTree(), CMultiAligner::x_ComputeTree(), CTrackMgrClient::x_Connect(), CRPCClient< TRequest, TReply >::x_Connect(), CMaskWriterBlastDbMaskInfo::x_ConsolidateListOfMasks(), CQueryDataPerChunk::x_ContextInChunkToQueryIndex(), CSeq_align_Mapper::x_ConvertAlignCvt(), CPhrapReader::x_ConvertContig(), CMacroFunction_ConvertStringQual::x_ConvertFields(), CBlastDbBlob::x_Copy(), CFeatureGenerator::SImplementation::x_CopyAdditionalFeatures(), CPromote::x_CopyCdregionToRNA(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), CPsiBlastInputData::x_CopyQueryToMsa(), CPhyTreeCalc::x_CorrectBranchLengths(), CBDB_RawFile::x_Create(), CWGSSeqIterator::x_CreateBioseq(), CWGSScaffoldIterator::x_CreateBioseq(), CWGSProteinIterator::x_CreateBioseq(), CMultiAligner::x_CreateBlastQueries(), CWGSSeqIterator::x_CreateChunk(), CClusterer::x_CreateCluster(), CDockContainer::x_CreateContainerWindow(), CProjectView::x_CreateContextMenuBackbone(), CCrossAlnWidget::x_CreateControls(), CGlWidgetBase::x_CreateControls(), CPhyloTreeWidget::x_CreateControls(), CBDB_RawFile::x_CreateDB(), CAlnMixMerger::x_CreateDenseg(), CExtensionRegistry::x_CreateExtensionPoint(), CSGFeatureJob::x_CreateFeatHistFromGraph(), CGFFReader::x_CreateGeneFeatures(), CFeature_table_reader_imp::x_CreateGenesFromCDSs(), CwxNCBIApp::x_CreateGUI(), CHitMatrixDataSource::x_CreateHit_Denseg(), CHitMatrixDataSource::x_CreateHit_Std(), CHitMatrixDataSource::x_CreateHits(), CNetBLAST_DMSearchTool::x_CreateJob(), CProSplignTool::x_CreateLoadingJob(), CDiagSyntaxParser::x_CreateMatcher(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CBlastnAppArgs::x_CreateOptionsHandle(), CBlastxAppArgs::x_CreateOptionsHandle(), CBlastpAppArgs::x_CreateOptionsHandle(), CIgBlastnAppArgs::x_CreateOptionsHandle(), CIgBlastpAppArgs::x_CreateOptionsHandle(), CTblastnAppArgs::x_CreateOptionsHandle(), CBlastAppArgs::x_CreateOptionsHandleWithTask(), CAlnMultiWidget::x_CreatePane(), CAlnMultiWidget::x_CreatePopupMenu(), CClustalwToolJob::x_CreateProjectItems(), CProSplignJob::x_CreateProjectItems(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), SWGSCreateInfo::x_CreateProtSet(), CPssmEngine::x_CreatePssmFromCDD(), CPssmEngine::x_CreatePssmFromFreqRatios(), CPssmEngine::x_CreatePssmFromMsa(), CNetBlastJobDescriptor::x_CreateRemoteBlastIfNeeded(), CAlnMultiModel::x_CreateRow(), CAlnMultiWidget::x_CreateScoringMethodsMenu(), CPhrap_Contig::x_CreateSeq_align(), CMagicBlast::x_CreateSeqAlignSet(), CBlastFormat::x_CreateSubjectBioseq(), CTrackContainer::x_CreateTracksMenu(), CPhyTreeCalc::x_CreateValidAlign(), CBDB_RawFile::x_DB_CPut(), CBDB_RawFile::x_DB_Fetch(), CBDB_RawFile::x_DB_Put(), CInfoManager::x_DeadLock(), CNCMMSizePool::x_DeallocateBlock(), CSelectionControl::x_DebugValid(), CNcbiEncrypt::x_Decrypt(), CAsn2GffApp::x_DeduceTarget(), CAsn2FlatApp::x_DeduceTarget(), CAlnVecMultiDataSource::x_DeleteJob(), CSparseMultiDataSource::x_DeleteJob(), CScoreCache::x_DeleteJob(), CSGAlignmentDS::x_DeleteScoringJob(), CCgiEntryReaderContext::x_DelimitedRead(), CSplitter::x_Deprecated(), CDockManager::x_DestroyFrameAndContainer(), CDockContainer::x_DestroyNode(), CBioseq_Base_Info::x_DetachAnnot(), CGBDocument::x_DetachDataLoaders(), CTSE_ScopeInfo::x_DetachDS(), CBioseq_set_Info::x_DetachEntry(), CScope_Impl::x_DetachFromOM(), CProjectViewBase::x_DetachFromProject(), CTSE_Info_Object::x_DetachObject(), CGBDocument::x_DetachProjectItems(), CScopeInfo_Base::x_DetachTSE(), CGBDocument::x_DetachView(), CPhrapReader::x_DetectFormatVersion(), CTSE_Chunk_Info::x_DisableAnnotIndexWhenLoaded(), CId2Reader::x_DisconnectAtSlot(), CPubseq2Reader::x_DisconnectAtSlot(), CId1Reader::x_DisconnectAtSlot(), CPubseqReader::x_DisconnectAtSlot(), CGlWidgetPane::x_DispatchEventToHandler(), CNCMessageHandler::x_DoCmd_SyncStart(), CProjectTask::x_DoEnsureProjectSaved(), CImportFeatTable::x_DoImportCDS(), CProjectTask::x_DoOpenWorkspace(), CSplitter::x_DoResize(), CServer::x_DoRun(), CTraversalMerger::x_DoTier(), CBioseq_Base_Info::x_DoUpdate(), CBioseq_set_Info::x_DoUpdate(), CSeq_entry_Info::x_DoUpdate(), CAlnMultiModel::x_DoUpdateRowsOrder(), CSeqMap::x_DoUpdateSeq_inst(), CRsitesGlyph::x_Draw(), CLegendItemGlyph::x_Draw(), CSegmentSmearGlyph::x_Draw(), CMatePairGlyph::x_Draw(), CClonePlacementGlyph::x_Draw(), CFeatGlyph::x_Draw(), CHistogramGlyph::x_Draw(), CLinkedFeatsGroup::x_DrawChildrenOnParent(), CFeatGlyph::x_DrawRSites(), CTSE_Lock::x_Drop(), CPushback_Streambuf::x_DropBuffer(), CDataSource::x_DropTSE(), CTSE_Info_Object::x_DSAttach(), CTSE_Split_Info::x_DSAttach(), CTSE_Info_Object::x_DSAttachContents(), CTSE_Info::x_DSAttachContents(), CTSE_Info_Object::x_DSDetach(), CTSE_Info_Object::x_DSDetachContents(), CTSE_Info::x_DSDetachContents(), CTSE_Chunk_Info::x_EnableAnnotIndex(), CNcbiEncrypt::x_Encrypt(), CBuildDatabase::x_EndBuild(), CNcbiTestTreeElement::x_EnsureChildOrder(), CCache< TKey, TValue, THandler, TLock, TSize >::x_EraseElement(), CSelListModelImpl< Item >::x_EraseItem(), CCache< TKey, TValue, THandler, TLock, TSize >::x_EraseLast(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_ExchangeNodeLocks(), CSGFeatureJob::x_Execute(), CSGAlignStatJob::x_Execute(), CAppTaskService::x_ExecuteNextTaskInQueue(), x_ExpandRange(), CSequenceUpdater::x_ExtendOneEnd(), CPsiBlastInputClustalW::x_ExtractAlignmentData(), CPsiBlastInputData::x_ExtractAlignmentData(), CQuerySplitter::x_ExtractCScopesAndMasks(), CTar::x_ExtractEntry(), CBlastFormatterApp::x_ExtractQueries(), CPsiBlastInputClustalW::x_ExtractQueryForPssm(), CPsiBlastInputData::x_ExtractQueryForPssm(), CCddInputData::x_ExtractQueryForPssm(), CPsiBlastInputClustalW::x_ExtractQueryFromMsa(), CRemoteBlast::x_ExtractQueryIds(), CAuthorEditor::x_ExtractSuffixFromInitials(), CNewCleanup_imp::x_ExtractSuffixFromInitials(), CBlastFastaInputSource::x_FastaToSeqLoc(), CBDB_RawFile::x_FetchBufferDecompress(), CRemoteBlastDbAdapter::x_FetchData(), CRemoteBlastDbAdapter::x_FetchDataByBatch(), CProjectLoadOptionPanel::x_FileMRUList(), CPushback_Streambuf::x_FillBuffer(), CSeqVector_CI::x_FillCache(), CCddInputData::x_FillHitsData(), CFileLoadPanel::x_FillMRUList(), CFileLoadOptionPanel::x_FillMRUList(), CUpdateMultiSeq_Dlg::x_FillNonIdenticalList(), CUpdateMultiSeq_Dlg::x_FillNoUpdateList(), CCddInputData::CHitSegment::x_FillObservations(), CProjectSelectorPanel::x_FillProjectsList(), CCddInputData::CHitSegment::x_FillResidueCounts(), x_FillResidueFrequencies(), CEditObjectFeaturePropagate::x_FillTargetComboList(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_FinalDeleteNode(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_Finalize(), CDiagContext::x_FinalizeSetupDiag(), CSeq_annot_Finder::x_Find(), CUpdateSeqAlignWidget::x_FindAnchorRow(), CDataSource::x_FindBestTSE(), CTSE_Info::x_FindBioObject(), CScope_Impl::x_FindBioseq_Info(), CScope_Impl::x_FindBioseqInfo(), CAlnMap::x_FindClosestSeqPos(), CMultiAligner::x_FindConstraints(), CBlastServices::x_FindDbInfoFromAvailableDatabases(), CIndexDeltaSumCache::x_FindDeltaSum2(), CBioseq_Base_Info::x_FindDesc(), CASN1InputSourceOMF::x_FindDimerEntropy2NA(), CMultiAligner::x_FindDomainHits(), CNCMMReserve::x_FindFreeChain(), CMultiAligner::x_FindInClusterConstraints(), CSeqDBIsam::x_FindIndexBounds(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_FindKeyIndex(), CSeq_id_Textseq_Tree::x_FindMatchByAcc(), CWriteDB_Volume::x_FindNuclLength(), CMultiAligner::x_FindPatternHits(), CSeqDBAtlas::x_FindRegion(), CMultiAligner::x_FindRPSHits(), CSequenceAmbigTrimmer::x_FindWhereToTrim(), CAppJobTask::x_Finish(), CProjectLoadOptionPanel::x_Finish(), CWriteDB_IndexFile::x_Flush(), CTar::x_Flush(), CCgiEntryReaderContext::x_FlushCurrentEntry(), CWriteDB_IsamIndex::x_FlushNumericIndex(), CWriteDB_IsamIndex::x_FlushStringIndex(), CCgiEntry::x_ForceComplete(), CSGGenBankDS::x_ForegroundJob(), CInfoCache< KeyType, DataType >::x_ForgetInfo(), CScopeInfo_Base::x_ForgetTSE(), CCIGAR_Formatter::x_FormatDensegRows(), CSourceFeatureItem::x_FormatGBNoteQuals(), CFeatureItem::x_FormatGOQualCombined(), CSequenceUpdater::x_FormNewAlignment(), CUpdateMultipleSeq_Input::x_FoundMatchesForUpdates(), CSeqDBAtlas::x_Free(), CDockContainer::x_Full_CleanLayoutTreeBranch(), CDockContainer::x_Full_ReduceContainer(), CDockContainer::x_Full_ReduceHiddenContainer_IfNeeded(), CDockContainer::x_Full_RemoveNode(), CDockContainer::x_Full_UnhideContainer_AddChildren(), CFlatGatherer::x_GatherCDSReferences(), CGenomeProjectItem::x_GatherInfo(), CReferenceItem::x_GatherInfo(), CHistComment::x_GatherInfo(), CInfoCache_Base::x_GC(), CUpdateMultipleSeq_Input::x_GenerateUpdateSeqInput(), CSeq_id_Textseq_Tree::x_Get(), CWGSSeqIterator::x_Get4naLengthExact(), x_GetAccountNameBySid(), CHitMatrixDataSource::x_GetAlignedSeqIds(), CAlignmentTrack::x_GetAlignGlyphType(), CAnnotObject_Info::x_GetAlignIter(), CSGAlignmentJob::x_GetAlignments(), CSeqDBIdxFile::x_GetAmb(), CSeqDBVol::x_GetAmbigSeq(), CAnnotTypes_CI::x_GetAnnotSet(), CScope_Impl::x_GetBioseqHandleFromTSE(), CScope_Impl::x_GetBioseqHandlesSorted(), CSplitter::x_GetBottom(), CFastaOstreamEx::x_GetCDSIdString(), CSplitter::x_GetCellIndex(), CAlnMap::x_GetChunks(), CSeqMap::x_GetChunkToLoad(), CDockContainer::x_GetClientsInNode(), CSplitter::x_GetColumn(), SColumn::x_GetColumn(), CCreateGeneModelTask::x_GetCommand(), CId2Reader::x_GetConnection(), CPubseq2Reader::x_GetConnection(), CPubseqReader::x_GetConnection(), CUnculturedTool::x_GetCorrection(), CAlnMultiWidget::x_GetCurrentMethodName(), CPubseq2Reader::x_GetCurrentResult(), CNetBLAST_DMSearchTool::x_GetDataSource(), CBDB_Env::x_GetDeadLockDetect(), CDiagContext::x_GetDefaultHitID(), CShowBlastDefline::x_GetDeflineInfo(), CAlnMultiWidget::x_GetDefMethodName(), CInt4DeltaSumCache::x_GetDeltaSum2(), CInt8DeltaSumCache::x_GetDeltaSum2(), CIndexDeltaSumCache::x_GetDeltaSum2(), CDockContainer::x_GetDockPanel(), CSeq_align_Mapper_Base::x_GetDstDenseg(), CSeq_align_Mapper_Base::x_GetDstExon(), CSeq_align_Mapper_Base::x_GetDstPacked(), CSeq_align_Mapper_Base::x_GetDstSpliced(), CSeq_align_Mapper_Base::x_GetDstStd(), CProjectTreePanel::x_GetExplorerItem(), CAnnotObject_Info::x_GetFeatIter(), CSeqDBColumn::x_GetFileRange(), CGeneGroup::x_GetFirstFeat(), CLinkedFeatsGroup::x_GetFirstFeat(), CAnnotObject_Info::x_GetGraphIter(), CSplitter::x_GetHeight(), CAlnVecRow::x_GetIconsTooltip(), CAlnMultiModel::x_GetItem(), CSimpleStaticTls< V >::x_GetKeyLong(), x_GetLabel_Type(), CAxisRenderer::x_GetLabelValue(), CLinkedFeatsGroup::x_GetLastFeat(), CSplitter::x_GetLeft(), CAlnMap::x_GetLen(), SSeqMapSelector::x_GetLimitTSE(), CWig2tableApplication::x_GetLine(), CLinks::x_GetLink(), CAsn2GffApp::x_GetLocation(), CAsn2FlatApp::x_GetLocation(), CAnnotObject_Info::x_GetLocsIter(), CSeqDBImpl::x_GetMaskDataColumn(), CFastaOstream::x_GetMaskingStates(), CSequenceSearchJob::x_GetMatches(), CTL_Connection::x_GetNativeBlobDescriptor(), CSequenceUpdater::x_GetNewAlign_Replace(), CFastaOstreamComp::x_GetNewFilename(), CSequenceUpdater::x_GetNewSeqLength(), CBioseq_Base_Info::x_GetNextDesc(), CSeqDBImpl::x_GetNumOIDs(), CSeqDBImpl::x_GetNumSeqs(), CSeqDBImpl::x_GetNumSeqsStats(), CSequenceUpdater::x_GetOldBseq_EntryHandle(), CBDB_BlobDictStore< Key, Dictionary, Store >::x_GetOpenDict(), CBDB_BlobDictStore< Key, Dictionary, Store >::x_GetOpenStore(), CGapAnalysis::x_GetOrCreateHistogramBinner(), CProjectViewBase::x_GetOrigObject(), CSeqVector::x_GetPacked2naSeqData(), CSeqVector::x_GetPacked4naSeqData(), CSeqVector::x_GetPacked8SeqData(), CWig2tableApplication::x_GetParamName(), CWig2tableApplication::x_GetParamValue(), CSeq_align_Mapper_Base::x_GetPartialDenseg(), CObjectManager::x_GetPluginManager(), CWig2tableApplication::x_GetPos(), x_GetProfileMatchRanges(), CFastaOstreamEx::x_GetProtIdString(), CCompareSeqRegions::x_GetPutativeMatches(), CBlastDBCmdApp::x_GetQueries(), SIdAnnotObjs::x_GetRangeMap(), CAlnMap::x_GetRawSegType(), SegMaskerApplication::x_GetReader(), CGBDataLoader::x_GetReaderManager(), CAlnMultiModel::x_GetRecordByRow(), CGBDataLoader::x_GetRecords(), CSeqDBAtlas::x_GetRegion(), CUnculturedTool::x_GetReply(), CSplitter::x_GetRight(), CFastaOstreamEx::x_GetRNAIdString(), CSplitter::x_GetRow(), CAlnMultiModel::x_GetRowByLine(), CAlnMultiRenderer::x_GetRowTooltip(), CSeqMap::x_GetSegment(), CWGSSeqIterator::x_GetSegments(), CSelListModelImpl< Item >::x_GetSelectedItems(), CSeq_align_Handle::x_GetSeq_align(), CSeq_graph_Handle::x_GetSeq_graph(), CHitMatrixDataSource::x_GetSeqAlignIds(), CDataSource::x_GetSeqMatch(), CSparseAln::x_GetSeqVector(), CLDS2_Database::x_GetStatement(), CPsiBlastInputData::x_GetSubjectSequence(), CFlatFileFeatureCollapsed::x_GetText(), CSplitter::x_GetTop(), CSeq_id_Mapper::x_GetTree(), CAnnot_Collector::x_GetTSE_Info(), CScope_Impl::x_GetTSE_Lock(), CScopeInfo_Base::x_GetTSE_ScopeInfo(), CProjectView::x_GetUndoManager(), CMakeBlastDBApp::x_GetUserInputTypeHint(), CViewManagerService::x_GetViewRegistryPath(), CSplitter::x_GetWidth(), CWig2tableApplication::x_GetWord(), CGBDataLoader::x_GetWriterManager(), CNGAlignTool::x_GoNextPage(), CNGAlignTool::x_GoPrevPage(), CSyncQueue< Type, Container, Traits >::x_GuardedUnlock(), CPssmEngine::x_GuardProteinQuery(), CWindowManager::x_HandlePanelCommand(), CBioseqContext::x_HasParts(), CAlnMultiHeaderHandler::x_HitTest(), CTextSelHandler::x_HitTest(), CLinearSelHandler::x_HitTest(), CAlignMarkHandler::x_HitTest(), CAlnStats< _TAlnIdVec >::x_IdentifyPotentialAnchors(), CThreadPool_ServiceThread::x_Idle(), CFeatureItem::x_ImportQuals(), CTSE_Info::x_IndexBioseq(), CTSE_Info::x_IndexBioseq_set(), CDataSource::x_IndexTSE(), CBlastTracebackSearch::x_Init(), CConn_Streambuf::x_Init(), CBlastRPSInfo::x_Init(), CSDB_DeadlockException::x_Init(), CAlnSpanVertModel::x_Init(), CSeq_align_Mapper_Base::x_Init(), CBioseqContext::x_Init(), CIdMapperScope::x_Init(), CSearchResultSet::x_Init(), CSeq_id::x_Init(), CTar::x_Init(), CCgiRequest::x_Init(), CLoadLockSetter::x_Init(), CTime::x_Init(), CNCBIwxApplication::x_Init_wxApplication(), CSeq_loc_Mapper_Base::x_InitAlign(), CSeq_annot_Info::x_InitAlignKeys(), CSeq_annot_Info::x_InitAlignList(), CSeq_annot_Info::x_InitAnnotList(), CScope_Impl::x_InitBioseq_Info(), CBlastScopeSource::x_InitBlastDatabaseDataLoader(), CBlastDbMetadata::x_InitBlastDb(), CBl2Seq::x_InitCLocalBlast(), CShowBlastDefline::x_InitDefline(), CSDB_DeadlockException::x_InitErrCode(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatList(), CSeq_annot_Info::x_InitFeatTable(), CSeq_annot_Info::x_InitFeatTableKeys(), CGeneModelTrack::x_InitFeature_Recursive(), CSeq_loc_Mapper::x_InitGCSequence(), CLDS2_Database::x_InitGetBioseqsSql(), CSeq_annot_Info::x_InitGraphKeys(), CSeq_annot_Info::x_InitGraphList(), CSeq_annot_CI::x_Initialize(), CAnnot_CI::x_Initialize(), CAnnot_Collector::x_Initialize(), CSearchDatabase::x_InitializeDb(), CSeq_loc_Mapper_Base::x_InitializeFeat(), CHistogramBinning::x_InitializeHistogramAlgo(), CPssmEngine::x_InitializeScoreBlock(), CSeq_loc_Mapper::x_InitializeSeqMapSingleLevel(), CSeq_loc_Mapper::x_InitializeSeqMapUp(), CThread::x_InitializeThreadId(), CAnnotType_Index::x_InitIndexTables(), CSparseIterator::x_InitIterator(), CSeq_annot_Info::x_InitLocsKeys(), CSeq_annot_Info::x_InitLocsList(), CWorkbench::x_InitMainFrame(), CTSE_Chunk_Info::x_InitObjectIndexList(), CMultiAligner::x_InitParams(), CRemoteBlast::x_InitQueries(), CSGAlignmentDS::x_InitScoringMethods(), CSparse_CI::x_InitSegment(), CDenseg_CI::x_InitSegment(), CPairwise_CI::x_InitSegment(), CSeq_loc_Mapper_Base::x_InitSparse(), CDotMatrixView::x_InitWidget(), CAlignSpanView::x_InitWidget(), CSelectionControl::x_InsertItems(), CDockContainer::x_InstantiateNode(), CDockContainer::x_InstantiateNode_AddChildWindows(), CTSE_ScopeInfo_Base::x_InternalUnlockTSE(), CConn_IOStream::x_IsCanceled(), CMacroFunction_IsPresent::x_IsContainerElementPresent(), CBioseqContext::x_IsDeltaLitOnly(), CBioseq_Base_Info::x_IsEndNextDesc(), CLinks::x_IsLinkPtr(), CBioseqContext::x_IsPart(), CSeqDBOIDList::x_IsSet(), CClusterer::x_JoinClustElem(), CClusterer::x_JoinClusters(), CClusterer::x_JoinElements(), CProjectTask::x_LaunchProjectLoadingTask(), CAlnMultiRenderer::x_Layout(), CAlnMultiRenderer::x_LayoutColumns(), CMetaRegistry::x_Load(), CTSE_Chunk_Info::x_LoadAnnot(), CTSE_Chunk_Info::x_LoadAssembly(), CTSE_Chunk_Info::x_LoadBioseq(), SDataLoaderConfig::x_LoadBlastDbDataLoaderConfig(), CLDS2_DataLoader::x_LoadBlobs(), CSplitDataLoader::x_LoadData(), CBlastDbDataLoader::x_LoadData(), CTSE_Chunk_Info::x_LoadDescr(), CSnpFilterUI::x_LoadFilter(), CSGSegmentSmearJob::x_LoadFromNetCache(), seqmasks_io_fixture::x_LoadMaskedBioseq(), CSeqMap::x_LoadObject(), CNGAlignTool::x_LoadPage(), CSeqDBIsam::x_LoadPage(), CCSRARefSeqInfo::x_LoadRangesStat(), CTSE_Chunk_Info::x_LoadSeq_entry(), CTSE_Chunk_Info::x_LoadSequence(), CGraphTrack::x_LoadSettings(), CLDS2_DataLoader::x_LoadTSE(), CTSE_Lock::x_Lock(), CInfoManager::x_LockInfoMutex(), CTSE_ScopeInfo_Base::x_LockTSE(), CDataSource::x_LockTSE(), CAutodefJob::x_MakeChanges(), CMultiAligner::x_MakeClusterResidueFrequencies(), CMultiAligner::x_MakeFillerBlocks(), CPromote::x_MakeNewBioseq(), CSeq_loc_Mapper_Base::x_MapSeq_loc(), CFeatureSearchJob::x_Match(), CFeature_table_reader_imp::x_MatchingParenPos(), CAnnot_Collector::x_MatchLimitObject(), CRWLock::x_MayAcquireForReading(), CTraversalCodeGenerator::x_MemberVarNameToArg(), x_memcpy(), CAlnMixMerger::x_Merge(), x_MergeNoSort(), CMergeVolumes::x_MergeVolume(), CConn_Streambuf::x_Message(), CLinearSelHandler::x_MouseToSeqPos(), CAlignMarkHandler::x_MouseToSeqPos(), CAlnMultiHeaderHandler::x_MoveColumn(), CAlnMultiHeaderHandler::x_MoveColumnSeparator(), CAnnotObject_Info::x_MoveToBack(), CDockManager::x_MoveToFloatingFrame(), CLayoutTrackHandler::x_MoveTrackDownRecursive(), CLayoutTrackHandler::x_MoveTrackUpRecursive(), CBamRawAlignIterator::x_NeedToSkip(), CSeq_descr_CI::x_Next(), CSeq_entry_CI::x_Next(), CBioseqGaps_CI::x_Next(), CBamRawAlignIterator::x_NextAnnot(), CSeqVector_CI::x_NextCacheSeg(), CSeqdesc_CI::x_NextDesc(), CSeq_loc_Mapper_Base::x_NextMappingRange(), CBlastSearchTask::x_NextSubTask(), CAlnMultiHeaderHandler::x_NextVisibleColumn(), x_NormalizeResidueFrequencies(), CNetBlastJobDescriptor::x_NotifyDataSource(), CLoadLockBlob::x_ObtainTSE_LoadLock(), CLoadLockSetter::x_ObtainTSE_LoadLock(), CNCMMReserve::x_OccupyChain(), CMultiFileInput::x_OnAddFilenames(), CTableSortMultiChoice::x_OnAddLevels(), CAnnotCompareDS::x_OnAppJobNotification(), CSnpFilterUI::x_OnBtnSave(), CConn_Streambuf::x_OnClose(), CMinimapHandler::x_OnEndMinimap(), CMouseZoomHandler::x_OnEndScale(), CLayoutTrack::x_OnIconClicked(), CGraphTrack::x_OnJobCompleted(), CJobAdapter::x_OnJobNotification(), CSUCRefreshCntrl::CSUCRefreshCntrlHelper::x_OnJobNotification(), CBLASTDatabases::x_OnJobNotification(), CSUCTableView::x_OnJobNotification(), CValidateTableView::x_OnJobNotification(), CFeatTableDS::x_OnJobNotification(), CAppJobDispatcher::x_OnJobStarted(), CAppJobDispatcher::x_OnJobStateChanged(), CAlignmentTrack::x_OnLayoutPolicyChanged(), CFeatureTrack::x_OnLayoutPolicyChanged(), CGroupMapWidget::x_OnMakeDefaultItem(), CStatusBarService::x_OnNewRecord(), CAlnMultiPane::x_OnRowMouseEvent(), CLinearSelHandler::x_OnSelectCursor(), CwxChooseSeqDlg::x_OnSelectionChanged(), CDotMatrixView::x_OnSetSelection(), CMultiAlignView::x_OnSetSelection(), CGraphTrack::x_OnSettingsIconClicked(), CProjectView::x_OnShowPopupMenu(), CAppTaskService::x_OnTaskCanceled(), CGroupMapWidget::x_OnToggleGroup(), CAppTaskService::x_OnWakeUpSignal(), CProjectView::x_OnWidgetItemActivated(), CProjectView::x_OnWidgetRangeChanged(), CProjectView::x_OnWidgetSelChanged(), CSubPrepView::x_OnWrapSeq_submit(), CEditingBtnsView::x_OnWrapSeq_submit(), CRegexpTemplateTester::x_Op_Include(), CRegexpTemplateTester::x_Op_Set(), CRegexpTemplateTester::x_Op_Skip(), CRegexpTemplateTester::x_Op_Test(), CArg_InputFile::x_Open(), CArg_OutputFile::x_Open(), CArg_IOFile::x_Open(), CBDB_RawFile::x_Open(), CTar::x_Open(), CGlPane::x_Open_SetViewport(), CSQLITE_Blob::x_OpenBlob(), CUIDataSourceService::x_OpenDataSources(), CFastaReader::x_OpenMask(), CSeqDBIsam::x_OutOfBounds(), CDisplaySeqalign::x_OutputSeq(), CTar::x_PackName(), CAmbigDataBuilder::x_PackNewAmbig(), CAmbigDataBuilder::x_PackOldAmbig(), CSeq_entry_Info::x_ParentAttach(), CBioseq_set_Info::x_ParentAttach(), CBioseq_Info::x_ParentAttach(), CMacroParser::x_Parse_Do(), CMacroFunction_ParseStringQual::x_ParseFields(), CLDS2_Manager::x_ParseFile(), CConn_HttpStream::x_ParseHeader(), CConn_ServiceStream::x_ParseHeader(), x_ParseSNP_Info(), CGFFReader::x_ParseV2Attributes(), CRegexpTemplateTester::x_ParseVarName(), CSequenceUpdater::x_PatchSequence(), CTraversalPatternMatchCallback::x_PatternMatches(), CSeqDBMapStrategy::x_Pick(), CBDB_Cache::x_PidLock(), CAlignedFeatureGraph::x_PlaceCluster(), CJsonOverUTTPWriter::x_PopNode(), CAlnSpanVertModel::x_PopulateRows(), CRNAPanel::x_PopulateTranscriptID(), CCrossAlignView::x_PostAttachToProject(), CArgDescriptions::x_PreCheck(), CSQLITE_Statement::x_Prepare(), CDisplaySeqalign::x_PrepareRowData(), CSeqVector_CI::x_PrevCacheSeg(), CBlastDBCmdApp::x_PrintBlastDatabaseInformation(), CBlastTabularInfo::x_PrintField(), CBlastTabularInfo::x_PrintFieldNames(), CGapStatsApplication::x_PrintHistogram(), CSequenceUpdater::x_PrintNewEntryIds(), CBlastTabularInfo::x_PrintQueryAndDbNames(), CFastaOstream::x_PrintStringModIfNotDup(), CGapStatsApplication::x_PrintSummaryView(), CBlastFormat::x_PrintXML2Report(), CAgpFastaComparator::x_Process(), CExportStrategy::x_Process_Query(), CExportStrategy::x_Process_SearchDb(), CXcompareAnnotsApplication::x_ProcessComparison(), CId2FetchApp::x_ProcessData(), CPsiBlastInputData::x_ProcessDenseg(), CId2ReaderBase::x_ProcessGetBlob(), CId2ReaderBase::x_ProcessGetSplitInfo(), CSeq_loc_CI_Impl::x_ProcessInterval(), CBlastOptionsBuilder::x_ProcessOneOption(), CSeq_loc_CI_Impl::x_ProcessPoint(), CBlastDBCmdApp::x_ProcessSearchRequest(), CPromote::x_PromoteCdregion(), CPromote::x_PromoteRna(), CPssmEngine::x_PSIMatrix2Asn1(), CWriteDB_Impl::x_Publish(), CSeqMap_CI::x_Push(), CRWStreambuf::x_pushback(), CStreamUtils::x_Pushback(), CBioseq_CI::x_PushEntry(), CSeq_loc_Mapper_Base::x_PushLocToDstMix(), CBDB_LobFile::x_Put(), CDiagSyntaxParser::x_PutIntoFilter(), CBlastFormatterApp::x_QueryBioseqToSSeqLoc(), CAmbigDataBuilder::x_Random(), SIdAnnotObjs::x_RangeMapIsEmpty(), CArchive::x_ReadAndProcess(), CTar::x_ReadAndProcess(), CTar::x_ReadArchive(), CPsiBlastInputClustalW::x_ReadAsciiMsa(), CBGZFStream::x_ReadBlock(), CWigBufferedLineReader::x_ReadBuffer(), CBufferedLineReader::x_ReadBuffer(), CBDB_ExtBlobStore< TBV >::x_ReadCache(), CTar::x_ReadEntryInfo(), CGapStatsApplication::x_ReadFileOrAccn(), CBlastDbBlob::x_ReadIntFixed(), CSeqDBColumn::x_ReadMetaData(), CSraInputSource::x_ReadOneSeq(), CBlastDbBlob::x_ReadRaw(), CPhrapReader::x_ReadRead(), CFastaReader::x_ReadSegSet(), CFastaReader::x_ReadSeqsToAlign(), CTransmissionReader::x_ReadStart(), CUIToolRegistry::x_ReadToolInfo(), CSeqDBAliasNode::x_ReadValues(), CMultiAligner::x_RealignBlocks(), CSeq_align_Handle::x_RealRemove(), CSeq_graph_Handle::x_RealRemove(), CSeq_feat_EditHandle::x_RealRemove(), CSeq_align_Handle::x_RealReplace(), CSeq_graph_Handle::x_RealReplace(), CSeq_feat_EditHandle::x_RealReplace(), CMultiAlignView::x_RebuildObjectIndex(), CSeqMap_CI::x_RefTSEMatch(), CWindowManager::x_RegisterClient(), CGlWidgetPane::x_RegisterHandler(), CObjectManager::x_RegisterLoader(), CFeatureTrack::x_RegroupFeats(), CDataSource::x_ReleaseLastTSELock(), CInfoManager::x_ReleaseLoadMutex(), CMouseZoomHandler::x_ReleaseMouse(), CMetaRegistry::x_Reload(), CTSE_Lock::x_Relock(), CRemoteSeqSearch::x_RemoteBlast(), CSeqdesc_CI::x_RemoveChoice(), CReader::x_RemoveConnection(), CInfoCache_Base::x_RemoveFromGCQueue(), CScope_Impl::x_RemoveFromHistory(), CAppJobDispatcher::x_RemoveJobRecord(), CSequenceUpdater::x_RemoveNewIDInFeature(), CAlnVecRow::x_RenderAlign(), CTraceGraph::x_RenderConfGraph(), CTraceGraph::x_RenderCurveSegment(), CAlnVecRow::x_RenderDescr(), CHitMatrixGraph::x_RenderEventHandler(), CAlignedFeatureGraph::x_RenderFeature(), CFeaturePanel::x_RenderHairLineSelections(), CAlnVecRow::x_RenderIconExpand(), CAlnVecRow::x_RenderIcons(), CAlnVecRow::x_RenderIconStrand(), CTraceGraph::x_RenderIntensityGraphs(), CAlnMultiHeaderHandler::x_RenderMoveMode(), CTextSelHandler::x_RenderOpSymbol(), CTextSelHandler::x_RenderRange(), CRuler::x_RenderRange(), CAlnMultiRenderer::x_RenderRow(), CRuler::x_RenderScale(), IPhyloTreeRender::x_RenderSelection(), CSequenceTextGraph::x_RenderSequence(), CAlnVecRow::x_RenderSequence(), CTraceGraph::x_RenderSignalGraph(), CAlnVecRow::x_RenderTaxLabel(), CAlnVecRow::x_RenderTextCell(), CPhyloSlantedCladogram::x_RenderVbo(), CPhyloRadial::x_RenderVbo(), CPhyloRectCladogram::x_RenderVbo(), CPhyloCircularCladogram::x_RenderVbo(), CPhyloRectCladogram::x_RenderVboPseudoSplines(), CPhyloRectCladogram::x_RenderVboSplines(), CXmlValueItem::x_RenderXml(), CValidError_bioseq::x_ReportDuplicatePubLabels(), CAppJobTask::x_ReportError(), CSeqdesc_CI::x_RequestedType(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CDataSource::x_ResetDirtyAnnotIndex(), CFileDiagHandler::x_ResetHandler(), CScopeInfo_Base::x_ResetLock(), CTSE_ScopeInfo::x_ResetTSE_Lock(), CSeqVector_CI::x_ResizeCache(), CSplitter::x_ResizeToCell(), CScope_Impl::x_ResolveSeq_id(), CTSE_ScopeInfo::x_RestoreAdded(), CSeqDBAtlas::x_RetRegionNonRecent(), CObjectManager::x_RevokeDataLoader(), CRegionMap::x_Roundup(), CAppTask::x_Run(), CNetBlastSubmittingJob::x_Run(), CProjectTask::x_Run(), CCreateGeneModelTask::x_Run(), CVecscreenRun::x_RunBlast(), CPsiBlastApp::x_RunLocalPsiBlastIterations(), CSplign::x_RunOnCompartment(), CDBLBClientApp::x_RunWhatIs(), CDBLBClientApp::x_RunWhereIs(), CDBAPI_CacheIWriter::x_SaveBlob(), CGBDocument::x_SaveFile(), CTSE_ScopeInfo::x_SaveRemoved(), CViewGraphic::x_SaveViewSettings(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_ScanForInsertSpace(), CSeqDBImpl::x_ScanTotals(), CAnnot_Collector::x_SearchAll(), CSeqDBIsam::x_SearchDataNumeric(), CSeqDBIsam::x_SearchIndexNumeric(), CAnnot_Collector::x_SearchLoc(), CSeqDBIsam::x_SearchNegativeMulti(), CAnnot_Collector::x_SearchRange(), CAnnot_Collector::x_SearchSegments(), CAlnMixMerger::x_SecondRowFits(), CSequenceAmbigTrimmer::x_SegmentGetEndInclusive(), CLoadLockSetter::x_SelectChunk(), CScope_Impl::x_SelectSeq(), CScope_Impl::x_SelectSet(), CTL_Connection::x_SendData(), CTL_Connection::x_SendUpdateWrite(), ILayoutPolicy::x_SeparateObjects(), CSequenceAmbigTrimmer::x_SeqMapIterDoNext(), CMemoryRegistry::x_Set(), CStaticArraySearchBase< NStaticArray::PKeyValuePair< pair< KeyType, ValueType > >, KeyCompare >::x_Set(), CBioseq_Base_Info::x_SetAnnot(), CSeq_entry_Info::x_SetBioseqChunkId(), CTSE_Info::x_SetBioseqId(), CTSE_Info::x_SetBioseqIds(), CDockPanel::x_SetClient(), CFeatureGenerator::SImplementation::x_SetCommentForGapFilledModel(), CPubseq2Reader::x_SetCurrentResult(), CMacroBioData_SeqSetIter::x_SetDefaultObjectInfo(), CWGSSeqIterator::x_SetDelta(), CWGSSeqIterator::x_SetDeltaOrData(), CDataSource::x_SetDirtyAnnotIndex(), CMultiAligner::x_SetDomainHits(), CSeqDBExtFile::x_SetFileType(), CDeflineGenerator::x_SetFlags(), CMacroEngine::x_SetFunctions(), CWriteDB_Impl::x_SetHaveSequence(), CTSE_Info::x_SetIdObjects(), CUrlArgs_Parser::x_SetIndexString(), CInfoRequestorLock::x_SetLoadedFor(), CDataSource::x_SetLoadLock(), CDataSource::x_SetLock(), CScopeInfo_Base::x_SetLock(), CBioseqContext::x_SetMapper(), CRemoteBlast::x_SetMaskingLocationsForQueries(), CDataSource_ScopeInfo::x_SetMatch(), CCompoundRegistry::x_SetModifiedFlag(), CMacroFunction_SetStringQual::x_SetNewPrimitiveValue(), CFeatTree::x_SetNoParent(), CSeq_annot_Info::x_SetObject(), CBioseq_set_Info::x_SetObject(), CSeq_entry_Info::x_SetObject(), CBioseq_Info::x_SetObject(), CMacroFunction_SetPubField::x_SetObjects_Affil(), CMacroFunction_SetPubField::x_SetObjects_Date(), CRemoteBlast::x_SetOneParam(), CFeatTree::x_SetParent(), CSeqVector_CI::x_SetPos(), CBDB_FileDumper::x_SetQuoteFlags(), CAlnMap::x_SetRawSegTypes(), CId2ReaderBase::x_SetResolve(), CAlnMultiWidget::x_SetScoringMethod(), CSeqMap::x_SetSegment(), CPromote::x_SetSeqFeatProduct(), CAgpToSeqEntry::x_SetSeqGap(), CSeq_annot_Info::x_SetSNP_annot_Info(), CBlastSeqVectorOM::x_SetStrand(), CSeq_descr_CI::x_Settle(), CSeq_annot_CI::x_Settle(), CTSE_ScopeInfo::x_SetTSE_Lock(), CInfoCache_Base::x_SetUnused(), CUpdateSeq_Panel::x_SetupAlnMultiWidget(), CODBC_Connection::x_SetupErrorReporter(), CNcbiApplication::x_SetupStdio(), CInfoCache_Base::x_SetUsed(), CSequenceUpdater::x_ShouldRemoveFeature(), CGlWidgetBase::x_ShowDecoratedPopupMenu(), CFrameworkDemoGUI::x_ShowSingletonView(), CWindowManagerService::x_ShowToolBar(), CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::x_ShrinkTree(), CSelectionEvent::x_SimpleMatch(), CTar::x_Skip(), CStrTokenizeBase::x_SkipDelims(), CWig2tableApplication::x_SkipWS(), CAnnot_Collector::x_Sort(), CSplitter::x_Split(), CSplitDataLoader::x_SplitAligns(), CTSE_Chunk_Info::x_SplitAttach(), CNewCleanup_imp::x_SplitDbtag(), CSplitDataLoader::x_SplitFeats(), CSplitDataLoader::x_SplitGraphs(), CBlastFormat::x_SplitSeqAlign(), CLayoutTrackHandler::x_StartMoving(), CNetBlastMonitoringJob::x_StartRetrivingTask(), SGridWorkerNodeImpl::x_StartWorkerThreads(), CLayoutTrackHandler::x_StopMoving(), CBDB_Cache::x_Store(), CMergeVolumes::x_StoreMerger(), CSeqDBVol::x_StringToOids(), x_SubNoSort(), CSeqDBIdSet::x_SummarizeBooleanOp(), CMouseZoomHandler::x_SwitchToActiveState(), CAlnMultiHeaderHandler::x_SwitchToMoveMode(), CMinimapHandler::x_SwitchToReadyState(), CMouseZoomHandler::x_SwitchToReadyState(), CAlnMultiHeaderHandler::x_SwitchToResizeMode(), CMinimapHandler::x_SwithToActiveState(), CScoreCache::x_TransferResults(), CTraversalPatternMatchCallback::x_TranslateArgToNode(), CHistogramBinning::x_TryForEvenBins(), CWig2tableApplication::x_TryGetDouble(), CWig2tableApplication::x_TryGetDoubleSimple(), CTSE_Info_Object::x_TSEAttach(), CTSE_Chunk_Info::x_TSEAttach(), CTSE_Info_Object::x_TSEAttachContents(), CSeq_annot_Info::x_TSEAttachContents(), CBioseq_set_Info::x_TSEAttachContents(), CTSE_Info_Object::x_TSEDetach(), CTSE_Info_Object::x_TSEDetachContents(), CPhrapReader::x_UngetTag(), CSeq_id_int_Tree::x_Unindex(), CSeq_id_Textseq_Tree::x_Unindex(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CSeq_id_Giim_Tree::x_Unindex(), CSeq_id_Patent_Tree::x_Unindex(), CSeq_id_PDB_Tree::x_Unindex(), CTSE_ScopeInfo::x_UnindexBioseq(), CNCMMReserve::x_Unlink(), CGBDocument::x_UnloadData(), CTSE_Lock::x_Unlock(), CInfoManager::x_UnlockInfoMutex(), CTSE_Info::x_UnmapAnnotObject(), CTSE_Info::x_UnmapFeatById(), CBDB_Cache::x_UpdateAccessTime(), CTSE_Info::x_UpdateAnnotIndexContents(), CRsitesGlyph::x_UpdateBoundingBox(), CCommentGlyph::x_UpdateBoundingBox(), CGraphOverlay::x_UpdateBoundingBox(), CSegmentGlyph::x_UpdateBoundingBox(), CGraphTrack::x_UpdateBoundingBox(), CClonePlacementGlyph::x_UpdateBoundingBox(), CLinkedFeatsGroup::x_UpdateBoundingBox(), CFeatGlyph::x_UpdateBoundingBox(), CScoringJob::x_UpdateBuffer(), CSeqVector_CI::x_UpdateCacheDown(), CSeqVector_CI::x_UpdateCacheUp(), CGraphOverlay::x_UpdateContainerParams(), CProjectViewBase::x_UpdateContentLabel(), CUpdateSeq_Panel::x_UpdateControls(), CCache< TKey, TValue, THandler, TLock, TSize >::x_UpdateElement(), CSequenceSearchForm::x_UpdateFileList(), CCreateGeneModelTask::x_UpdateGeneOnSequence(), COrfSearchForm::x_UpdateKozak(), CGraphOverlay::x_UpdateLegend(), CRuler::x_UpdateMappingByPane(), CStatusBarService::x_UpdateMessageField(), CSeq_annot_Info::x_UpdateObjectKeys(), CHitMatrixDataSource::x_UpdateScoreMap(), CSeqVector_CI::x_UpdateSeg(), CRequestContext::x_UpdateSubHitID(), CWindowsDlg::x_UpdateTable(), CGraphOverlay::x_UpdateTrackSettings(), CTSE_ScopeInfo_Base::x_UserUnlockTSE(), CCddInputData::x_ValidateHits(), CBlastInputReader::x_ValidateMoleculeType(), CCddInputData::x_ValidateMsa(), CPsiBlastInputClustalW::x_ValidateQueryInMsa(), CSeqdesc_CI::x_ValidDesc(), CSeq_entry_CI::x_ValidType(), CFeatTree::x_VerifyLinkedToRoot(), CAppJobDispatcher::x_VerifyProgressNotNull(), CDockContainer::x_Visible_AddChildToContainer(), CDockContainer::x_Visible_RemoveNode(), CDockContainer::x_Visible_ReplaceChildWithContainer(), CDockContainer::x_Visible_ReplaceContainerWithChild(), CInfoManager::x_WaitForOtherLoader(), CNamedPipeHandle::x_WaitForRead(), CTar::x_WriteArchive(), CTar::x_WriteEntryInfo(), CVcfWriter::x_WriteFeatureGenotypeData(), CBlastDbBlob::x_WriteIntFixed(), CBlastDbBlob::x_WriteIntFixed_LE(), CBDB_CacheIWriter::x_WriteOverflow(), CBlastDbBlob::x_WriteRaw(), CFastaOstream::x_WriteSequence(), CSGSegmentSmearJob::x_WriteToCache(), CBlastDbBlob::x_WriteVarInt(), CResultSet::xGetBlobOStream(), CWiggleReader::xMakeGraph(), xSetAlignment(), xSetAttributes(), xSetId(), xSetLocation(), xSetMethod(), xSetScores(), xSetType(), CConn_Streambuf::xsgetn(), CRWStreambuf::xsgetn(), CConn_Streambuf::xsputn(), CRWStreambuf::xsputn(), CGff3Writer::xWriteAlignSpliced(), CTime::YearDayNumber(), CGlPane::ZoomPoint(), CAsyncDiagHandler::~CAsyncDiagHandler(), CBDB_RawFile::~CBDB_RawFile(), CBioseq_ScopeInfo::~CBioseq_ScopeInfo(), CCache< TKey, TValue, THandler, TLock, TSize >::~CCache(), python::CConnection::~CConnection(), CCounter::~CCounter(), CDataSource_ScopeInfo::~CDataSource_ScopeInfo(), CDemoHandler_EmptyOnOverflow::~CDemoHandler_EmptyOnOverflow(), CDemoHandler_MemSize::~CDemoHandler_MemSize(), CDockManager::~CDockManager(), CEffectiveSearchSpacesMemento::~CEffectiveSearchSpacesMemento(), CFastaReader::~CFastaReader(), CHookDataBase::~CHookDataBase(), CInitMutex_Base::~CInitMutex_Base(), CMemStore::~CMemStore(), CMiniMutex::~CMiniMutex(), CNCMMBlocksSet::~CNCMMBlocksSet(), CNCMMSizePool::~CNCMMSizePool(), CNetBLASTUIDataSource::~CNetBLASTUIDataSource(), CObject::~CObject(), CObjectHookGuardBase::~CObjectHookGuardBase(), CObjectManager::~CObjectManager(), CObjectPool< C >::~CObjectPool(), CProjectView::~CProjectView(), CQuickAndDirtySamePointerGuard< T >::~CQuickAndDirtySamePointerGuard(), CReaderAllocatedConnection::~CReaderAllocatedConnection(), CReaderRequestResult::~CReaderRequestResult(), CReaderRequestResultRecursion::~CReaderRequestResultRecursion(), CScopeInfo_Base::~CScopeInfo_Base(), CSemaphore::~CSemaphore(), CSeq_id_Gi_Tree::~CSeq_id_Gi_Tree(), CSeq_id_Info::~CSeq_id_Info(), CSeq_id_Mapper::~CSeq_id_Mapper(), CSeq_loc_Conversion::~CSeq_loc_Conversion(), CSeqDBAtlas::~CSeqDBAtlas(), CSeqDBMemLease::~CSeqDBMemLease(), CSeqMap::~CSeqMap(), CSQLITE3_Cache::~CSQLITE3_Cache(), CSrvTask::~CSrvTask(), CTempPusher< TStack >::~CTempPusher(), CTreeNode< TValue, TKeyGetter >::~CTreeNode(), CTSE_Info::~CTSE_Info(), CTSE_ScopeInfo::~CTSE_ScopeInfo(), and CTypeInfoSource::~CTypeInfoSource().

#define _TROUBLE   do { assert(0); abort(); } while (0)

Definition at line 153 of file test_assert_impl.h.

Referenced by CCgiCookies::Add(), IFlatTextOStream::AddLine(), IFlatTextOStream::AddParagraph(), CArchive::AppendFileFromMemory(), IRWRegistry::AssessImpact(), CTL_Cmd::AssignCmdParam(), CTimeSpan::AssignFromSmartString(), CDirEntry::Backup(), CArchive::CArchive(), CArgDescMandatory::CArgDescMandatory(), NStr::CEncode(), ctransition_ErrMessage(), CDiffText::Diff(), FrameNumber2NetworkFrame(), g_Diag_Use_RWLock(), g_FloatingPoint_Compare(), CDB_String::GetBulkInsertionData(), CCgiUserAgent::GetEngineName(), CBDB_StrErrAdapt::GetErrCode(), CHTMLNode::GetEventHandlerName(), CAgpFastaComparator::CTmpSeqVecStorage::GetFileName(), CTL_RowResult::GetItemInternal(), ICitationBase::GetLabel(), CCgiUserAgent::GetPlatformName(), CCgiRequest::GetPropertyName(), CReportObject::GetTextObjectDescription(), CArgDescriptions::GetTypeName(), CAgpconvertApplication::CCustomErrorHandler::HandleError(), MapAcfToSdf(), MemoryAdvise(), CDirEntry::ModeToString(), NStr::NeedsURLEncoding(), NetworkFrame2FrameNumber(), Nlm_rule_line(), CFileIO::Open(), CSeqportUtil_implementation::Pack(), CArgDescMandatory::ProcessArgument(), CTL_RowResult::ReadItem(), CNcbiApplogApp::Run(), CGapStatsApplication::Run(), CGapStatsApplication::RunNoCatch(), s_BuiltInSM(), s_GetSymbolClass(), s_GetUsageSymbol(), s_IsAllowedSymbol(), s_TranslateAttrs(), s_URLDecode(), CTL_SendDataCmd::SendChunk(), CFileIO::SetFilePos(), CArchive::SetMask(), CDiagContextThreadData::SetRequestContext(), NDirectNetStorageImpl::CObj::StartWrite(), CNetCacheWriter::Transmit(), NStr::URLEncode(), CArchive::x_Append(), CDB_Stream::x_Append(), CCgiCookies::x_CheckField(), CCgiUserAgent::x_CheckPattern(), CCgiEntryReaderContext::x_DelimitedRead(), CTwoLayerRegistry::x_Enumerate(), CTar::x_ExtractEntry(), CRegexpTemplateTester::x_GetLine(), CSDB_ConnectionParam::x_GetName(), CSourceModParser::x_HandleBadModValue(), CArchive::x_Open(), CTar::x_Open(), CGFFReader::x_ParseV2Attributes(), CGapStatsApplication::x_PrintOutMessage(), CGapStatsApplication::x_PrintSeqsForGapLengths(), CGapStatsApplication::x_PrintSummaryView(), CArchive::x_ReadAndProcess(), CTar::x_ReadEntryInfo(), CCgiEntryReaderContext::x_ReadMultipartHeaders(), CDeflineGenerator::x_SetFlags(), and CSeqDBIsam::x_SparseStringToOids().

#define Type   aType

Function Documentation

static LONG CALLBACK _SEH_Handler ( EXCEPTION_POINTERS *  ep)
static

Definition at line 62 of file test_assert_impl.h.

Referenced by _SuppressDiagPopupMessages().

static int _SuppressDiagPopupMessages ( void  )
static

Definition at line 68 of file test_assert_impl.h.

References _SEH_Handler(), and value.

Variable Documentation

int(* _SDPM) (void) = _SuppressDiagPopupMessages
static

Definition at line 105 of file test_assert_impl.h.

Modified on Fri Aug 26 18:15:59 2016 by modify_doxy.py rev. 506947