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Definition at line 148 of file test_assert_impl.h.
Referenced by Abort(), CObjectManager::AcquireDataLoader(), CNCBlobLockHolder::AcquireLock(), CInitMutexPool::AcquireMutex(), CObjectManager::AcquireSharedBioseq(), CObjectManager::AcquireSharedSeq_annot(), CObjectManager::AcquireSharedSeq_entry(), CWindowManagerService::ActivateClient(), CDockContainer::ActivateClients(), CWindowManagerService::ActivateClients(), SChunkInfo::Add(), CSeq_annot_Info::Add(), CDBUDRandomMapper::Add(), CFilterSet2::Add(), CPluginReply::AddAction(), CTSE_ScopeInfo::AddAnnot(), CBioseq_Base_Info::AddAnnot(), CCgiEntries_Parser::AddArgument(), CCgiArgs::AddArgument(), CLoadInfoBlob_ids::AddBlob_id(), AbstractLexer::AddChars(), CBLAST_Dlg_Item::AddChild(), CProjectFolder::AddChildFolder(), CProjectFolder::AddChildItem(), CTSE_Split_Info::AddChunk(), CWindowManagerService::AddClientInTab(), CDockContainer::AddClientToCentralPane(), CSplitter::AddColumn(), CObjectList::AddColumn(), CMenuService::AddContributor(), CDataMiningService::AddContributor(), CNetScheduleServer::AddDefaultListener(), CBufferedSockReaderWriter::AddDirectWritten(), CTSE_ScopeInfo::AddEntry(), CBioseq_set_Info::AddEntry(), CGeneModel::AddExon(), CExtensionRegistry::AddExtension(), CUserTypeExtensionPoint::AddExtension(), CExtensionRegistry::AddExtensionPoint(), CFileLoadManager::AddFileFormat(), CGraphContainer::AddGraph(), CPopupMenuEvent::AddHandler(), impl::CBaseCmd::AddHint(), CTL_BCPInCmd::AddHint(), CBioseq_ScopeInfo::AddId(), CScopeInfo_Base::AddInfoLock(), CRasterizer< A >::AddInterval(), CDataContainerType::AddMembers(), CPackString::AddNew(), CTreeNode< TValue, TKeyGetter >::AddNode(), impl::CBaseCmd::AddOrderHint(), CTL_BCPInCmd::AddOrderHint(), CProjectFolderPrx::AddProjectItem(), CProjectService::AddProjectView(), CCDSInfo::AddPStop(), CPhrap_Read::AddReadLoc(), CEventLogService::AddRecord(), CRegionMap::AddRef(), CDataType::AddReference(), CPluginManager< TClass >::AddResolver(), CSplitter::AddRow(), CGBWorkspace::AddScopeToIndex(), CBlastQueryFilteredFrames::AddSeqLoc(), CWriteDB_SequenceFile::AddSequence(), CScope_Impl::AddSharedBioseq(), CScope_Impl::AddSharedSeq_annot(), CScope_Impl::AddSharedSeq_entry(), ASNLexer::AddStringChar(), CMenuItem::AddSubItem(), CSynonymsSet::AddSynonym(), CThreadPool_Impl::AddTask(), CNCMMDBPage::AddToLRU(), CWindowManager::AddToolBar(), CWindowManagerService::AddToolBarContext(), CWindowManagerService::AddToolBarFactory(), CUIToolRegistry::AddToolToMRU(), CBlobSplitterImpl::AddToSkeleton(), CViewManagerService::AddToWorkbench(), CTrackContainer::AddTrackProxy(), CTrackContainer::AddTracks(), CDataSource::AddTSE(), CReaderRequestResult::AddTSE_Lock(), CHit::AddUpSubHits(), CSeqDBAtlas::Alloc(), CObjectMemoryPoolChunk::Allocate(), CNCMMSizePool::AllocateBlock(), CAmbiguousRegion::Append(), CObjectList::Append(), CBDB_BLobFile::Append(), CHTML_tr_Cache::AppendCell(), CHTML_tr::AppendCell(), CUICommandRegistry::AppendMenuItem(), CUICommand::AppendMenuItem(), CHTML_table::AppendRow(), CTaxNRCriteria::Apply(), CUICommandRegistry::ApplyAccelerators(), CChainerArgUtil::ArgsToChainer(), CBDB_BufferManager::ArrangePtrsPacked(), CFastaReader::AssembleSeq(), CSeriesBase::AssertArrayIndex(), CObjectList::AssertValid(), CCharPtrFunctions< T >::Assign(), CContainerTypeInfo::Assign(), CSeqDB_BitSet::AssignBitRange(), CFastaReader::AssignMolType(), CCustomizedFastaReader::AssignMolType(), CDynamicCharArray::At(), CScope_Impl::AttachAnnot(), CVisibleRangeService::AttachClient(), CScope_Impl::AttachEntry(), CObservable::AttachObserver(), CBlobSplitterImpl::AttachToSkeleton(), CDataSource_ScopeInfo::AttachTSE(), BASE64_Encode(), CCleanup_imp::BasicCleanup(), BDB_batch_delete_recs(), BDB_Compare(), BDB_FixedByteStringCompare(), BDB_GetUFieldIdx(), BDB_iterate_file(), SAnnotObject_Key::begin(), CObjectOStreamXml::BeginClassMember(), CIStreamContainerIterator::BeginElement(), CCgiResponse::BeginPart(), CDataSource_ScopeInfo::BestResolve(), CSQLITE3_Statement::Bind(), CBDB_File::BindData(), CBDB_File::BindKey(), Blast_GetSeqLocInfoVector(), Blast_Message2TSearchMessages(), BlastHitList2SeqAlign_OMF(), CBDB_Cache::BlobCheckIn(), BlockTEA_Encode(), CSelectionService::Broadcast(), CVisibleRangeService::BroadcastVisibleRange(), BuildAln(), BuildCompressedTranslation(), BuildGFF3Gap(), CRegionMap::BumpClock(), C_xDriverMgr::C_xDriverMgr(), CScoringJob::Calculate(), CalculateFormattingParams(), CMatrixScoringMethod::CalculateScores(), CSNPScoringMethod::CalculateScores(), CSimpleScoringMethod::CalculateScores(), CQualityScoringMethod::CalculateScores(), CalculateSeqBufferLength(), CAlignMap::CAlignMap(), CEUtilsApp::CallEGQuery(), CEUtilsApp::CallEHistory(), CEUtilsApp::CallEInfo(), CEUtilsApp::CallEPost(), CEUtilsApp::CallESearch(), CEUtilsApp::CallESpell(), CAlnPos_CI::CAlnPos_CI(), CContigAssembly::CAlnStats::CAlnStats(), CAlnStats< _TAlnIdVec >::CAlnStats(), CAlnVecRow::CAlnVecRow(), impl::CBaseCmd::Cancel(), CAppJobTask::CancelBackgrounded(), CSchedulerEngine::CancelJob(), CThreadPool_Impl::CancelTask(), CThreadPool_Impl::CancelTasks(), CGwasTrackLoadManager::CanDo(), CWigLoadManager::CanDo(), CGffLoadManager::CanDo(), CGffExporter::CanDo(), CGenBankUILoadManager::CanDo(), CFlatFileExporter::CanDo(), CFASTAFormatLoadManager::CanDo(), CFastaExporter::CanDo(), CBedLoadManager::CanDo(), CAgpLoader::CanDo(), CAgpExporter::CanDo(), CPhyLoader::CanDo(), CPhyExporter::CanDo(), CNetBLASTUILoadManager::CanDo(), CBLASTToolManagerBase::CanDo(), CProjectLoadManager::CanDo(), CFileLoadManager::CanDo(), COpenViewManager::CanDo(), CAsnExporter::CanDo(), CAlgoToolManagerBase::CanDo(), CWriteDB_IndexFile::CanFit(), COpenViewManager::CanFitIn(), CAnnotObject_Info::CAnnotObject_Info(), CAnnotObject_Ref::CAnnotObject_Ref(), CSeqMap::CanResolveRange(), CAppExplorerDataObject::CAppExplorerDataObject(), CAppJobNotification::CAppJobNotification(), CArrayString< STR_SIZE >::CArrayString(), CAutoDefModifierCombo::CAutoDefModifierCombo(), CAutoDefSourceGroup::CAutoDefSourceGroup(), CBDB_Transaction::CBDB_Transaction(), CBioObjectId::CBioObjectId(), CBlastRPSAuxInfo::CBlastRPSAuxInfo(), CBlastRPSInfo::CBlastRPSInfo(), CBlockingQueue< TRequest >::CBlockingQueue(), CCache< TKey, TValue, THandler, TLock, TSize >::CCache(), CCachedSequence::CCachedSequence(), CCDSProteinPanel::CCDSProteinPanel(), CChain::CChain(), impl::CCmdBase::CCmdBase(), CCmdLineBlastXMLReportData::CCmdLineBlastXMLReportData(), CConfig::CConfig(), CConn_Streambuf::CConn_Streambuf(), impl::CConnection::CConnection(), CDataLoaderFactory::CDataLoaderFactory(), CDBL_Connection::CDBL_Connection(), CDenseSegHit::CDenseSegHit(), CGeneModel::CdsInvariant(), CEditScript::CEditScript(), CEffectiveSearchSpacesMemento::CEffectiveSearchSpacesMemento(), CEnumeratedTypeInfo::CEnumeratedTypeInfo(), CExpandItem::CExpandItem(), CExportDlgTask::CExportDlgTask(), CFastaMapper::CFastaMapper(), CGBReleaseFile::CGBReleaseFile(), CGBReleaseFileImpl::CGBReleaseFileImpl(), CGenePanel::CGenePanel(), CJobStatusTracker::ChangeStatus(), CDataType::Check(), CAmbigDataBuilder::Check(), CTL_RowResult::Check(), db_map_base< K, T >::iterator_base::check_open_cursor(), CheckDuplicates(), CResultSet::CheckIdx(), CSeqDB_BitSet::CheckOrFindBit(), CSeqDBOIDList::CheckOrFindOID(), CValidError_bioseq::CheckSoureDescriptor(), AbstractLexer::CheckSymbol(), CInitMutex_Base::CInitMutex_Base(), CIntersectionGiList::CIntersectionGiList(), CIStreamContainerIterator::CIStreamContainerIterator(), CLDS_FindSeqIdBase::CLDS_FindSeqIdBase(), CLocalHookSetBase::Clear(), CCDSInfo::Clear5PrimeCdsLimit(), CSeqDB_BitSet::ClearBit(), CRawSeqDBSource::ClearSequence(), CChain::ClipToCompleteAlignment(), CLockVectorGuard< TLockVect >::CLockVectorGuard(), CNamespace::Close(), CGlPane::Close(), CWindowManagerService::CloseAllClients(), CWindowManagerService::CloseClient(), CWindowManagerService::CloseClients(), impl::CBaseCmd::CloseCursor(), CTL_CursorCmd::CloseForever(), CGridThreadContext::CloseStreams(), CObjectOStreamXml::CloseTagStart(), CMasterContext::CMasterContext(), CMemberId::CMemberId(), CMessageSlotPopupWindow::CMessageSlotPopupWindow(), CNamedPipeProcessTask::CNamedPipeProcessTask(), CNcbiResourceInfo::CNcbiResourceInfo(), CNCDBFile::CNCDBFile(), CNCMMBlocksSet::CNCMMBlocksSet(), CNCStatTimer::CNCStatTimer(), CNetBlastSubmittingJob::CNetBlastSubmittingJob(), CNetCacheAPICF::CNetCacheAPICF(), CNetCacheServer::CNetCacheServer(), CNetScheduleAPICF::CNetScheduleAPICF(), pythonpp::CObject::CObject(), CModelCompare::CodingCompatible(), CModelCompare::CodingCompatibleOneCDS(), CModelCompare::CodingCompatibleTwoCDS(), COffsetReadHook::COffsetReadHook(), CGeneModel::CombineCdsInfo(), CSeq_loc_Conversion::CombineWith(), CAlignRange< Position >::CombineWithAbutting(), CDense_seg::Compact(), CBDB_RawFile::CompactEx(), CBDB_FieldLString::Compare(), CBDB_BufferManager::Compare(), CBDB_FieldString::Compare(), CBDB_FieldStringCase::Compare(), CSeqManip::Complement(), CSeqportUtil_implementation::Complement(), CompressNcbi2na(), SBDB_BvStore_Id< TBV >::ComputeBitCountMap(), CBlastPrelimSearch::ComputeBlastHSPResults(), CDistances::ComputeMatrix(), CBDB_BufferManager::Construct(), CSeqScores::ConstructSequenceAndMaps(), CDockSplitter::Cont_Add(), CDeleteQueue< Key, Value >::Contains(), impl::CConnection::Context(), CSeqConvert_imp::Convert(), CSeq_loc_Conversion_Set::Convert(), CSeq_loc_Conversion::Convert(), CSeq_loc_Conversion_Set::ConvertBond(), CSeq_loc_Conversion::ConvertBond(), CSeq_loc_Conversion_Set::ConvertCdregion(), CSeq_loc_Conversion::ConvertCdregion(), ConvertDendiagToPairwiseAln(), ConvertDensegToPairwiseAln(), CSeq_loc_Conversion_Set::ConvertEquiv(), CSeq_loc_Conversion::ConvertEquiv(), CSeq_loc_Conversion_Set::ConvertInterval(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion_Set::ConvertMix(), CSeq_loc_Conversion::ConvertMix(), impl::ConvertN2A(), CSeq_loc_Conversion_Set::ConvertPacked_int(), CSeq_loc_Conversion::ConvertPacked_int(), CSeq_loc_Conversion_Set::ConvertPacked_pnt(), CSeq_loc_Conversion::ConvertPacked_pnt(), CSeq_loc_Conversion_Set::ConvertPoint(), CSeq_loc_Conversion::ConvertPoint(), CSeq_loc_Conversion_Set::ConvertRna(), CSeq_loc_Conversion::ConvertRna(), ConvertSeqAlignToPairwiseAln(), ConvertSeqLocsToPairwiseAln(), CSeq_entry_EditHandle::ConvertSeqToSet(), ConvertSplicedToPairwiseAln(), ConvertStdsegToPairwiseAln(), COpenDlgTask::COpenDlgTask(), COpenViewEventRecord::COpenViewEventRecord(), COpenViewlDlgTask::COpenViewlDlgTask(), copy_2bit(), copy_2bit_reverse(), copy_2bit_table(), copy_2bit_table_reverse(), copy_4bit(), copy_4bit_reverse(), copy_4bit_table(), copy_4bit_table_reverse(), copy_8bit(), copy_8bit_reverse(), copy_8bit_table(), copy_8bit_table_reverse(), CBlobSplitterImpl::CopyDescr(), CPhrap_Seq::CopyFrom(), CBDB_Field::CopyFrom(), CopyGraphData(), CBlobSplitterImpl::CopyHist(), CMemberInfoFunctions::CopyHookedMember(), CVariantInfoFunctions::CopyHookedVariant(), CMemberInfoFunctions::CopyMissingHookedMember(), CMemberInfoFunctions::CopyMissingParentClass(), CMemberInfoFunctions::CopyMissingSimpleMember(), CVariantInfoFunctions::CopyNonObjectVariant(), CVariantInfoFunctions::CopyObjectPointerVariant(), CBDB_BufferManager::CopyPackedFrom(), CBlobSplitterImpl::CopySequence(), COStreamContainer::COStreamContainer(), CSeq_annot_SplitInfo::CountAnnotObjects(), CJobStatusTracker::CountStatus(), CPoolOfThreads< TRequest >::CPoolOfThreads(), CProjectServiceTestTask::CProjectServiceTestTask(), CProjectTask::CProjectTask(), CProSplignText::CProSplignText(), CPsiBlastInputClustalW::CPsiBlastInputClustalW(), CQueryFactoryInfo::CQueryFactoryInfo(), CQueue::CQueue(), CRasterizer< A >::CRasterizer(), python::CRealResultSet::CRealResultSet(), CWriteDB_File::Create(), python::CDMLConnPool::Create(), CBV_PoolBlockAlloc< BA, Lock >::CBlockFactory::Create(), CAnnotationASN1::CImplementationData::create_5prime_stop_feature(), CAnnotationASN1::CImplementationData::create_cdregion_feature(), CAnnotationASN1::CImplementationData::create_gene_feature(), CBlastDBAliasApp::CreateAliasFile(), CreateAlignRow(), CreateAnchoredAlnVec(), CBlastBioseqMaker::CreateBioseqFromId(), CWindowManager::CreateClient(), CMatrixScoringMethod::CreateColorTable(), CColumnScoringMethod::CreateColorTable(), CSimpleScoringMethod::CreateColorTable(), CQualityScoringMethod::CreateColorTable(), CWriteDB_Impl::CreateColumn(), CSparseMultiDataSource::CreateConsensus(), CPhrap_Contig::CreateContig(), CScoringMethodsDlg::CreateControls(), CQualityScoringPanel::CreateControls(), CSetupFactory::CreateHspPipe(), CSetupFactory::CreateHspStream(), CSetupFactory::CreateHspWriter(), CDataLoaderFactory::CreateInstance(), CBlobStorageFactory::CreateInstance(), CreateMenu(), CUICommandRegistry::CreateMenu(), CreateMenuItems(), CTaskTablePanel::CreateModel(), CUIToolRegistry::CreateMRUList(), CProjectService::CreateNewWorkspace(), CDeleteSeqFeatCommandFactory::CreateObject(), CChangeSeqFeatCommandFactory::CreateObject(), CSQLITE_HandleFactory::CreateObject(), CreatePanel(), CGBDocument::CreateProjectScope(), CPhrap_Read::CreateRead(), CServer::CreateRequest(), CAlnMultiModel::CreateRows(), CSetupFactory::CreateScoreBlock(), CNetBLAST_DMSearchTool::CreateSearchForm(), CSparseAln::CreateSegmentIterator(), CAlnVecGraphicDataSource::CreateSegmentIterator(), CAlnVecRowHandle::CreateSegmentIterator(), CreateSplicedsegFromAnchoredAln(), python::CCallableStmtHelper::CreateStmt(), CBlastOptionsFactory::CreateTask(), CNCDBFileObjFactory< TFile >::CreateTlsObject(), CViewManagerService::CreateViewInstanceByFingerprint(), CSnpTableView::CreateViewWindow(), CViewGraphic::CreateViewWindow(), CFeatTableView::CreateViewWindow(), CTextView::CreateViewWindow(), CSeqTextView::CreateViewWindow(), CPhyTreeView::CreateViewWindow(), CMultiAlignView::CreateViewWindow(), CMPCrossAlignView::CreateViewWindow(), CDotMatrixView::CreateViewWindow(), CCrossAlignView::CreateViewWindow(), CAnnotCompareView::CreateViewWindow(), CAlignSpanView::CreateViewWindow(), CreateWholeSeqLocFromIds(), CAlnMultiWidget::CreateWidget(), CReferenceItem::CReferenceItem(), CRemoteBlastDbDataLoader::CRemoteBlastDbDataLoader(), CResultSet::CResultSet(), CRgbaColor::CRgbaColor(), CRNAPanel::CRNAPanel(), CRunToolDlgTask::CRunToolDlgTask(), CSafeStaticLifeSpan::CSafeStaticLifeSpan(), CScope::CScope(), CScopeInfo_Base::CScopeInfo_Base(), CScoringJob::CScoringJob(), CSeq_align_Handle::CSeq_align_Handle(), CSeq_annot_SplitInfo::CSeq_annot_SplitInfo(), CSeq_descr_CI::CSeq_descr_CI(), CSeq_feat_Handle::CSeq_feat_Handle(), CSeq_graph_Handle::CSeq_graph_Handle(), CSeq_hist_SplitInfo::CSeq_hist_SplitInfo(), CSeq_id_Handle::CSeq_id_Handle(), CSeq_id_Info::CSeq_id_Info(), CSeq_id_Which_Tree::CSeq_id_Which_Tree(), CSeqDB_BitSet::CSeqDB_BitSet(), CSeqDB_ColumnReader::CSeqDB_ColumnReader(), CSeqDBImpl::CSeqDBImpl(), CSeqDBIntCache< TDeflineCacheItem >::CSeqDBIntCache(), CSeqDBMapStrategy::CSeqDBMapStrategy(), CSeqDBOIDList::CSeqDBOIDList(), CSeqDBTaxId::CSeqDBTaxId(), CSeqdesc_CI::CSeqdesc_CI(), CSimpleClassFactoryImpl< CReader, CCacheReader >::CSimpleClassFactoryImpl(), CSnpBitfield1_2::CSnpBitfield1_2(), CSnpBitfield2::CSnpBitfield2(), CSQLITE_StatementLock::CSQLITE_StatementLock(), CStdSegHit::CStdSegHit(), CTaskCmdLineArgs::CTaskCmdLineArgs(), CThreadPool_Guard::CThreadPool_Guard(), CThreadPool_ServiceThread::CThreadPool_ServiceThread(), CThreadPool_Thread::CThreadPool_Thread(), CTransmissionWriter::CTransmissionWriter(), CTSE_ScopeInfo::CTSE_ScopeInfo(), CUICommand::CUICommand(), CVersionInfo::CVersionInfo(), CWindowManagerEvent::CWindowManagerEvent(), CWorkbench::CWorkbench(), CWriteDB_ColumnBuilder::CWriteDB_ColumnBuilder(), CWriterByteSourceReader::CWriterByteSourceReader(), CWriterCopyByteSourceReader::CWriterCopyByteSourceReader(), CRgbaColor::Darken(), CRegionMap::Data(), CTempString::data(), pythonpp::CUserError< COperationalError, CDatabaseError >::Declare(), pythonpp::CModuleExt::Declare(), pythonpp::CExtObject< CStringType >::Declare(), CMemStore::Delete(), impl::CBaseCmd::Delete(), CNCMMDBCache::DeleteAllPages(), CNCBlobLockHolder::DeleteBlob(), CObjectList::DeleteColumn(), CNCFileSystem::DeleteFileOnClose(), CRWLockHolder_Pool::DeleteHolder(), CObject::DeleteThis(), CNCMMSizePool_Getter::DeleteTlsObject(), CWindowManagerService::DeleteToolBarFactory(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::Deserialize(), CObservable::DetachObserver(), CNCMMDBCache::DetachPage(), CDataSource_ScopeInfo::DetachScope(), CDataLoader::DetailsToChoice(), CNcbiMatrix< T >::Diagonal(), SNetServiceImpl::DiscoverServers(), CEventHandler::Dispatch(), CRemoveTSE_EditCommand::Do(), CSeq_entry_Remove_EditCommand::Do(), CBlastDBSeqId::do_copy(), CHTML_table::DoAppendChild(), CHTML_tr::DoAppendChild(), CIntervalTree::DoDelete(), CIntervalTree::DoInsert(), CLockVectorGuard< TLockVect >::DoLock(), CNCMMDBPage::DoPeekedDestruction(), CWorkspaceFormatLoadManager::DoTransition(), CProjectFormatLoadManager::DoTransition(), COpenViewManager::DoTransition(), CASNFormatLoadManager::DoTransition(), CDelayBuffer::DoUpdate(), CSelectionHelper::Draw(), CAppExplorerService::Drop(), CBDB_Cache::DropBlob(), DropExonHead(), CSeq_id_Which_Tree::DropInfo(), CTSE_ScopeInfo::DropTSE_Lock(), CNCMMReserve::DumpChain(), CNCMMReserve::DumpChunks(), CAnnotCompareDS::DumpTextReport(), CBDB_File::DuplicateStructure(), CBDB_BufferManager::DuplicateStructureFrom(), ElementsSum(), CCacheDemoApp::EmptyOnOverflowDemo(), CAppExplorerService::EnableDisableProjectItems(), CObjectOStream::CharBlock::End(), CObjectOStream::ByteBlock::End(), CObjectIStream::CharBlock::End(), CObjectIStream::ByteBlock::End(), SAnnotObject_Key::end(), CBuildDatabase::EndBuild(), CObjectIStreamXml::EndDelayBuffer(), TestUtil::EndianIndependentBufferHash(), CCgiResponse::EndLastPart(), CCgiResponse::EndPart(), CReaderRequestResult::EndRecursion(), CGBSeqFormatter::EndSection(), CIStreamBuffer::EndSubSource(), CDockLayoutTree::CNode::EnforceChildOrder(), CNcbiTestsTreeBuilder::EnsureDep(), CGridWorkerNode::EnterExclusiveMode(), CGridWorkerNode::EnterExclusiveModeOrReturnJob(), IRegistry::EnumerateEntries(), IRegistry::EnumerateSections(), CObjectOStreamXml::EolIfEmptyTag(), CTreeIterator::Erase(), CRangeMapBase< CRangeMapTraits< Position, Mapped > >::erase(), CDeleteQueue< Key, Value >::Erase(), CExplorerItem::EraseChildItem(), CScannerFunctorOR::Eval(), CScannerFunctorAND::Eval(), CCurveBezier::EvalPos(), CCurveBezier::EvalTan(), CQueryFunction_BV_In_Or< BV >::Evaluate(), CQueryFunction_BV_Logic< BV >::Evaluate(), python::CCallableStmtHelper::Execute(), python::CStmtHelper::Execute(), CGroupMapWidget::ExpandGroup(), ExpandSupport(), CObjectIStreamAsnBinary::ExpectIndefiniteLength(), CGeneModel::Extend(), CModelExon::Extend(), CGeneModel::ExtendLeft(), CGeneModel::ExtendRight(), CTar::Extract(), CScientificNameExtractor::Extract(), CCommonTaxonomicNameExtractor::Extract(), CAccessionExtractor::Extract(), ExtractBlast4Request(), CTimeLine< BV >::ExtractObjects(), CWinMaskCountsGenerator::fastalen(), pythonpp::CErrorStackElem::Fetch(), CBDB_FileCursor::Fetch(), CBDB_LobFile::Fetch(), CBDB_MergeBlobWalkerAsync< BF >::Fetch(), CBDB_MergeBlobWalker< BF >::Fetch(), db_map_base< K, T >::iterator_base::fetch_next(), db_map_base< K, T >::iterator_base::fetch_prev(), CBDB_FileCursor::FetchFirst(), CBlobMetaDB::FetchMeta(), CNCDBFile::FillBlobIds(), CChainMembers::FillGapsInAlignments(), CRgbaGradColorTable::FillGradient(), AbstractLexer::FillNextToken(), CNCBlob::Finalize(), CCgiCookies::Find(), CSeqDB_Path::FindBaseName(), CSeqDB_BasePath::FindBaseName(), CSeqDB_Path::FindBasePath(), CCyclicDepends::FindCyclesNew(), CSeqDB_Path::FindDirName(), CSeqDB_BasePath::FindDirName(), CSeqDB_Path::FindFileName(), FindGeneticCode(), CSeq_id_PDB_Tree::FindInfo(), CSeq_id_Patent_Tree::FindInfo(), CSeq_id_Giim_Tree::FindInfo(), CSeq_id_General_Tree::FindInfo(), CSeq_id_Local_Tree::FindInfo(), CSeq_id_Textseq_Tree::FindInfo(), CSeq_id_Gi_Tree::FindInfo(), CSeq_id_int_Tree::FindInfo(), CAlignRangeCollExtender< TColl >::FindOnSecond(), CSeq_id_PDB_Tree::FindOrCreate(), CSeq_id_Patent_Tree::FindOrCreate(), CSeq_id_Giim_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_Textseq_Tree::FindOrCreate(), CSeq_id_Gi_Tree::FindOrCreate(), CSeq_id_int_Tree::FindOrCreate(), CWorkspacePrx::FindProjectFolderById(), CWorkspaceConstPrx::FindProjectFolderById_C(), CLDS_Query::FindSequences(), CNetService::FindServerAndExec(), FindStartsStops(), CBDB_CacheIWriter::Flush(), CBDB_ExtBlobStore< TBV >::Flush(), CSelectionControl::FocusItem(), CBDB_Env::ForceRemove(), CReadObjectList::ForgetObjects(), CWriteObjectList::ForgetObjects(), CTSE_ScopeInfo::ForgetTSE_Lock(), CGBSeqFormatter::FormatDefline(), CGBSeqFormatter::FormatLocus(), CGBSeqFormatter::FormatReference(), CTextUtils::FormatSeparatedNumber(), CGBSeqFormatter::FormatSource(), CSparseKmerCounts::FractionCommonKmersDist(), CSparseKmerCounts::FractionCommonKmersGlobalDist(), FrameNumber2NetworkFrame(), CSeqDBAtlas::Free(), CBDB_ResultStore< TBV >::CResultStoreEnumerator::FreeCurrentSubset(), CRegistryFile::FromConfigFile(), CGeneModel::FShiftedLen(), CAlignMap::FShiftedMove(), GBenchBrowserConfig(), CFlatFileGenerator::Generate(), CWriteDB_PackedSemiTree::Iterator::Get(), CSeqDBAtlasHolder::Get(), CBDB_FieldLString::Get(), CTreeIteratorTmpl< CTreeLevelIterator >::Get(), CLoadInfoMap< Key, Info >::Get(), CDeleteQueue< Key, Value >::Get(), CAnnotTypes_CI::Get(), CPluginManagerGetter< Interface >::Get(), CBDB_FieldFixedByteString::Get(), CBDB_FieldDouble::Get(), CBDB_FieldFloat::Get(), CBDB_FieldUint4::Get(), CBDB_FieldChar::Get(), CBDB_FieldUChar::Get(), CBDB_FieldUint2::Get(), CBDB_FieldInt2::Get(), CBDB_FieldInt4::Get(), CBDB_FieldUint8::Get(), CBDB_FieldInt8::Get(), Get_I_DriverContext(), CSparseKmerCounts::GetAALetter(), CContextTranslator::GetAbsoluteContext(), CBioseq_Handle::GetAccessSeq_id_Handle(), CBDB_Cache::GetAccessTime(), CLoadInfoSeq_ids::GetAccVer(), CWindowManagerService::GetActiveClient(), CSeqDBAliasNode::GetAliasFileValues(), CSparseAln::GetAlignCollection(), CSparseAlignment::GetAlignCollection(), CCmdLineBlastXMLReportData::GetAlignment(), IScoringMethod::GetAlignmentTagByType(), CDockContainer::GetAllClients(), CWindowManagerService::GetAllClients(), CNCDBFile::GetAllDBParts(), SSNP_Info::GetAlleleStrIndex(), CAlnPos_CI::GetAlnPos(), CSparseAln::GetAlnPosFromSeqPos(), SChunkTranslator::GetAlnPosFromSeqPos(), CAlnChunkSegment::GetAlnRange(), CSparseAln::GetAlnSeqString(), CSparseAlignment::GetAlnSeqString(), CAnchoredAln::GetAnchorRow(), CAnnotObject_Ref::GetAnnotObject_Info(), CScannerFunctorArgN::GetArg(), CScannerFunctorArgN::GetArgField(), pythonpp::CExtObject< CStringType >::GetAttrImpl(), CFileCode::GetBaseFileBaseName(), CTSE_Info_Object::GetBaseParent_Info(), GetBestCdsForMrna(), GetBestGeneForCds(), GetBestGeneForMrna(), GetBestMrnaForCds(), CBlast4Field::GetBig_integer(), CTL_BCPInCmd::GetBind(), CPlaceId::GetBioseq_setId(), CSparseAln::GetBioseqHandle(), CHitMatrixDataSource::GetBioseqHandle(), CPlaceId::GetBioseqId(), CTSE_ScopeInfo::GetBioseqInfo(), CTSE_ScopeInfo::GetBioseqLock(), CRemoteBlastDbAdapter::GetBioseqNoData(), CTSE_ScopeInfo::GetBioseqsIds(), CSeqDB_BitSet::GetBit(), SAffinityInfo::GetBlacklistedJobs(), CBlastQueryVector::GetBlastSearchQuery(), CTL_Connection::GetBLKVersion(), CSeqDBColumn::GetBlob(), CSQLITE_Statement::GetBlob(), CNCBlobLockHolder::GetBlob(), CDBAPI_Cache::GetBlobAccess(), CBDB_Cache::GetBlobAccess(), CGBDataLoader::GetBlobById(), CTSE_Split_Info::GetBlobId(), CTSE_Chunk_Info::GetBlobId(), CTSE_ScopeInfo::GetBlobId(), CNCDBFile::GetBlobIdsList(), CBDB_ExtBlobMap::GetBlobLoc(), CTSE_ScopeInfo::GetBlobOrder(), CResultSet::GetBlobOStream(), CSQLITE3_Cache::GetBlobOwner(), CDBAPI_Cache::GetBlobOwner(), CBDB_Cache::GetBlobOwner(), CGBDataLoader::GetBlobs(), CDataSource::GetBlobs(), CTSE_Chunk_Info::GetBlobVersion(), CNCMMBlocksSet::GetBlock(), CBlast4Field::GetBoolean(), CDockLayoutTree::CNode::GetBranchIndex(), CBDB_RawFile::GetBtreeMinKeysPerPage(), CCgiApplicationCached::GetCacheStorage(), CODBC_CursorResult::GetCDBResult(), impl::CConnection::GetCDriverContext(), GetCdssForGene(), CSplitter::GetCell(), CNCMMChainsPool::GetChain(), CSQLITE_Statement::GetChangedRowsCount(), CCalcCharsOStream::GetCharCount(), CChecksum::GetChecksum(), CBlastDbDataLoader::GetChunk(), CAnnotObject_Info::GetChunk_Info(), CNCDBFile::GetChunkIds(), CNCMMReserve::GetChunks(), CHandleRange::GetCircularRangeEnd(), CHandleRange::GetCircularRangeStart(), CDefaultWorkerNodeInitContext::GetCleanupEventSource(), CBlastAppArgs::GetClientId(), CDockContainer::GetClientsInWindow(), CNCBitMask< num_bits >::GetClosestSet(), CDBL_CursorResult::GetCmd(), CDBL_Result::GetCmd(), CDBL_Cmd::GetCmd(), CTL_CursorResultExpl::GetCmd(), GetCollectionSearchDirection(), CAnnotTypes_CI::GetCollector(), CResultSet::GetColNum(), CSeqTextConfig::GetColor(), CWidgetDisplayStyle::GetColor(), CRgbaGradColorTable::GetColor(), CTraceGraph::GetColorByValue(), CColumnScoringMethod::GetColorForNoScore(), CSimpleScoringMethod::GetColorForNoScore(), CQualityScoringMethod::GetColorForNoScore(), CMatrixScoringMethod::GetColorForScore(), CColumnScoringMethod::GetColorForScore(), CColorTableMethod::GetColorForScore(), CTestSeqBasedMethod::GetColorForScore(), CSimpleScoringMethod::GetColorForScore(), CQualityScoringMethod::GetColorForScore(), CAlnMultiRenderer::GetColumn(), CSeqDBVol::GetColumnBlob(), CSeqDBImpl::GetColumnBlob(), CObjectListTableModel::GetColumnFormat(), CSeqDBVol::GetColumnMetaData(), CSeqDBImpl::GetColumnMetaData(), CTextTableModel::GetColumnName(), CFeatTableDS::GetColumnName(), CSQLITE_Statement::GetColumnName(), CResultSet::GetColumnNo(), CSQLITE_Statement::GetColumnsCount(), CObjectList::GetColumnType(), CFeatTableDS::GetColumnType(), CAlnMultiRenderer::GetColumnTypeByIndex(), CTextView::GetCommandHandler(), CSeqTextView::GetCommandHandler(), CEventView::GetCommandHandler(), CProjectViewBase::GetCommandHandler(), CBioseq_set_Handle::GetComplexityLevel(), CBioseq_Handle::GetComplexityLevel(), CMySQL_LangCmd::GetConnection(), CDBL_Result::GetConnection(), CDBL_Cmd::GetConnection(), CTL_CmdBase::GetConnection(), CTL_RowResult::GetConnection(), impl::CCmdBase::GetConnImpl(), CMemberInfoFunctions::GetConstDelayedMember(), CVariantInfoFunctions::GetConstDelayedVariant(), CVariantInfoFunctions::GetConstInlineVariant(), CVariantInfoFunctions::GetConstPointerVariant(), CMemberInfoFunctions::GetConstSimpleMember(), CVariantInfoFunctions::GetConstSubclassVariant(), AnnotObjTrait< CSeq_graph >::GetCont(), AnnotObjTrait< CSeq_align >::GetCont(), AnnotObjTrait< CSeq_feat >::GetCont(), CObjectIStreamXml::GetContainerElementTypeFamily(), CObjectOStreamXml::GetContainerElementTypeInfo(), CObjectIStreamXml::GetContainerElementTypeInfo(), CContextTranslator::GetContextInChunk(), CPhrap_Sequence::GetContig(), CIdDeMux< TBV, TBVFact >::GetCoordinates(), IObjDeMux< unsigned >::GetCoordinates(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::GetCoordinates(), CBDB_BlobDeMux_RoundRobin::GetCoordinates(), CBDB_BlobDeMux::GetCoordinates(), ctlib::Command::GetCTLConn(), ctlib::Connection::GetCTLContext(), CTL_Connection::GetCTLibContext(), CBlastOptionsLocal::GetCullingLimit(), CProjectLoadManager::GetCurrentPanel(), CBLASTParams::GetCurrParams(), CBlast4Field::GetCutoff(), CImage::GetData(), CAlnSpanVertModel::GetData(), CAlnTableDS::GetData(), CBDB_LobFile::GetData(), CNetCacheAPI::GetData(), CBDB_FieldString::GetDataLength(), CTSE_Info::GetDataSource(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::GetDb(), CDBL_Connection::GetDBLibCtx(), CODBC_CursorResult::GetDefineParams(), CDBL_CursorResult::GetDefineParams(), CMemberInfoFunctions::GetDelayedMember(), CVariantInfoFunctions::GetDelayedVariant(), GetDiagErrCodeInfo(), GetDiagHandler(), CAnchoredAln::GetDim(), CAlnStats< _TAlnIdVec >::GetDimForAln(), CIdDeMux< TBV, TBVFact >::GetDimVector(), CStatement::CStmtParamsMetaData::GetDirection(), CObjectList::GetDouble(), CSQLITE_Statement::GetDouble(), C_xDriverMgr::GetDriverContext(), CDbapiSampleApp::GetDriverName(), CTSE_ScopeInfo::GetDSInfo(), CSeq_loc_Conversion::GetDstPoint(), CScope_Impl::GetEditDataSource(), CScope_Impl::GetEditHandle(), CCmdLineBlastXMLReportData::GetEffectiveSearchSpace(), CEffectiveSearchSpaceCalculator::GetEffSearchSpace(), CEffectiveSearchSpaceCalculator::GetEffSearchSpaceForContext(), CEHistory_Request::GetEHistoryResult(), CEInfo_Request::GetEInfoResult(), CStdSegHit::GetElem(), CDiagHit::GetElem(), CDenseSegHit::GetElem(), CTypedArrayAdapter< Type, TBase >::GetElem(), CELink_Request::GetELinkResult(), CBioseqContext::GetEncode(), CEPost_Request::GetEPostResult(), CFeatureTypesParser::GetErrorToken(), CESearch_Request::GetESearchResult(), CESpell_Request::GetESpellResult(), CESummary_Request::GetESummaryResult(), GetExtensionAsInterface(), CObjectListTableModel::GetExtraColumnName(), CSeqSearchTableModel::GetExtraColumnName(), CDocsumTableModel::GetExtraColumnName(), CNetBlastJobTableModel::GetExtraColumnName(), CObjectListTableModel::GetExtraValueAt(), CDocsumTableModel::GetExtraValueAt(), CNetBlastJobTableModel::GetExtraValueAt(), CCreateFeat::GetFeat(), CFeatTableDS::GetFeature(), CBioTree< TBioNode >::CBioNode::GetFeature(), CBDB_File::GetField(), CNCBlobStorage::GetFile(), CWorkbench::GetFileArtProvider(), CBlastOptionsLocal::GetFilterString(), CLoadInfoSeq_ids::GetGi(), CId1Reader::GetGiBlob_ids(), CSeq_id_Mapper::GetGiHandle(), CId1Reader::GetGiSeq_ids(), CGraphContainer::GetGraph(), CHitList::GetHit(), CExplorerItem::GetIconIndex(), CSeqTableLocColumns::GetId(), GetId(), CBioseqSeqInfoSrc::GetId(), CSeqTableLocColumns::GetIdHandle(), CIdDeMux< TBV, TBVFact >::GetIdVector(), CTextTableModel::GetImageAliasAt(), CClassTypeInfo::GetImplicitMember(), CIndexedOctetStrings::GetIndex(), CSeq_annot_SNP_Info::GetIndex(), CSeq_annot_SNP_Info::GetInfo(), CSeq_annot_Info::GetInfo(), CVariantInfoFunctions::GetInlineVariant(), CSQLITE_Statement::GetInt(), CSQLITE_Statement::GetInt8(), CBlast4Field::GetInteger(), CObjectList::GetInteger(), CBlast4Field::GetIntegerList(), CPrimitiveTypeInfo::GetIntegerTypeInfo(), CDB_Result::GetIResult(), CBlobStreamHelper::GetIStream(), CWorkerNodeJobContext::GetIStream(), CGridThreadContext::GetIStream(), CDBL_BlobResult::GetItem(), CDBL_Result::GetItemInternal(), CTL_RowResult::GetItemInternal(), CAppExplorerData::GetItems(), CAppExplorerService::GetItemType(), CAnnotTypes_CI::GetIterator(), CGridThreadContext::GetJob(), CSchedulerEngine::GetJobState(), CRADispatcherClient::GetJobState(), CHitList::GetKeepHit(), SAnnotObjectsIndex::GetKey(), CAnnotObject_Info::GetKey(), CHitMatrixDataSource::GetLabel(), CSeq_annotHandler::GetLabel(), CUserFeatHandler::GetLabel(), CLoadInfoSeq_ids::GetLabel(), CQueryDataPerChunk::GetLastChunk(), CSQLITE_Statement::GetLastInsertedRowid(), CBDB_FileCursor::GetLastMultiFetchData(), CBDB_FileCursor::GetLastMultiFetchDataLen(), CPriorityNode::GetLeaf(), CFIntron::Getlen(), CSeq_entry_Info::GetLoadedAnnot(), CBlastDbDataLoader::GetLoaderNameFromArgs(), CReaderRequestResult::GetLoadLock(), CSeqTableLocColumns::GetLoc(), CBDB_BlobMetaContainer::GetLoc(), python::CDMLConnPool::GetLocalStmt(), CAnnotObject_Info::GetLocsTypes(), CGridDebugContext::GetLogFileName(), CBDB_FieldLString::GetLString(), CMPCrossAlignView::GetMainObject(), CProjectView::GetMainObject(), CNCMMSizePool_Getter::GetMainPool(), CSeqDB_ColumnEntry::GetMap(), CMappedGraph::GetMappedGraphRanges(), CMappedGraph::GetMappedGraphTotalRange(), CAnnotMapping_Info::GetMappedSeq_align(), CAnnotMapping_Info::GetMappedSeq_feat(), CAnnotMapping_Info::GetMappedSeq_id(), CAnnotMapping_Info::GetMappedSeq_loc(), CAnnotObject_Info::GetMaps(), CSeqDBGiMask::GetMaskData(), CBlastQueryVector::GetMaskedRegions(), CCmdLineBlastXMLReportData::GetMaskLocations(), CDataSource::GetMatches(), CBlast4Field::GetMatrix(), CTraceData::GetMax(), CStatement::CStmtParamsMetaData::GetMaxSize(), CChecksum::GetMD5Digest(), CWindowManager::GetMenu(), CWindowManagerService::GetMenu(), CMergeBitsetBlob< BV >::GetMergeBuffer(), CDataType::GetModule(), CModuleContainer::GetModuleContainer(), GetMrnasForGene(), CUIToolRegistry::GetMRUToolNames(), impl::CConnection::GetMsgHandlers(), CStatement::CStmtParamsMetaData::GetName(), CAnnotName::GetName(), CDBServiceMapperTraits< T >::GetName(), CGBDataLoader::GetNamedAnnotAccessions(), CFileCode::GetNamespace(), GetNetBlastJobDescription(), CFastaBioseqSource::GetNext(), CTar::GetNextEntryInfo(), CIntervalTree::GetNextRootKey(), CPsiBlastInputData::GetNumAlignedSequences(), CObjMgrFree_LocalQueryData::GetNumQueries(), CObjMgr_LocalQueryData::GetNumQueries(), CAutoDefModifierCombo::GetOrgMod(), CFeatTableDS::GetOriginalFeature(), CAlign_CI::GetOriginalSeq_align(), CBlobStreamHelper::GetOStream(), CWorkerNodeJobContext::GetOStream(), CGridThreadContext::GetOStream(), COpenViewManager::GetOutputIndices(), CStdCmdLineArgs::GetOutputStream(), CHandleRange::GetOverlappingRange(), CPhrap_Seq::GetPaddedPos(), CNCMMDBPagesHash::GetPage(), CHMMParameters::SDetails::GetParameter(), CGBDataLoader::GetParamsSubnode(), CProjectItemPrx::GetParentFolder(), CProjectFolderPrx::GetParentFolder(), CProjectItemConstPrx::GetParentFolder_C(), CDbapiSampleApp::GetPassword(), CDbapiDriverSampleApp::GetPassword(), CSeqDB_Path::GetPathS(), CCurveCubic::GetPoint(), CCurveBezier::GetPoint(), CVariantInfoFunctions::GetPointerVariant(), CServer_ConnectionPool::GetPollAndTimerVec(), CSequence::GetPrintableLetter(), CGBProjectHandle::GetProject(), CProjectLoadOptionPanel::GetProjectFilenames(), CAppExplorerService::GetProjectIdByChild(), pythonpp::CUserError< COperationalError, CDatabaseError >::GetPyException(), SSNP_Info::GetQualityCodesOsIndex(), SSNP_Info::GetQualityCodesStrIndex(), CCmdLineBlastXMLReportData::GetQuery(), CQueryDataPerChunk::GetQueryLength(), CBlast4Field::GetQueryMask(), CBlastQueryVector::GetQuerySeqLoc(), CSeq_data_SplitInfo::GetRange(), CSeqTableLocColumns::GetRange(), CAlnChunkSegment::GetRange(), CHit::GetRangeFromSeq1(), CHit::GetRangeFromSeq2(), CHitMatrixPane::GetRangeSelection(), CSeqDBVol::GetRawSeqAndAmbig(), CPhrap_Sequence::GetRead(), CTransmissionReader::GetReader(), CBDB_Cache::GetReadStream(), CBlast4Field::GetReal(), CBDB_RawFile::GetRecLen(), CEventLogService::GetRecord(), CLDS_DataLoader::GetRecords(), CHitMatrixRenderer::GetRect(), CUndoManager::GetRedoLabel(), CSeqDBRawFile::GetRegion(), CSeqDBAtlas::GetRegion(), CAccessionItem::GetRegion(), CRegistryFile::GetRegistry(), CWorkbench::GetRegistrySectionPath(), CBlastOptions::GetRemoteProgramAndService_Blast3(), CDiagContextThreadData::GetRequestContext(), CAlnMap::GetResidueIndexMap(), CEGQuery_Request::GetResult(), CTL_Cmd::GetResult(), CResultSet::GetResultType(), CNetBlastJobDescriptor::GetRID(), SAlignment_Segment::GetRow(), CAnnotCompareDS::GetRow(), CLayout::GetRow(), CAlnMultiModel::GetRow(), CScope_Impl::GetScope(), CAnnotTypes_CI::GetScope(), CCmdLineBlastXMLReportData::GetScope(), CBlastQueryVector::GetScope(), CTSE_ScopeInfo::GetScopeLock(), CEditScript::GetScore(), CHitMatrixDataSource::GetScoreRange(), CScoreCache::GetScores(), CStdSegHit::GetScoreValue(), CDiagHit::GetScoreValue(), CDenseSegHit::GetScoreValue(), CSGAlignmentDS::GetScoringMethods(), CAlnMultiWidget::GetSelectedIds(), CSelectionControl::GetSelectedIndex(), CGroupMapWidget::GetSelectedItem(), CAlnSpanWidget::GetSelection(), CAlnTableWidget::GetSelection(), CSeqTextView::GetSelection(), CCrossAlignView::GetSelection(), CAlignSpanView::GetSelection(), CProjectTreeView::GetSelection(), CAnnotObject_Info::GetSeq_annot_Info(), CAnnotObject_Ref::GetSeq_annot_SNP_Info(), CSparseAln::GetSeqAlnRange(), CSparseAln::GetSeqAlnStart(), CSparseAln::GetSeqAlnStop(), CSeqDBVol::GetSeqData(), CSeqVector_CI::GetSeqData(), CCachedSeqDataForRemote::GetSeqDataChunk(), GetSeqDB(), CSparseAln::GetSeqId(), CBioObjectId::GetSeqId(), CRemoteBlastDbAdapter::GetSeqIDs(), CAlnStats< _TAlnIdVec >::GetSeqIdsForAln(), CRemoteBlastDbAdapter::GetSeqLength(), CSeqDBVol::GetSeqLengthApprox(), CSeqDBVol::GetSeqLengthExact(), CSeqDBVol::GetSeqLengthProt(), CBioseq_Info::GetSeqMap(), CAlnPos_CI::GetSeqPos(), CSparseAln::GetSeqPosFromAlnPos(), SChunkTranslator::GetSeqPosFromAlnPos(), CSparseAln::GetSeqRange(), CSparseAln::GetSeqStart(), CSparseAln::GetSeqStop(), CSparseAln::GetSeqString(), CRemoteBlastDbAdapter::GetSequence(), CLocalBlastDbAdapter::GetSequence(), GetSequence_OMF(), GetSequenceLengthAndId(), GetSequenceProtein(), GetSequenceSingleNucleotideStrand(), CDbapiSampleApp::GetServerName(), CDbapiDriverSampleApp::GetServerName(), CCgiRequest::GetSession(), CBioObjectId::GetSetId(), CDataSource::GetSharedTSE(), CWorkerNodeJobContext::GetShutdownLevel(), CMemberInfoFunctions::GetSimpleMember(), SNetServiceImpl::GetSingleServer(), CAnnotObject_Ref::GetSNP_Info(), CAutoDefSourceGroup::GetSourceDescription(), CDataValue::GetSourceFileName(), CTSE_Chunk_Info::GetSplitInfo(), CTSE_Split_Info::GetSplitVersion(), CObjectStack::GetStackPath(), CObjectStack::GetStackTraceASN(), CBDB_Cache::GetStatistics(), CBlastSearchTask::GetStatusText(), CSystemPath::GetStdPath(), CSeqTableLocColumns::GetStrand(), CBlast4Field::GetStrandType(), CBlast4Field::GetString(), CObjectList::GetString(), CSQLITE_Statement::GetString(), CLightString::GetString(), CCommentItem::GetStringForMolinfo(), CVariantInfoFunctions::GetSubclassVariant(), CBlastDatabaseArgs::GetSubjects(), CAutoDefModifierCombo::GetSubSource(), CScope_Impl::GetSynonyms(), CProjectLoadManager::GetTask(), CFileLoadManager::GetTask(), CSeqDBColumn::GetTitle(), CHitMatrixRenderer::GetTooltip(), CGraphContainer::GetTooltip(), CStatement::CStmtParamsMetaData::GetTotalColumns(), CResultSet::GetTotalColumns(), CGen_code_table_imp::GetTransTable(), CPriorityNode::GetTree(), CTSE_Info_Object::GetTSE_Info(), CDataSource::GetTSE_LoadLock(), CDataSource::GetTSE_LoadLockIfLoaded(), CDataSource_ScopeInfo::GetTSE_Lock(), CScope_Impl::GetTSESetWithAnnots(), CDataSource::GetTSESetWithBioseqAnnots(), CAlnChunkSegment::GetType(), CStatement::CStmtParamsMetaData::GetType(), pythonpp::CExtObject< CStringType >::GetType(), CBDB_FC_Condition::GetUnassignedField(), CUndoManager::GetUndoLabel(), CBioObjectId::GetUniqNumber(), CDbapiSampleApp::GetUserName(), CDbapiDriverSampleApp::GetUserName(), CFeatConfigValues< V >::GetValue(), CTextTableModel::GetValueAt(), CObjectListTableModel::GetValueAt(), CFeatTableDS::GetValueAt(), CAlnSpanVertModel::GetValueAt(), CAlnTableDS::GetValueAt(), CTaskViewModel::GetValueAt(), CEventViewModel::GetValueAt(), CTraceData::GetValues(), CDataTypeModule::GetVar(), CObjectList::_CColumn::GetVectorDouble(), CObjectList::_CColumn::GetVectorInt(), CObjectList::_CColumn::GetVectorString(), CSeq_id_Textseq_Info::TKey::GetVersion(), CSeqDB_ColumnEntry::GetVolumeIndex(), CFIntron::GetW1len(), CFIntron::GetW2len(), CAlnMap::GetWidth(), CSnpTableView::GetWindow(), CViewGraphic::GetWindow(), CFeatTableView::GetWindow(), CSeqTextView::GetWindow(), CPhyTreeView::GetWindow(), CMultiAlignView::GetWindow(), CMPCrossAlignView::GetWindow(), CDotMatrixView::GetWindow(), CCrossAlignView::GetWindow(), CAnnotCompareView::GetWindow(), CAlignSpanView::GetWindow(), CMemberInfoFunctions::GetWithSetFlagMember(), CProjectLoadOptionPanel::GetWorkspaceFilename(), CTransmissionWriter::GetWriter(), CBDB_Cache::GetWriteStream(), CGlWidgetPane::GHH_CaptureMouse(), CGeneModel::GoodEnoughToBeAnnotation(), SCigarAlignment::GuessFormat(), CTTWindow::handle(), CDBAPI_Cache::HasBlobs(), CSeqDBIsam::HashToOids(), CSeqDBFiltInfo::HaveOidList(), CCacheDemoApp::HeapCacheDemo(), HexToString(), CSeqDBLockHold::HoldRegion(), CNcbiMatrix< T >::Identity(), CSeqDBIsam::IdsToOids(), CSeqDBIsam::IdToOid(), CBDB_FC_Condition::IncFieldsAssigned(), CSeqDBMemLease::IncrementRefCnt(), CTextTableModel::Init(), CScoreMethodsDlg::Init(), CDiagHitElement::Init(), SChunkTranslator::Init(), CTraceData::Init(), CSparseMultiDataSource::Init(), CNetBlastJobDescriptor::Init(), CDeleteSeqFeatCommand::Init(), CResultSet::Init(), CNCBlob::Init(), CNSeq::Init(), CProjectTask::Init_LoadProjects(), CProjectTask::Init_OpenProjects(), CProjectTask::Init_OpenWorkspace(), CProjectTask::Init_RemoveProjects(), CProjectTask::Init_UnLoadProjects(), SBDB_CacheUnitStatistics::InitHistorgam(), impl::CCachedRowInfo::Initialize(), CCacheWriter::InitializeCache(), CCacheReader::InitializeCache(), CSetupFactory::InitializeMegablastDbIndex(), InitializeRemoteBlast(), InitializeSubject(), SNetCacheAPIImpl::InitiatePutCmd(), CBDB_FileCursor::InitMultiFetch(), CWindowManagerService::InitService(), CViewGraphic::InitView(), CPhyTreeView::InitView(), CProjectView::InitView(), CRegionMap::InRange(), CMemStore::Insert(), CRawScoreVector< Key, Score >::insert(), CLinkedMultisetBase< Mapped::key_type >::insertAfter(), CSeriesBase::InsertArray(), CPriority_I::InsertBefore(), CDockLayoutTree::CNode::InsertChild(), CAlnMultiRenderer::InsertColumn(), CAlignMap::InsertIndelRangesForInterval(), CSelListModelImpl< Item >::InsertItems(), CAlignMap::InsertOneToOneRange(), CSeqMap::InsertSegmentGap(), CMenuItem::InsertSubItem(), CLinkedMultisetBase< Mapped::key_type >::insertToStart(), NStr::Int8ToString(), CSeqScores::IntergenicScore(), CRgbaColor::Interpolate(), NStr::IntToString(), CCDSInfo::Invariant(), CNCBitMask< num_bits >::InvertBits(), CProcess::IsAlive(), CNCBitMask< num_bits >::IsBitSet(), CBDB_FieldString::IsBlank(), CNCBlobLockHolder::IsBlobExists(), CGeneModel::isCompatible(), CBDB_FieldString::IsEmpty(), CDockManager::IsFloating(), CClassTypeInfo::IsImplicitNonEmpty(), CDockManager::IsInMainTab(), CGridThreadContext::IsJobCanceled(), CAnnotMapping_Info::IsMapped(), CAnnotMapping_Info::IsMappedPoint(), CQueueClientInfoList::IsMatchingClient(), CSparseAln::IsNegativeStrand(), CTreeNode< TValue, TKeyGetter >::IsParent(), CSparseAln::IsPositiveStrand(), CAppExplorerService::IsPropertiesCmdEnabled(), CBlastBioseqMaker::IsProtein(), CSeqIdAlignBitmap< TSeqAlignSeqIdVec >::IsQueryAnchored(), CNCFSVirtFile::IsReserved(), CAlnMultiModel::IsRowSelected(), CAlnMultiModel::IsRowVisible(), ILocalQueryData::IsValidQuery(), CWorkerNodeJobContext::JobDelayExpiration(), CGridThreadContext::JobDelayExpiration(), CBDB_Env::JoinEnv(), CProcess::Kill(), CProcess::KillGroupById(), CGridGlobals::KillNode(), CFeatureGraph::Layout(), CAlignRowGraphCont::Layout(), LDS_GetSequenceBase(), CGridWorkerNode::LeaveExclusiveMode(), CRgbaColor::Lighten(), CTSE_Chunk_Info::Load(), CColumnScoringMethod::Load(), CGBProjectHandle::Load(), CTextDataSource::LoadAsn(), CAlnMrgApp::LoadBlastDb(), CId1ReaderBase::LoadChunk(), CAnnotWriteConfig::LoadConfig(), CTraceDataProxy::LoadData(), CTextDataSource::LoadFasta(), CTextDataSource::LoadFlatFile(), CBDB_RangeMap< TBV >::LoadFreeList(), CWindowManagerService::LoadLayout(), CBDB_MatrixBvStore< TBV, TM >::LoadMatrixDescriptions(), CUIToolRegistry::LoadSettings(), CEventTablePanel::LoadSettings(), CUIDataSourceService::LoadSettings(), CSelectionPanel::LoadSettings(), CProjectService::LoadSettings(), CAppExplorerService::LoadSettings(), CTextDataSource::LoadXml(), CPackString::Locate(), CNCMMDBPage::Lock(), CTSE_ScopeInfo::SUnloadedInfo::LockTSE(), CDockLayoutTree::CNode::LogPost(), CSeqDBIntCache< TDeflineCacheItem >::Lookup(), DTDLexer::LookupString(), CPrefetchThreadOld::Main(), CHitList::MakeCanonical(), CChainer::CChainerImpl::MakeChains(), MakeCompartment(), CGlTexture::MakeCurrent(), python::CConnection::MakeDBConnection(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::MakeDbFileName(), MakeDriverContext(), CEditScript::MakeEditScript(), CBlobSplitterImpl::MakeID2Chunk(), MakeMaskingBioseq(), CAliToSeq_align::MakeSeq_align(), CSeqGraphicConfigPanel::MakeWidgets(), CMappingRange::Map_Pos(), CMappingRange::Map_Strand(), CAlignMap::MapAtoB(), CNCMMSlab::MarkChainFree(), CNCMMSlab::MarkChainOccupied(), CRegionMap::MatchAndUse(), CHitList::MatchOverlappingSubHits(), CProSplignText::MatchText(), CAppExplorerService::MatchType(), CSeqDBFiltInfo::MembershipBit(), CCacheDemoApp::MemoryCacheDemo(), CQueueDataBase::MountQueue(), CwxTableListCtrl::MoveColumn(), CTreeNode< TValue, TKeyGetter >::MoveSubnodes(), python::CStmtHelper::MoveToNextRS(), CSeqGraphicPane::MZHH_GetScale(), CHitMatrixPane::MZHH_GetScale(), CGlPaneWidgetChildDemo::MZHH_GetScale(), CAlnMultiPane::MZHH_GetScale(), CCrossAlnPane::MZHH_GetScale(), CHostEntryPointImpl< TClassFactory >::NCBI_EntryPointImpl(), NetworkProgram2BlastProgramType(), CAppExplorerService::NewFolder(), CAppExplorerService::NewProjectFolder(), CAppExplorerService::NewWorkspaceFolder(), CTreeIteratorTmpl< CTreeLevelIterator >::Next(), CBDB_ResultStore< TBV >::CResultStoreEnumerator::Next(), CPrefetchTokenOld_Impl::NextBioseqHandle(), CPrefetchTokenOld::NextBioseqHandle(), CStd_seg::OffsetRow(), CDense_diag::OffsetRow(), ON_EVENT(), ON_MESSAGE(), CMessageSlotPopupWindow::OnActionLinkClicked(), CSeqGraphicWidget::OnAddTrack(), CDataTrack::OnAJNotification(), CScoreCache::OnAJNotification(), CFeatureGraph::OnAJNotification(), CSearchToolBase::OnAJNotification(), CDataTrack::OnAJProgress(), CMultiAlignView::OnAlnWidgetSelChanged(), CSparseMultiDataSource::OnAppJobNotification(), CAlnVecMultiDataSource::OnAppJobNotification(), CAppJobTask::OnAppJobNotification(), CAppJobTask::OnAppJobProgress(), CQualityScoringPanel::OnApply(), CProjectTreePanel::OnBeginLabelEdit(), CPhyTreeView::OnBioTreeChanged(), CTableSortMultiChoice::OnBrowseBtn(), CMultiFileInput::OnBrowseBtn(), CBLASTSearchOptionsPanel::OnBrowseDatabases(), CTaskTablePanel::OnCancel(), CSeqGraphicWidget::OnCloneTrack(), CDockPanel::OnCloseButtonClick(), CGBenchGUI::OnCloseClientsRequest(), CWindowManager::OnCloseClientsRequestEvent(), CDockManager::OnCloseDockable(), CProjectTreePanel::OnContextMenu(), CwxMainFrame::OnCreateGroupMapWidgetClick(), CwxMainFrame::OnCreateMapControlClick(), CwxMainFrame::OnCreateMapControlItems(), CProjectView::OnDecoratePopupMenu(), CTaskTablePanel::OnDetails(), CEventTablePanel::OnDetails(), CMinPanelContainer::OnDockPanelCommand(), CDockManager::OnDrag(), CAlnMultiWidget::OnDSChanged(), CDockManager::OnEndDrag(), CProjectTreePanel::OnEndLabelEdit(), CEventHandler::OnEvent(), CDockManager::OnFloatingFrameActivateEvent(), CFileLoadManager::OnFormatChanged(), CTextDataSource::OnJobNotification(), CAppJobEventTranslator::OnJobStateChanged(), CSeqMarkHandler::OnLeftDown(), CAlnMultiHeaderHandler::OnLeftDown(), CEventRecordDetailsDlg::OnLink(), CDataMiningPanel::OnMenuEvent(), CAlnMultiHeaderHandler::OnMotion(), CDockContainer::OnMouseMove(), CMinimapHandler::OnMouseWheel(), CSniffReader::OnObjectFoundPost(), CNCMessageHandler::OnOpen(), CWindowManager::OnPostCommand(), CTextDataSource::OnProgress(), CSearchToolBase::OnProgress(), CPhyTreeView::OnProjectChanged(), CMultiAlignView::OnProjectChanged(), CAppExplorerService::OnProperties(), CSeqGraphicWidget::OnRemoveTrack(), CGBenchGUI::OnRestoreLayout(), CFrameworkDemoGUI::OnRestoreLayoutClick(), CAlnMultiWidget::OnSetAsDefaultMethod(), CAlnSpanWidget::OnSettings(), CAlnMultiWidget::OnShowMethodDlg(), CProjectView::OnShowPopupMenu(), CDockContainer::OnTabClosePressed(), CCompositeAppTask::OnTaskEvent(), CLDS_CoreObjectsReader::OnTopObjectFoundPost(), CNetBLAST_DMSearchForm::OnUpdate(), CTaskView::OnUpdate(), CStatusBarService::OnUpdate(), CEventView::OnUpdate(), CSelectionView::OnUpdate(), CProjectTreeView::OnUpdate(), CAppExplorerService::OnUpdate(), CAppTaskServiceSlot::OnUpdate(), CDockContainer::OnUpdateTabOrder(), CMinPanelContainer::OnUpdateWindowCommand(), CWindowManager::OnUpdateWindowCommand_Client(), CProjectTreeView::OnWidgetSelChanged(), CObjectIStream::Open(), CLDS_Database::Open(), CSeqDBRawFile::Open(), CGlPane::Open(), ctlib::Command::Open(), CNCFSVirtFile::Open(), impl::CBaseCmd::OpenCursor(), CObjectIStream::OpenFromBuffer(), OpenStream(), CObjectOStreamXml::OpenTagEndBack(), CMemoryLineReader::operator *(), CStreamLineReader::operator *(), CCacheBlobStream::operator *(), CSparse_CI::operator *(), CSeqdesc_CI::operator *(), CAlign_CI::operator *(), CSparseIterator::operator *(), CAlnVecIterator::operator *(), SSeqDB_SeqSrc_Data::operator *(), operator *(), CSeq_annot_CI::operator *(), CPriority_I::operator *(), CAnnot_CI::operator *(), CObjPoolGuard< TObjPool >::operator *(), CNetScheduleKeys::const_iterator::operator *(), operator *=(), CBDB_FieldString::operator const char *(), CBDB_FieldFixedByteString::operator const char *(), CObject::operator delete(), CObject::operator new(), CNCMMBigBlockSet::operator new(), CSeqDBAtlas::RegionMapLess::operator()(), CQueryTreePrintFunc::operator()(), CPrelimSearchRunner::operator()(), CCacheElement_Less< TCacheElementPtr >::operator()(), CNcbiMatrix< T >::operator()(), CImage::operator()(), CAlnSeqIdsExtract< TAlnSeqId >::operator()(), IDBServiceMapper::SDereferenceLess::operator()(), operator+(), CBufferedLineReader::operator++(), CSparse_CI::operator++(), CSeqdesc_CI::operator++(), CSeq_annot_CI::operator++(), CPriority_I::operator++(), CSparseIterator::operator++(), CAlnVecIterator::operator++(), CWigBufferedLineReader::operator++(), CAlnPos_CI::operator++(), CAnnot_CI::operator++(), operator+=(), operator-(), CAlnPos_CI::operator--(), CAnnot_CI::operator--(), operator-=(), CSparse_CI::operator->(), CSeqdesc_CI::operator->(), CAlign_CI::operator->(), CSparseIterator::operator->(), CAlnVecIterator::operator->(), SSeqDB_SeqSrc_Data::operator->(), CSeq_annot_CI::operator->(), CAnnot_CI::operator->(), CObjPoolGuard< TObjPool >::operator->(), CSeqMapSwitchPoint::operator<(), operator<<(), CSeqdesc_CI::operator=(), CSeq_descr_CI::operator=(), CRangeMapIterator< Traits >::operator==(), CSimpleBufferT< T, ResizeStrategy >::operator[](), CNcbiMatrix< T >::operator[](), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::operator[](), CSeqAlignSeqIdVec< TSeqAlignVec, TSeqIdPtrComp, TSeqIdPtr >::operator[](), CRWStreambuf::overflow(), CConn_Streambuf::overflow(), CCgiObuffer::overflow(), CSeqportUtil_implementation::Pack(), CBDB_BufferManager::Pack(), PairTreeTraceNode(), CSeq_annot_SNP_Info_Reader::ParseAnnot(), CNetServProtoParserBase::ParseCommand(), ParseTypeString(), ParseVersionString(), CIStreamBuffer::PeekFindChar(), CStringReader::PendingCount(), CCgiEntryReader::PendingCount(), CSeqDBIsam::PigToOid(), CSeqDBAliasStack::Pop(), PopFrontEventHandler(), impl::CConnection::PopMsgHandler(), SSeqMapSelector::PopResolve(), CEventHandler::Post(), CFrameworkDemoGUI::PostCreateWindow(), CGBenchGUI::PostCreateWindow(), CGnomonAnnotator::Predict(), CDataSource::Prefetch(), CBlastFormatUtil::PrintAsciiPssm(), CBlastFormat::PrintEpilog(), printGFF3(), CGuideTree::PrintNewickTree(), CAlnMapPrinter::PrintNumRow(), CObjectOStreamXml::PrintTagName(), CObjectsSniffer::Probe(), CProcessor_ExtAnnot::Process(), CWinMaskCountsGenerator::process(), CPsiBlastInputData::Process(), CDockPanel::ProcessEvent(), CNetScheduleHandler::ProcessMsgRequest(), CBDB_ResultStore< TBV >::CResultStoreEnumerator::ProcessNewFetch(), ProductToSource(), ProgramNameToEnum(), CGlPane::Project(), CGlPane::ProjectX(), CGlPane::ProjectY(), CPromote::PromoteCdregion(), CPromote::PromoteFeatures(), CPromote::PromotePub(), CPromote::PromoteRna(), PsiBlastAddAncillaryPssmData(), PsiBlastComputePssmFromAlignment(), PsiBlastComputePssmScores(), PsiBlastSetupScoreBlock(), impl::CConnection::PushMsgHandler(), SSeqMapSelector::PushResolve(), CResourcePool_Base< string, CNoLock, CResoursePool_NewClassFactory< string > >::Put(), CDeleteQueue< Key, Value >::Put(), CNCMMChainsPool::PutChain(), CIdDeMux< TBV, TBVFact >::PutDimVector(), CGridThreadContext::PutFailure(), CBDB_BlobDictionary< Key >::PutKey(), CBDB_PropertyDictionary< PropKey, PropValue >::PutKey(), CWorkerNodeJobContext::PutProgressMessage(), CGridThreadContext::PutProgressMessage(), CGridThreadContext::PutResult(), CQueue::PutResultGetJob(), CNlmZipReader::Read(), CResultSet::Read(), CDBAPI_CacheIReader::Read(), CSQLITE_Blob::Read(), CBDB_Cache::Read(), CStringReader::Read(), CCgiEntryReader::Read(), CNCBlob::Read(), CNCFSVirtFile::Read(), CBufferedSockReaderWriter::Read(), CNCBlobStorage::ReadBlobInfo(), CNCDBFile::ReadBlobInfo(), CObjectIStream::ReadChoice(), CNCDBFile::ReadChunkValue(), CLDS_GBReleaseReadHook::ReadClassMember(), CBDB_File::ReadCursor(), CPhrap_Seq::ReadData(), CVariantInfoFunctions::ReadDelayedVariant(), CObjectIStreamXml::ReadEnum(), CNCFSOpenFile::ReadFirstPage(), readGFF3Gap(), CMemberInfoFunctions::ReadHookedMember(), CVariantInfoFunctions::ReadHookedVariant(), SBDB_BvStore_Id< TBV >::ReadIds(), CVariantInfoFunctions::ReadInlineVariant(), CNetServerMultilineCmdOutput::ReadLine(), CMemberInfoFunctions::ReadMissingHookedMember(), CMemberInfoFunctions::ReadMissingOptionalMember(), CMemberInfoFunctions::ReadMissingParentClass(), CMemberInfoFunctions::ReadMissingSimpleMember(), CMemberInfoFunctions::ReadMissingWithSetFlagMember(), CObjectIStreamXml::ReadName(), CVariantInfoFunctions::ReadObjectPointerVariant(), CMemberInfoFunctions::ReadParentClass(), CVariantInfoFunctions::ReadPointerVariant(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::ReadRealloc(), CMemberInfoFunctions::ReadSimpleMember(), CVariantInfoFunctions::ReadSubclassVariant(), CPhrap_Contig::ReadTag(), CPhrap_Read::ReadTag(), CBDB_BvStore< TBV >::ReadVector(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::ReadVector(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::ReadVectorById(), CMemberInfoFunctions::ReadWithSetFlagMember(), CUndoManager::Redo(), CWindowManagerService::RefreshClient(), CObjectConverter::Register(), CUICommandRegistry::RegisterCommand(), CAppJobDispatcher::RegisterEngine(), RegisterEntryPoint(), CSeqDBAtlas::RegisterExternal(), CViewManagerService::RegisterFactory(), CLayoutTrack::RegisterIconImage(), CCachedSequence::RegisterIds(), CWorkbench::RegisterService(), CUIToolRegistry::RegisterTemplateTool(), CUIToolRegistry::RegisterTool(), CObjectIStreamXml::RejectedName(), CReaderAllocatedConnection::Release(), CObjectManager::ReleaseDataSource(), CReaderRequestResult::ReleaseLoadLock(), CNCBlobLockHolder::ReleaseLock(), CInitMutexPool::ReleaseMutex(), python::CCallableStmtHelper::ReleaseStmt(), python::CStmtHelper::ReleaseStmt(), CInterfaceObjectLocker< Interface >::Relock(), CCDSInfo::Remap(), CLinkReduce< TBV, TMapFunc1, TMapFunc2 >::Remap(), RemapToQueryLoc(), CSeq_annot_Info::Remove(), CDockManager::Remove(), CAppExplorerService::Remove(), CLinkedMultisetBase< Mapped::key_type >::removeAfter(), CNCMMDBPagesHash::RemoveAllPages(), CProjectService::RemoveAllProjectViews(), CTSE_ScopeInfo::RemoveAnnot(), CDockLayoutTree::CNode::RemoveChild(), CProjectFolder::RemoveChildFolder(), CProjectFolderPrx::RemoveChildFolder(), CDockPanel::RemoveClient(), CNcbiMatrix< T >::RemoveCol(), CMenuService::RemoveContributor(), CDataMiningService::RemoveContributor(), CDemoHandler_EmptyOnOverflow::RemoveElement(), CTSE_ScopeInfo::RemoveEntry(), CUserTypeExtensionPoint::RemoveExtension(), CScope_Impl::RemoveFromHistory(), CLinkedMultisetBase< Mapped::key_type >::removeFromStart(), CBioseq_ScopeInfo::RemoveId(), CScopeInfo_Base::RemoveInfoLock(), CQueueWorkerNodeList::RemoveJob(), CNCMMDBPagesHash::RemovePage(), CProjectService::RemoveProjectView(), CDense_seg::RemovePureGapSegs(), CSeqDBAtlas::RemoveRegionFlusher(), CNcbiMatrix< T >::RemoveRow(), CGBWorkspace::RemoveScopeFromIndex(), CSeqMap::RemoveSegment(), CWindowManagerService::RemoveToolBarContext(), CScope_Impl::RemoveTopLevelSeqEntry(), CDockContainer::RemoveWindow(), CBDB_RawFile::Rename(), CWriteDB_Volume::RenameSingle(), CWriteDB_File::RenameSingle(), CSequenceTickGraph::Render(), CHitMatrixSeqGraph::Render(), CAlnMultiHeader::Render(), CScatterGraph::Render(), CPieGraph::Render(), CComboChart::Render(), CGraphDotMarker::RenderMarker(), CAsnElementPrimitive::RenderValue(), CAsnElementBlockStart::RenderValue(), CAsnElementBlockCollapsed::RenderValue(), CBDB_RawFile::Reopen(), CSeq_annot_Info::Replace(), CDockLayoutTree::CNode::ReplaceChild(), ReplaceVisibleChar(), CThreadPool_Impl::RequestExclusiveExecution(), SAnnotObjectsIndex::ReserveMapSize(), CUTTPWriter::Reset(), CRandom::Reset(), CSeq_loc_Conversion::Reset(), CTSE_LoadLock::Reset(), CUIToolRegistry::Reset(), CSQLITE_Statement::Reset(), CSparseKmerCounts::Reset(), CTreeIteratorTmpl< CTreeLevelIterator >::Reset(), CBioseq_Base_Info::ResetAnnot(), CTSE_ScopeInfo::ResetEntry(), CHookDataBase::ResetGlobalHook(), CLocalHookSetBase::ResetHook(), CBioseq_ScopeInfo::ResetId(), CHookDataBase::ResetLocalHook(), CMenuService::ResetMenuBar(), CTSE_ScopeInfo::ResetTSE_Lock(), DTDElement::ResetType(), CSimpleBufferT< T, ResizeStrategy >::resize(), CScannerFunctorArgN::ResizeVectors(), SRelLoc::Resolve(), CPluginManager_DllResolver::Resolve(), CGBDataLoader::ResolveConflict(), CPluginManager_DllResolver::ResolveFile(), pythonpp::CErrorStackElem::Restore(), RestoreModelAttributes(), RestoreModelFromInternalGnomonFeature(), RestoreModelFromPublicMrnaFeature(), RestoreModelMethod(), RestoreModelReadingFrame(), CFrameworkDemoGUI::RestoreWindowLayout(), CGBenchGUI::RestoreWindowLayout(), CMySQL_LangCmd::Result(), CRegionMap::RetRef(), CSeqDBAtlas::RetRegion(), CObjPool< TObjType, TObjFactory >::Return(), CNCBlobStorage::ReturnFile(), CGridThreadContext::ReturnJob(), CSeqManip::Reverse(), CSeqportUtil_implementation::Reverse(), CSeqManip::ReverseComplement(), CSeqportUtil_implementation::ReverseComplement(), CEditAppTask::Run(), CCompositeAppTask::Run(), CAppTask::Run(), CAppJobTask::Run(), CProjectServiceTestJob::Run(), CDataLoadingAppTask::Run(), CThreadedServer::Run(), CServer::Run(), CTblastxApp::Run(), CTblastnApp::Run(), CRPSTBlastnApp::Run(), CRPSBlastApp::Run(), CBlastxApp::Run(), CBlastpApp::Run(), CBlastnApp::Run(), CMergeVolumes::Run(), CBlastTracebackSearch::Run(), CPsiBlastImpl::Run(), CLocalBlast::Run(), CGridThreadContext::RunJobs(), s_AddBioseqToBioseq(), s_AddBioseqToNucProtSet(), s_AddBioseqToPartsSet(), s_AddMask(), s_AddPartToSegmentedBioseq(), s_AddProtToNuc(), s_AddShift(), s_AdjustFirstContext(), s_AdjustFrequencyRatiosMatrixToMatchScoreMatrix(), s_AdjustInsert(), s_AdjustNegativeSubjFrameInBlastn(), s_AllBlobsAreLoaded(), s_BLAST_OneSubjectResults2CSeqAlign(), s_BlastHSP2SeqAlign(), s_BlastResults2SeqAlignDatabaseSearch_OMF(), s_BlastResults2SeqAlignSequenceCmp_OMF(), s_c2cxxErrorHandler(), s_CalculateScoreVectorSize(), s_CollectSeqAlignData(), s_Complement(), s_Contains(), s_Convert(), s_ConvertTaskResult(), s_CountFields(), s_CreateDenseg(), s_CreateEmptySeq_align_set(), s_CreateRotatedFont(), s_CreateSeqLocMapper(), s_CreateStdSegs(), s_DoReadsome(), s_DumpHeader(), s_EndOfReference(), s_EndOfTag(), s_ExportSearchStrategy(), s_ExtractAncillaryData(), s_FDir2DBFlag(), s_FillMaskLocFromBlastResults(), s_FindDistAsMax(), s_FindDistAsMean(), s_FindLeafDistances(), s_FindMaxDistFromElem(), s_FindNodeDistance(), s_FindSumDistFromElem(), s_Fingerprint_Byte_graph(), s_Fingerprint_Dbtag(), s_Fingerprint_Dense_diag(), s_Fingerprint_Dense_seg(), s_Fingerprint_Feat_id(), s_Fingerprint_Gb_qual(), s_Fingerprint_Giimport_id(), s_Fingerprint_Int_graph(), s_Fingerprint_Object_id(), s_Fingerprint_Packed_seg(), s_Fingerprint_Packed_seqint(), s_Fingerprint_Packed_seqpnt(), s_Fingerprint_Patent_seq_id(), s_Fingerprint_PDB_seq_id(), s_Fingerprint_Product_pos(), s_Fingerprint_Prot_pos(), s_Fingerprint_Real_graph(), s_Fingerprint_Seq_align(), s_Fingerprint_Seq_align_set(), s_Fingerprint_Seq_bond(), s_Fingerprint_Seq_feat(), s_Fingerprint_Seq_graph(), s_Fingerprint_Seq_id(), s_Fingerprint_Seq_interval(), s_Fingerprint_Seq_loc(), s_Fingerprint_Seq_loc_equiv(), s_Fingerprint_Seq_loc_mix(), s_Fingerprint_Seq_point(), s_Fingerprint_Sparse_align(), s_Fingerprint_Sparse_seg(), s_Fingerprint_Spliced_exon(), s_Fingerprint_Spliced_exon_chunk(), s_Fingerprint_Spliced_seg(), s_Fingerprint_Std_seg(), s_Fingerprint_Textseq_id(), s_FixSeqData(), s_FormatCBlastDBSeqID(), s_FormatCitBook(), s_FormatCitBookArt(), s_FormatCitGen(), s_FormatCitSub(), s_FormatJournal(), s_FormatPatent(), s_FormatThesis(), s_GetAlignmentLengths(), s_GetBioseq(), s_GetBioseqLabelType(), s_GetBioseqSetLabelType(), s_GetBlastnMask(), s_GetCharType(), s_GetCountIdentityMismatch(), s_GetDate(), s_GetDetails(), s_GetDigits(), s_GetEncodeValues(), s_GetGenProdContent(), s_GetInitialsFromFirst(), s_GetLString(), s_GetNucProtContent(), s_GetQueryBioseq(), s_GetSegsetContent(), s_GetSequence(), s_GuessMol(), s_IDbSrcInit(), s_IDbSrcNew(), s_ImportDatabase(), s_ImportSubjects(), s_IndexToStrand(), s_InitCSeqDbSeqInfoSrc(), s_InitializeKarlinBlk(), s_InitNewSeqDbSrc(), s_InvalidateQueryContexts(), s_IsDuplicateFeatures(), s_MakeTwoLeafTree(), s_MapRangeData(), s_MB_IdbGetResults(), s_MultiSeqGetAvgLength(), s_MultiSeqGetIsProt(), s_MultiSeqGetMaxLength(), s_MultiSeqGetNextChunk(), s_MultiSeqGetNumSeqs(), s_MultiSeqGetSeqLen(), s_MultiSeqGetSequence(), s_MultiSeqIteratorNext(), s_MultiSeqReleaseSequence(), s_MultiSeqSrcNew(), s_NumToBase256(), s_NumToOctal(), s_OctalToNum(), s_OOFBlastHSP2SeqAlign(), s_PositionAsString(), s_QualClassName(), s_QueryFactoryGetAvgLength(), s_QueryFactoryGetIsProt(), s_QueryFactoryGetMaxLength(), s_QueryFactoryGetNextChunk(), s_QueryFactoryGetNumSeqs(), s_QueryFactoryGetSeqLen(), s_QueryFactoryGetSequence(), s_QueryFactoryIteratorNext(), s_QueryFactoryReleaseSequence(), s_QueryFactorySrcNew(), s_QueryInfo_SetContext(), s_ReadGiList(), s_RemapToSubjectLoc(), s_ReplaceProvidedSeqIdsForRequestedSeqIds(), s_RescaleTree(), s_RestrictSeqLocs_Multiframe(), s_Reverse(), s_ReverseComplement(), s_ScaleTreeEdges(), s_SeqAlignToBlastSeqLoc(), s_SeqAlignToXMLHit(), s_SeqDBInit(), s_SeqDbIteratorNext(), s_SeqDBMapNA2ToNA8(), s_SeqDbReleaseSequence(), s_SeqDbResetChunkIterator(), s_SeqDbSrcNew(), s_SeqDbSrcSharedNew(), s_SetLeafIds(), s_SetSplitQuerySeqInterval(), s_SkipDigits(), s_SQLITE_FS_Access(), s_SQLITE_Mem_Malloc(), s_TruncateSpaces(), s_UnpackUserField(), s_Validate(), s_WaitNotification(), CTypeConverter< T >::SafeCast(), SafeSetupQueries(), SafeSetupQueryInfo(), CBDB_RawFile::SafeTruncate(), SAlignSmearSort::SAlignSmearSort(), sAssertMainThread(), CGBProjectHandle::Save(), CBDB_RangeMap< TBV >::Save(), CProcessor_St_SE::SaveBlob(), CProcessor_ID1::SaveBlob(), CFileDBEngine::SaveCommand(), CAnnotWriteConfig::SaveConfig(), CProcessor_ID2::SaveData(), CProcessor_ID2AndSkel::SaveDataAndSkel(), CWindowManagerService::SaveLayout(), CProcessor_St_SE::SaveNoBlob(), CLDS_Object::SaveObject(), CEventTablePanel::SaveSettings(), CUIDataSourceService::SaveSettings(), CSelectionPanel::SaveSettings(), CProjectService::SaveSettings(), CAppExplorerService::SaveSettings(), CProcessor_St_SE_SNPT::SaveSNPBlob(), SaveTableSettings(), CProjectService::SaveWorkspace(), SCigarAlignment::SCigarAlignment(), CLDS_Query::ScreenSequence(), CCgiEntry::SData::SData(), CScope_Impl::SelectNone(), CTSE_ScopeInfo::SelectSeq(), CScope_Impl::SelectSeq(), CTSE_ScopeInfo::SelectSet(), CScope_Impl::SelectSet(), CObjectOStreamXml::SelfCloseTagEnd(), CEventHandler::Send(), impl::CBaseCmd::Send(), CUTTPWriter::SendChunk(), CUTTPWriter::SendControlSymbol(), impl::CBaseCmd::SendDataCmd(), CBrowserUtils::SendToBrowser(), SeqDB_GetStdOrdUnaligned(), SeqDB_ReadMemoryGiList(), CBDB_ExtBlobMap::Serialize(), CBDB_BlobMetaContainer::Serialize(), CMappedFeat::Set(), CHeapScope::Set(), CMappedGraph::Set(), pythonpp::CObject::Set(), IRWRegistry::Set(), CBDB_FieldSimpleFloat< float >::Set(), CBDB_FieldSimpleInt< Uint2 >::Set(), CCDSInfo::Set5PrimeCdsLimit(), CWindowManagerService::SetAdvisor(), CSparseMultiDataSource::SetAnchor(), CTextTableModel::SetAttachment(), CBlastOptionsLocal::SetBestHitOverhang(), CBlastOptionsLocal::SetBestHitScoreEdge(), CSeqDB_BitSet::SetBit(), CNCBlobLockHolder::SetBlobOwner(), CNCBlobLockHolder::SetBlobTTL(), CTSE_Info::SetBlobVersion(), CBDB_RawFile::SetBtreeMinKeysPerPage(), CRWStreambuf::setbuf(), CBDB_Field::SetBufferManager(), CBDB_Field::SetBufferSize(), CNCMMDBPage::SetCache(), CODBC_CursorResult::SetCDBResultPtr(), CGeneModel::SetCdsInfo(), CDBConnParams::SetChildObj(), CObjectInfo::SetChoiceVariant(), CNCStatTimer::SetChunkSize(), CBDB_IdFile::SetCmp(), CBDB_File::SetCmp(), CBDB_LobFile::SetCmp(), CBlastSeqVectorFromCSeq_data::SetCoding(), CTextSelHandler::SetColor(), CRuler::SetColor(), CLinearSelHandler::SetColor(), CAlnMultiRenderer::SetColumnsByStyle(), CAlnMultiRenderer::SetColumnUserData(), CAlnMultiRenderer::SetColumnVisible(), CMapControl::SetColumnWidth(), CDB_ResultProcessor::SetConn(), CIdDeMux< TBV, TBVFact >::SetCoordinates(), CBlastOptionsLocal::SetCullingLimit(), CImage::SetData(), CDelayBuffer::SetData(), CDbapiSampleApp::SetDatabaseParameter(), CAliasTypeInfo::SetDataOffset(), CAlnMultiWidget::SetDataSource(), CSeqDBMapStrategy::SetDefaultMemoryBound(), CAnchoredAln::SetDim(), CGBProjectHandle::SetDirty(), CObjectList::SetDouble(), CDbapiSampleApp::SetDriverName(), CSeq_loc_Conversion::SetDstLoc(), CTSE_ScopeInfo::SetEditTSE(), CBlastOptions::SetEffectiveSearchSpace(), CBDB_Env::SetErrPrefix(), CStatusBarService::SetEventDisplayTime(), CCgiCookie::SetExpTime(), CBioTree< TBioNode >::CBioNode::SetFeature(), CNCFileSystem::SetFileInitialized(), CGBWorkspace::SetFilename(), CWorkspaceFormatLoadManager::SetFilenames(), CMenuService::SetFrame(), CDockContainer::SetFullTree(), CBlastAdvancedProteinOptionsHandle::SetGappedExtensionDefaults(), CChainer::CChainerImpl::SetGenomicRange(), CRuler::SetGeometryParam(), CHookDataBase::SetGlobalHook(), CScoreCache::SetGradNumber(), CBDB_RawFile::SetHash(), CBDB_IdBlobFile::SetHash(), CBDB_RawFile::SetHashFillFactor(), CBDB_RawFile::SetHashNelem(), CSeqDB_ColumnEntry::SetHaveMap(), impl::CBaseCmd::SetHints(), CTL_BCPInCmd::SetHints(), CLocalHookSetBase::SetHook(), CRuler::SetHorizontal(), CTextTableModel::SetIcon(), CLockVectorGuard< TLockVect >::SetId(), CQueryParserEnv::SetIN_Context(), CDataType::SetInChoice(), SAnnotObjectsIndex::SetIndexed(), CGenBankLoadOptionPanel::SetInput(), CNetBLASTLoadOptionPanel::SetInput(), CDataType::SetInSet(), CObjectList::SetInteger(), CWorkerNodeJobContext::SetJobRunTimeout(), CGridThreadContext::SetJobRunTimeout(), CHitList::SetKeepHit(), CAnnotObject_Info::SetKey(), CSeq_point::SetLeftOf(), CCachedSeqDataForRemote::SetLength(), COpenRange< TSignedSeqPos >::SetLength(), COpenRange< TSignedSeqPos >::SetLengthDown(), CLoadInfoLock::SetLoaded(), CTSE_LoadLock::SetLoaded(), CDataSource::SetLoaded(), CLoadInfoSeq_ids::SetLoadedAccVer(), CLoadInfoSeq_ids::SetLoadedGi(), CObjectManager::SetLoaderOptions(), CHookDataBase::SetLocalHook(), CRunToolDlg::SetManagers(), COpenDlg::SetManagers(), CAnnotMapping_Info::SetMappedPartial_from(), CAnnotMapping_Info::SetMappedPartial_to(), CAnnotMapping_Info::SetMappedPoint(), CAnnotMapping_Info::SetMappedSeq_align(), CAnnotMapping_Info::SetMappedSeq_align_Cvts(), CAnnotMapping_Info::SetMappedSeq_feat(), CAnnotMapping_Info::SetMappedSeq_id(), CAnnotMapping_Info::SetMappedSeq_loc(), CAnnotMapping_Info::SetMappedStrand(), CBlastQueryVector::SetMaskedRegions(), CMapControl::SetMaxItemHeight(), CUIToolRegistry::SetMaxMRUSize(), CLoadInfoMap< Key, Info >::SetMaxSize(), CBDB_BufferManager::SetMaxVal(), CBDB_BufferManager::SetMinVal(), CSequenceTickGraph::SetModelRect(), CSequenceTextGraph::SetModelRect(), CRuler::SetModelRect(), CDataValue::SetModule(), CModuleContainer::SetModuleContainer(), CTypeStrings::SetModuleName(), CUIToolRegistry::SetMRUToolNames(), SAnnotObjectsIndex::SetName(), CBDB_Field::SetName(), CBDB_BufferManager::SetNull(), CBDB_Field::SetNull(), CBDB_BufferManager::SetNullable(), CBDB_BufferManager::SetNullBit(), CDotMatrixPanel::SetObjects(), CBDB_Cache::SetOverflowLimit(), CBDB_RawFile::SetPageSize(), IGlEventHandler::SetPane(), python::CCallableStmtHelper::SetParam(), python::CStmtHelper::SetParam(), CHitMatrixDataSource::SetParams(), CBLASTSearchOptionsPanel::SetParams(), CDataType::SetParent(), CClassTypeInfo::SetParentClass(), CSeq_interval::SetPartialStart(), CSeq_interval::SetPartialStop(), CCurveCubic::SetPoint(), CCurveBezier::SetPoint(), CBlastOptionsLocal::SetProgram(), CGBProjectHandle::SetProject(), CFeatureGraph::SetProperties(), CChoicePointerTypeInfo::SetPtrIndex(), CClassTypeInfo::SetRandomOrder(), CPhrap_Sequence::SetRead(), CSeqMap::SetRegionInChunk(), CRegistryFile::SetRegistry(), CSplitter::SetResizableCell(), CSeq_point::SetRightOf(), CLayout::SetRow(), CHTML_tr_Cache::SetRowNode(), CRowStyleCatalog::SetRowStyle(), CRowStyleCatalog::SetRowTypeStyle(), CGBProjectHandle::SetScope(), CGBProject_ver2::SetScope(), CGBProject::SetScope(), CCDSInfo::SetScore(), SetScores(), SAnnotSelector::SetSearchExternal(), CRandom::SetSeed(), CSeqMap::SetSegmentData(), CSeqMap::SetSegmentGap(), CSeqMap::SetSegmentRef(), CChoiceTypeInfo::SetSelectDelayFunction(), CTaxTreeBrowser::SetSelectedUids(), CSeq_annot_SplitInfo::SetSeq_annot(), CSeq_data_SplitInfo::SetSeq_data(), CAppTaskService::SetServiceLocator(), CMemberInfo::SetSetFlag(), CRgbaGradColorTable::SetSize(), CBuildDatabase::SetSourceDb(), CTSE_Split_Info::SetSplitVersion(), CCDSInfo::SetStart(), CNcbiApplication::SetStdioFlags(), CBDB_FieldFixedByteString::SetStdString(), CObjectList::SetString(), CPackString::SNode::SetString(), CTextTableModel::SetStringValueAt(), CAlnMultiWidget::SetStyleCatalog(), SPluginParams::SetSubNode(), CBuildDatabase::SetTaxids(), CBDB_Env::SetTransactionMax(), CBioTree< TBioNode >::SetTreeNode(), CSeq_interval::SetTruncatedStart(), CSeq_interval::SetTruncatedStop(), CTSE_ScopeInfo::SetTSE_Lock(), DTDElement::SetType(), CPssmEngine::SetUngappedStatisticalParams(), CDiagContext::SetupDiag(), SetupQueries_OMF(), SetupQueryInfo_OMF(), SetupSubjects_OMF(), CEnumeratedTypeInfo::SetValueInt4(), CEnumeratedTypeInfo::SetValueInt8(), SHitColoringParams::SetValueRange(), CEnumeratedTypeInfo::SetValueUint4(), CEnumeratedTypeInfo::SetValueUint8(), CDockLayoutTree::CNode::SetWindow(), CGlPane::SetZoomFactor(), CSeqGraphicPane::SHH_GetModelByWindow(), CPhyloTreePane::SHH_GetModelByWindow(), CHitMatrixPane::SHH_GetModelByWindow(), CGlPaneWidgetChildDemo::SHH_GetModelByWindow(), CAlnMultiPane::SHH_GetModelByWindow(), CCrossAlnPane::SHH_GetModelByWindow(), CSeqGraphicPane::SHH_GetWindowByModel(), CPhyloTreePane::SHH_GetWindowByModel(), CHitMatrixPane::SHH_GetWindowByModel(), CGlPaneWidgetChildDemo::SHH_GetWindowByModel(), CAlnMultiPane::SHH_GetWindowByModel(), CCrossAlnPane::SHH_GetWindowByModel(), CPushback_Streambuf::showmanyc(), CConn_Streambuf::showmanyc(), CViewManagerService::ShowSingletonView(), CAlignMap::ShrinkToRealPoints(), CWorkbench::ShutDown(), CViewManagerService::ShutDownService(), CCacheDemoApp::SimpleCacheDemo(), CObjectIStreamXml::SkipAttributeValue(), AbstractLexer::SkipChars(), CReadInSkipClassMemberHook< Member >::SkipClassMember(), CMemberInfoFunctions::SkipHookedMember(), CVariantInfoFunctions::SkipHookedVariant(), CMemberInfoFunctions::SkipMissingHookedMember(), CMemberInfoFunctions::SkipMissingParentClass(), CMemberInfoFunctions::SkipMissingSimpleMember(), CVariantInfoFunctions::SkipNonObjectVariant(), CReadInSkipObjectHook< Object >::SkipObject(), CVariantInfoFunctions::SkipObjectPointerVariant(), CBlastDbBlob::SkipPadBytes(), CObjectIStreamXml::SkipQDecl(), CTreeIteratorTmpl< CTreeLevelIterator >::SkipSubTree(), CObjectIStreamXml::SkipWSAndComments(), SNetServiceImpl::SNetServiceImpl(), CPhyloTreePane::SoftUpdate(), SourceToProduct(), CBlobSplitterImpl::SplitBioseq(), SplitChunk(), CBlobSplitterImpl::SplitPieces(), SplitQuery_CalculateNumChunks(), SplitQuery_CreateChunkData(), SplitQuery_SetEffectiveSearchSpace(), sPrepareSeqAlign(), CThreadPoolEngine::StartJob(), CSchedulerEngine::StartJob(), CGBSeqFormatter::StartSection(), ASNLexer::StartString(), CIStreamBuffer::StartSubSource(), CObjectIStreamAsnBinary::StartTagData(), AbstractLexer::StartToken(), CAppJobDispatcher::StateToStr(), CJobStatusTracker::StatusSnapshot(), CJobStatusTracker::StatusStatistics(), CBDB_Volumes::StatusToString(), CNetScheduleAPI::StatusToString(), CSQLITE_Statement::Step(), CBDB_ExtBlobStore< TBV >::StoreBlob(), CSQLITE3_Cache::StoreSynchronous(), NStr::StringToDoubleEx(), CFeatureTypesParser::StringToFeatTypes(), NStr::StringToInt8(), CSeqDBIsam::StringToOids(), NStr::StringToUInt8(), NStr::StringToUInt8_DataSize(), CQueue::SubmitBatch(), CNetScheduleSubmitter::SubmitJobAndWait(), CSeqConvert_imp::Subseq(), SubtractAlnRngCollections(), CTSE_ScopeInfo::SUnloadedInfo::SUnloadedInfo(), CAlignModel::TargetAccession(), CNcbiTestsTreeBuilder::test_suite_finish(), TestEventAttachment(), CBDB_BufferManager::TestNullBit(), CConn_MemoryStream::ToCStr(), SProjectSelectorParams::ToLoadingOptions(), CConn_MemoryStream::ToString(), CConn_MemoryStream::ToVector(), CwxCSVExportDlg::TransferDataFromWindow(), CCdregion_translate::TranslateCdregion(), CProSplignText::TranslateDNA(), TrimAlignment::TrimCodingExonLeft(), TrimAlignment::TrimCodingExonRight(), CGeneModel::TrimEdgesToFrameInOtherAlignGaps(), CDense_seg::TrimEndGaps(), TrimAlignment::TrimProtein(), CBDB_RawFile::Truncate(), NStr::TruncateSpacesInPlace(), NStr::UInt8ToString(), NStr::UIntToString(), CByteStreamBuf::underflow(), CPushback_Streambuf::underflow(), CRWStreambuf::underflow(), CConn_Streambuf::underflow(), CCgiIbuffer::underflow(), CRemoveTSE_EditCommand::Undo(), CUndoManager::Undo(), CAttachAnnot_EditCommand< Annot >::Undo(), CRemove_EditCommand< TEditHandle >::Undo(), CResetValue_EditCommand< TEditHandle, T >::Undo(), CSetValue_EditCommand< TEditHandle, T >::Undo(), CBufferedLineReader::UngetLine(), CMemoryLineReader::UngetLine(), CStreamLineReader::UngetLine(), CWigBufferedLineReader::UngetLine(), CSeqDB_BitSet::UnionWith(), CRWLock::Unlock(), CNCMMDBPage::Unlock(), CLockVector< BV >::Unlock(), CLockVectorGuard< TLockVect >::Unlock(), CInterfaceObjectLocker< Interface >::Unlock(), CInterfaceObjectLocker< Interface >::UnlockRelease(), CObservable::UnlockUpdates(), CBDB_BufferManager::Unpack(), CBDB_Field::Unpack(), UnpackUserObject(), CGlPane::UnProject(), CGlPane::UnProjectHeight(), CGlPane::UnProjectWidth(), CGlPane::UnProjectX(), CGlPane::UnProjectY(), CSeqDBAtlas::UnregisterExternal(), CWorkbench::UnRegisterService(), CNcbiEnvironment::Unset(), CSparseMultiDataSource::UnsetAnchor(), CSeq_annot_Info::Update(), CSeqTextPane::Update(), CPhyloTreePane::Update(), CHitMatrixPane::Update(), CDensityMapDS::Update(), CFeatHistogramDS::Update(), CNetBLAST_DMSearchForm::Update(), impl::CBaseCmd::Update(), CTSE_Info::UpdateAnnotIndex(), CSeq_annot_Info::UpdateAnnotIndex(), CDataSource::UpdateAnnotIndex(), CBioseq_set_Info::UpdateAnnotIndex(), CSparseAln::UpdateCache(), CMemberInfo::UpdateDelayedBuffer(), CVariantInfo::UpdateDelayedBuffer(), CLDS_Object::UpdateFileObjects(), CVariantInfo::UpdateFunctions(), CAlignRangeCollExtender< TColl >::UpdateIndex(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::UpdateInsert(), CAnnotMapping_Info::UpdateMappedSeq_loc(), CWindowManagerService::UpdateMenuBar(), CSeqTableLocColumns::UpdateSeq_loc(), CEventViewModel::UpdateTable(), impl::CBaseCmd::UpdateTextImage(), CDataSource_ScopeInfo::UpdateTSELock(), CBlastQueryFilteredFrames::UseProteinCoords(), CValidError_imp::Validate(), CDockLayoutTree::Validate(), CAlignRangeCollection< CAlignRange< TSeqPos > >::ValidateRanges(), CRegionMap::Verify(), CHit::VerifyHit(), CAlnVwrApp::View10(), CSelectionVisitor::Visit(), CDocumentAccumulator::Visit(), CProcess::Wait(), CNetScheduleExecuter::WaitJob(), CTreeIteratorTmpl< CTreeLevelIterator >::Walk(), CWriteDB_File::Write(), CBinaryListBuilder::Write(), CDBAPI_CacheIWriter::Write(), CSQLITE_Blob::Write(), CBDB_CacheIWriter::Write(), CNCBlob::Write(), CBufferWriter< Buffer >::Write(), CWriteDB_ColumnIndex::WriteBlobIndex(), CObjectOStreamAsnBinary::WriteByte(), CObjectOStreamAsnBinary::WriteClassTag(), CObjectOStreamXml::WriteContainerContents(), WriteDB_EaaToBinary(), WriteDB_IupacaaToBinary(), WriteDB_Ncbi2naToBinary(), WriteDB_Ncbi4naToBinary(), WriteDB_StdaaToBinary(), CVariantInfoFunctions::WriteDelayedVariant(), CObjectOStreamAsnBinary::WriteDouble2(), CObjectOStreamAsn::WriteDouble2(), CNCFSOpenFile::WriteFirstPage(), CMemberInfoFunctions::WriteHookedMember(), CVariantInfoFunctions::WriteHookedVariant(), CVariantInfoFunctions::WriteInlineVariant(), CCmdLineArgList::WriteLine(), CVariantInfoFunctions::WriteObjectPointerVariant(), CMemberInfoFunctions::WriteOptionalMember(), CMemberInfoFunctions::WriteParentClass(), CVariantInfoFunctions::WritePointerVariant(), CWriteDB_Volume::WriteSequence(), CMemberInfoFunctions::WriteSimpleMember(), CVariantInfoFunctions::WriteSubclassVariant(), CNCFileSystem::WriteToFile(), CMemberInfoFunctions::WriteWithDefaultMember(), CMemberInfoFunctions::WriteWithSetFlagMember(), CReader::x_AbortConnection(), CTSE_Chunk_Info::x_AddAnnotType(), CBioseq_Info::x_AddAssemblyChunkId(), CTSE_Chunk_Info::x_AddBioseqId(), CTSE_Split_Info::x_AddBioseqPlace(), CGeneModelTrack::x_AddCDSProduct_FeatsLayout(), CSeqdesc_CI::x_AddChoice(), CReader::x_AddConnection(), CId2Reader::x_AddConnectionSlot(), CId1Reader::x_AddConnectionSlot(), CBlastTabularInfo::x_AddDefaultFieldsToShow(), CArgDescriptions::x_AddDesc(), SBDB_CacheUnitStatistics::x_AddErrGetPut(), CCachedSequence::x_AddFullSeq_data(), CAlnStats< _TAlnIdVec >::x_AddId(), CAppJobDispatcher::x_AddJobRecord(), CEventHandler::x_AddListenerToPool(), CFastaReader::x_AddMultiwayAlignment(), CNCFileSystem::x_AddNewEvent(), CMergedPairwiseAln::x_AddPairwise(), CSourceFeatureItem::x_AddQuals(), CFeatureItem::x_AddQualsBond(), CFeatureItem::x_AddQualsProt(), CFeatureItem::x_AddQualsRegion(), CFeatureItem::x_AddQualsSite(), CMultiAligner::x_AddRpsFreqsToCluster(), CNCMMSizePool::x_AddSetToList(), CWriteDB_IsamIndex::x_AddString(), CWriteDB_IsamIndex::x_AddStringData(), CTaskViewModel::x_AddTasks(), CLDS_BuildIdIdx::x_AddToIdx(), CNCMMDBPage::x_AddToLRUImpl(), CTracingHandler::x_AddTrace(), CAnnot_Collector::x_AddTSE(), CGlPane::x_AdjustVisibleRect(), CStreamLineReader::x_AdvanceEOLUnknown(), CNCMMCentral::x_AllocAlignedLongWay(), CScoringJob::x_AllocBuffer(), CReader::x_AllocConnection(), CwxAnnotConfigDlg::x_AnnotBrowserSelectionChanged(), x_Append2To2(), x_Append4To4(), x_Append8To2(), x_AppendAnyTo2(), x_AppendAnyTo4(), CTar::x_AppendFile(), x_AppendGapTo4(), x_AppendRandomTo2(), x_ApplyCmd(), CSelectionControl::x_AssertIndexValid(), CGlPane::x_AssertNotOpen(), CGlPane::x_AssertOrtho(), CObjectListTableModel::x_AssertRowValid(), CSparseAlignment::x_AssertRowValid(), CObjectList::x_AssertValidColumn(), CObjectList::x_AssertValidRow(), CTSE_Lock::x_Assign(), CNCMessageHandler::x_AssignCmdParams(), CGBDocument::x_AssignViewIndex(), CScope_Impl::x_AttachAnnot(), CBioseq_Base_Info::x_AttachAnnot(), CMultiAligner::x_AttachClusterTrees(), CScope_Impl::x_AttachEntry(), CBioseq_set_Info::x_AttachEntry(), CTSE_Info_Object::x_AttachObject(), CProjectPrx::x_AttachProjectItems(), CScope_Impl::x_AttachToOM(), CScopeInfo_Base::x_AttachTSE(), CGBDocument::x_AttachView(), CFileLoadManager::x_AutoGuessFormat(), CTar::x_Backspace(), CTSE_Info_Object::x_BaseParentAttach(), CFeatCheckBrowser::x_BrowserClicked(), CScoringJob::x_BufferGetColumn(), CScoringJob::x_BufferGetSeq(), CMultiAligner::x_BuildAlignment(), CMultiAligner::x_BuildFullTree(), CWriteDB_ColumnIndex::x_BuildHeaderStrings(), CWriteDB_ColumnIndex::x_BuildMetaData(), CGuideTreeCalc::x_CalcDivergenceMatrix(), CNCMMSlab::x_CalcEmptyGrade(), CNCMMBlocksSet::x_CalcEmptyGrade(), CRnaCdsGroup::x_CalcIntervals(), CScoringJob::x_CalculateAlignmentScores(), CColumnScoringMethod::x_CalculateConsensusScores(), CCachedSeqDataForRemote::x_CalculateNumberOfSlices(), CRuler::x_CalculatePosLabelsStep(), CMouseZoomHandler::x_CaptureMouse(), CSeq_loc::x_ChangeToPackedInt(), CSeq_loc::x_ChangeToPackedPnt(), CCleanup_imp::x_ChangeTransposonToMobileElement(), CTSE_ScopeInfo::x_CheckAdded(), CSnpFilterUI::x_CheckChanges(), CQueue::x_CheckExecutionTimeout(), CGridCgiApplication::x_CheckJobStatus(), CBDB_Volumes::x_CheckStatusChange(), CSeqDBVol::x_CheckVersions(), CWriteDB_Impl::x_ClearHaveSequence(), CFeatureTypesBrowser::x_Clicked(), CTextSelHandler::x_ClipPosByRange(), CFrameworkDemoGUI::x_CloseAllViews(), CSQLITE_Blob::x_CloseBlob(), CWindowManager::x_CloseClient(), CFastaReader::x_CloseGap(), CFastaReader::x_CloseMask(), CBlastSeqVectorFromCSeq_data::x_ComplementData(), CQuerySplitter::x_ComputeChunkRanges(), CMultiAligner::x_ComputeClusterTrees(), CQuerySplitter::x_ComputeContextOffsets_NonTranslatedQueries(), CQuerySplitter::x_ComputeContextOffsets_TranslatedQueries(), CSeqDBOIDList::x_ComputeFilters(), CQuerySplitter::x_ComputeQueryContextsForChunks(), CGuideTreeCalc::x_ComputeTree(), CRPCClient< TRequest, TReply >::x_Connect(), CMaskWriterBlastDbMaskInfo::x_ConsolidateListOfMasks(), CQueryDataPerChunk::x_ContextInChunkToQueryIndex(), CSeq_align_Mapper::x_ConvertAlignCvt(), CBlastDbBlob::x_Copy(), CPromote::x_CopyCdregionToRNA(), CPsiBlastInputData::x_CopyQueryToMsa(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), CBDB_RawFile::x_Create(), CDockContainer::x_CreateContainerWindow(), CProjectView::x_CreateContextMenuBackbone(), CGlWidgetBase::x_CreateControls(), CCrossAlnWidget::x_CreateControls(), CBDB_RawFile::x_CreateDB(), CExtensionRegistry::x_CreateExtensionPoint(), CwxNCBIApp::x_CreateGUI(), CNetBLAST_DMSearchTool::x_CreateJob(), CDiagSyntaxParser::x_CreateMatcher(), CBlastpAppArgs::x_CreateOptionsHandle(), CBlastnAppArgs::x_CreateOptionsHandle(), CMergeAlignmentsJob::x_CreateProjectItems(), CDataLoadingAppJob::x_CreateProjectItems(), CPssmEngine::x_CreatePssmFromFreqRatios(), CPssmEngine::x_CreatePssmFromMsa(), CNetBlastJobDescriptor::x_CreateRemoteBlastIfNeeded(), CAlnMultiModel::x_CreateRow(), CAlnMultiWidget::x_CreateScoringMethodsMenu(), CPhrap_Contig::x_CreateSeq_align(), CBlastFormat::x_CreateSubjectBioseq(), CBDB_RawFile::x_DB_CPut(), CBDB_RawFile::x_DB_Fetch(), CBDB_RawFile::x_DB_Put(), CNCMMSizePool::x_DeallocateBlock(), CSelectionControl::x_DebugValid(), CAppExplorerService::x_DecorateProjectItem(), CNCBlobStorage::x_DeleteBlobFromCache(), CScoreCache::x_DeleteJob(), CSparseMultiDataSource::x_DeleteJob(), CAlnVecMultiDataSource::x_DeleteJob(), CSGAlignmentDS::x_DeleteScoringJob(), CCgiEntryReaderContext::x_DelimitedRead(), CSplitter::x_Deprecated(), CDockManager::x_DestroyFrameAndContainer(), CDockContainer::x_DestroyNode(), CBioseq_Base_Info::x_DetachAnnot(), CTSE_ScopeInfo::x_DetachDS(), CBioseq_set_Info::x_DetachEntry(), CScope_Impl::x_DetachFromOM(), CProjectViewBase::x_DetachFromProject(), CTSE_Info_Object::x_DetachObject(), CProjectPrx::x_DetachProjectItems(), CScopeInfo_Base::x_DetachTSE(), CGBDocument::x_DetachView(), CPhrapReader::x_DetectFormatVersion(), CTSE_Chunk_Info::x_DisableAnnotIndexWhenLoaded(), CId2Reader::x_DisconnectAtSlot(), CId1Reader::x_DisconnectAtSlot(), CGlWidgetPane::x_DispatchEventToHandler(), CDisplaySeqalign::x_DisplayAlnvec(), CNCMMCentral::x_DoCallMmap(), CProjectTask::x_DoChooseNewWorkspaceName(), CProjectTask::x_DoCloseWorkspace(), CProjectTask::x_DoEnsureProjectSaved(), CSplitter::x_DoResize(), CSeq_entry_Info::x_DoUpdate(), CBioseq_set_Info::x_DoUpdate(), CBioseq_Base_Info::x_DoUpdate(), CAlnMultiModel::x_DoUpdateRowsOrder(), CSeqMap::x_DoUpdateSeq_inst(), CFeatGlyph::x_Draw(), CClonePlacementGlyph::x_Draw(), CTSE_Lock::x_Drop(), CDataSource::x_DropTSE(), CTSE_Split_Info::x_DSAttach(), CTSE_Info_Object::x_DSAttach(), CTSE_Info::x_DSAttachContents(), CTSE_Info_Object::x_DSDetach(), CTSE_Info::x_DSDetachContents(), CNCBlobLockHolder::x_EnsureBlobInfoRead(), CNcbiTestTreeElement::x_EnsureChildOrder(), CCache< TKey, TValue, THandler, TLock, TSize >::x_EraseElement(), CSelListModelImpl< Item >::x_EraseItem(), CCache< TKey, TValue, THandler, TLock, TSize >::x_EraseLast(), CAppTaskService::x_ExecuteNextTaskInQueue(), CSchedulerEngine::x_ExecuteReadyTasks_OnThread(), CPsiBlastInputClustalW::x_ExtractAlignmentData(), CQuerySplitter::x_ExtractCScopesAndMasks(), CTar::x_ExtractEntry(), CBlastFormatterApp::x_ExtractQueries(), CPsiBlastInputData::x_ExtractQueryForPssm(), CPsiBlastInputClustalW::x_ExtractQueryForPssm(), CPsiBlastInputClustalW::x_ExtractQueryFromMsa(), CRemoteBlast::x_ExtractQueryIds(), CCleanup_imp::x_ExtractSuffixFromInitials(), CBlastFastaInputSource::x_FastaToSeqLoc(), CBDB_RawFile::x_FetchBufferDecompress(), CRemoteBlastDbAdapter::x_FetchData(), CProjectLoadOptionPanel::x_FileMRUList(), CPushback_Streambuf::x_FillBuffer(), CSeqVector_CI::x_FillCache(), CObjectListWidgetSel::x_FillObjects(), CProjectSelectorPanel::x_FillProjectsList(), x_FillResidueFrequencies(), CDiagContext::x_FinalizeSetupDiag(), CSeq_annot_Finder::x_Find(), CScope_Impl::x_FindBioseq_Info(), CScope_Impl::x_FindBioseqInfo(), CAlnMap::x_FindClosestSeqPos(), CBlastServices::x_FindDbInfoFromAvailableDatabases(), CBioseq_Base_Info::x_FindDesc(), CNCMMReserve::x_FindFreeChain(), CSeqDBIsam::x_FindIndexBounds(), CWriteDB_Volume::x_FindNuclLength(), CMultiAligner::x_FindPatternHits(), CSeqDBAtlas::x_FindRegion(), CAppJobTask::x_Finish(), CCleanup_imp::x_FixEtAl(), CCleanup_imp::x_FixSuffix(), CTar::x_Flush(), CWriteDB_IndexFile::x_Flush(), CCgiEntryReaderContext::x_FlushCurrentEntry(), CWriteDB_IsamIndex::x_FlushNumericIndex(), CWriteDB_IsamIndex::x_FlushStringIndex(), CCgiEntry::x_ForceComplete(), CSGGenBankDS::x_ForegroundJob(), CScopeInfo_Base::x_ForgetTSE(), CSourceFeatureItem::x_FormatGBNoteQuals(), CDockContainer::x_FromUserObject(), CDockContainer::x_Full_AddGrandChildrenAsSiblingsInContainer(), CDockContainer::x_Full_AddGrandChildrenToContainer(), CDockContainer::x_Full_CleanLayoutTreeBranch(), CDockContainer::x_Full_ReduceContainer(), CDockContainer::x_Full_ReduceHiddenContainer_IfNeeded(), CDockContainer::x_Full_RemoveNode(), CDockContainer::x_Full_UnhideContainer_AddChildren(), CFlatGatherer::x_GatherCDSReferences(), CReferenceItem::x_GatherInfo(), CHistComment::x_GatherInfo(), CHitMatrixDataSource::x_GetAlignedSeqIds(), CAnnotObject_Info::x_GetAlignIter(), CSeqDBIdxFile::x_GetAmb(), CAnnotTypes_CI::x_GetAnnotSet(), CAppExplorerCmdHandler::x_GetAppExplorerService(), CProjectCmdHandler::x_GetAppTaskService(), CAppExplorerCmdHandler::x_GetAppTaskService(), CSplitter::x_GetBottom(), CSplitter::x_GetCellIndex(), CAlnMap::x_GetChunks(), CSeqMap::x_GetChunkToLoad(), CDockContainer::x_GetClientsInNode(), CSplitter::x_GetColumn(), CId2Reader::x_GetConnection(), CAlnMultiWidget::x_GetCurrentMethodName(), CNetBLAST_DMSearchTool::x_GetDataSource(), CBDB_Env::x_GetDeadLockDetect(), CAlnMultiWidget::x_GetDefMethodName(), CDockContainer::x_GetDockPanel(), CProjectTreePanel::x_GetExplorerItem(), CAnnotObject_Info::x_GetFeatIter(), CSeqDBColumn::x_GetFileRange(), CAnnotObject_Info::x_GetGraphIter(), CSplitter::x_GetHeight(), CAlnVecRow::x_GetIconsTooltip(), x_GetLabel_Type(), CAxisRenderer::x_GetLabelValue(), CSplitter::x_GetLeft(), CAlnMap::x_GetLen(), SSeqMapSelector::x_GetLimitTSE(), CAsn2FlatApp::x_GetLocation(), CAsn2FastaApp::x_GetLocation(), CAnnotObject_Info::x_GetLocsIter(), CSeqDBImpl::x_GetMaskDataColumn(), CFastaOstream::x_GetMaskingStates(), SDiagMessage::x_GetModule(), CBioseq_Base_Info::x_GetNextDesc(), CGuideTree::x_GetNodeFeature(), CSeqDBImpl::x_GetNumOIDs(), CSeqDBImpl::x_GetNumSeqs(), CSeqDBImpl::x_GetNumSeqsStats(), CBDB_BlobDictStore< Key, Dictionary, Store >::x_GetOpenDict(), CBDB_BlobDictStore< Key, Dictionary, Store >::x_GetOpenStore(), CProjectViewBase::x_GetOrigObject(), CSeqVector::x_GetPacked2naSeqData(), CSeqVector::x_GetPacked4naSeqData(), CSeqVector::x_GetPacked8SeqData(), CWig2tableApplication::x_GetParamName(), CWig2tableApplication::x_GetParamValue(), CProjectCmdHandler::x_GetProjectService(), CCompareSeqRegions::x_GetPutativeMatches(), CBlastDBCmdApp::x_GetQueries(), SIdAnnotObjs::x_GetRangeMap(), CAlnMap::x_GetRawSegType(), CWinMaskCountsGenerator::x_GetReader(), x_GetReader(), SegMaskerApplication::x_GetReader(), CGBDataLoader::x_GetReaderManager(), CAlnMultiModel::x_GetRecordByRow(), CGBDataLoader::x_GetRecords(), CSeqDBAtlas::x_GetRegion(), CSplitter::x_GetRight(), CSplitter::x_GetRow(), CAlnMultiModel::x_GetRowByLine(), CAlnMultiRenderer::x_GetRowTooltip(), CSeqMap::x_GetSegment(), CSeq_align_Handle::x_GetSeq_align(), CSeq_graph_Handle::x_GetSeq_graph(), CDataSource::x_GetSeqMatch(), CSeqDBVol::x_GetSequence(), CSparseAln::x_GetSeqVector(), CThreadPoolEngine::x_GetStateByStatus(), CPsiBlastInputData::x_GetSubjectSequence(), x_GetSwitchPoint(), CSplitter::x_GetTop(), CSeq_id_Mapper::x_GetTree(), CAnnot_Collector::x_GetTSE_Info(), CScope_Impl::x_GetTSE_Lock(), CScopeInfo_Base::x_GetTSE_ScopeInfo(), CViewManagerService::x_GetViewRegistryPath(), CSplitter::x_GetWidth(), CGBDataLoader::x_GetWriterManager(), CSyncQueue< Type, Container >::x_GuardedUnlock(), CPssmEngine::x_GuardProteinQuery(), CWindowManager::x_HandlePanelCommand(), CBioseqContext::x_HasParts(), CTextSelHandler::x_HitTest(), CLinearSelHandler::x_HitTest(), CAlnMultiHeaderHandler::x_HitTest(), CAlignMarkHandler::x_HitTest(), CAlnStats< _TAlnIdVec >::x_IdentifyPotentialAnchors(), CFeatureItem::x_ImportQuals(), CTSE_Info::x_IndexBioseq(), CTSE_Info::x_IndexBioseq_set(), CTar::x_Init(), CSeq_id::x_Init(), CAlnSpanVertModel::x_Init(), CBioseqContext::x_Init(), CCgiRequest::x_Init(), CSearchResultSet::x_Init(), CNCBIwxApplication::x_Init_wxApplication(), CSeq_loc_Mapper_Base::x_InitAlign(), CSeq_annot_Info::x_InitAlignKeys(), CSeq_annot_Info::x_InitAlignList(), CSeq_annot_Info::x_InitAnnotList(), CScope_Impl::x_InitBioseq_Info(), CBlastScopeSource::x_InitBlastDatabaseDataLoader(), CShowBlastDefline::x_InitDefline(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatList(), CSeq_annot_Info::x_InitFeatTable(), CGeneModelTrack::x_InitFeature_Recursive(), CSeq_annot_Info::x_InitGraphKeys(), CSeq_annot_Info::x_InitGraphList(), CSeq_annot_CI::x_Initialize(), CAnnot_Collector::x_Initialize(), CAnnot_CI::x_Initialize(), CSeq_loc_Mapper_Base::x_InitializeFeat(), CPssmEngine::x_InitializeScoreBlock(), CSeq_loc_Mapper::x_InitializeSeqMap(), CAnnotType_Index::x_InitIndexTables(), CSparse_CI::x_InitIterator(), CSparseIterator::x_InitIterator(), CNCBlobLockHolder::x_InitLock(), CSeq_annot_Info::x_InitLocsKeys(), CSeq_annot_Info::x_InitLocsList(), CWorkbench::x_InitMainFrame(), CSeqIdAlignBitmap< TSeqAlignSeqIdVec >::x_InitNucProtBitmaps(), CMultiAligner::x_InitParams(), CSparse_CI::x_InitSegment(), CLocalDbAdapter::x_InitSeqDB(), CSeq_loc_Mapper_Base::x_InitSparse(), CGuideTreeCalc::x_InitTreeFeatures(), CDotMatrixView::x_InitWidget(), CAlignSpanView::x_InitWidget(), CSelectionControl::x_InsertItems(), CTSE_ScopeInfo_Base::x_InternalUnlockTSE(), CBioseqContext::x_IsDeltaLitOnly(), CBioseq_Base_Info::x_IsEndNextDesc(), CNCMessageHandler::x_IsFlagSet(), CBioseqContext::x_IsPart(), CSeqDBOIDList::x_IsSet(), CBlastTracebackSearch::x_IsSuitableForPartialFetching(), CSeq_loc_Mapper_Base::x_IterateExonParts(), CProjectTask::x_LaunchProjectLoadingTask(), CProjectCmdHandler::x_LaunchTask(), CAlnMultiRenderer::x_Layout(), CAlignmentTrack::x_LoadAlignedSeqFeats(), CTSE_Chunk_Info::x_LoadAnnot(), CTSE_Chunk_Info::x_LoadAssembly(), CTSE_Chunk_Info::x_LoadBioseq(), CBlastDbDataLoader::x_LoadData(), CProjectPrx::x_LoadData(), CSplitDataLoader::x_LoadData(), CTSE_Chunk_Info::x_LoadDescr(), CSnpFilterUI::x_LoadFilter(), CSeqMap::x_LoadObject(), CSeqDBIsam::x_LoadPage(), CTSE_Chunk_Info::x_LoadSeq_entry(), CTSE_Chunk_Info::x_LoadSequence(), CTSE_Lock::x_Lock(), CTSE_ScopeInfo_Base::x_LockTSE(), CDataSource::x_LockTSE(), CAutodefJob::x_MakeChanges(), CMultiAligner::x_MakeClusterResidueFrequencies(), CMultiAligner::x_MakeFillerBlocks(), CFeatureSearchJob::x_Match(), CAnnot_Collector::x_MatchLimitObject(), CRWLock::x_MayAcquireForReading(), x_MergeNoSort(), CMergeVolumes::x_MergeVolume(), CTextSelHandler::x_MouseInRightMargin(), CTextSelHandler::x_MouseToSeqPos(), CLinearSelHandler::x_MouseToSeqPos(), CAlignMarkHandler::x_MouseToSeqPos(), CNCBlobStorage::x_MoveBlobInCache(), CAlnMultiHeaderHandler::x_MoveColumn(), CAlnMultiHeaderHandler::x_MoveColumnSeparator(), CDockManager::x_MoveToFloatingFrame(), CLayoutTrackHandler::x_MoveTrackDownRecursive(), CLayoutTrackHandler::x_MoveTrackUpRecursive(), CSeq_descr_CI::x_Next(), CSeqVector_CI::x_NextCacheSeg(), CSeqdesc_CI::x_NextDesc(), CBlastSearchTask::x_NextSubTask(), CAlnMultiHeaderHandler::x_NextVisibleColumn(), CNetBlastJobDescriptor::x_NotifyDataSource(), CObservable::x_NotifyObservers(), CObservable::x_NotifyObserversNow(), CNCMMReserve::x_OccupyChain(), CMultiFileInput::x_OnAddFilenames(), CTableSortMultiChoice::x_OnAddLevels(), CAnnotCompareDS::x_OnAppJobNotification(), CSnpFilterUI::x_OnBtnSave(), CFeatureTypesBrowser::x_OnClicked(), CMinimapHandler::x_OnEndMinimap(), CMouseZoomHandler::x_OnEndScale(), CLayoutTrack::x_OnIconClicked(), CFeatTableDS::x_OnJobNotification(), CAppJobDispatcher::x_OnJobStarted(), CAppJobDispatcher::x_OnJobStateChanged(), CFeatureTrack::x_OnLayoutPolicyChanged(), CAlignmentTrack::x_OnLayoutPolicyChanged(), CAppExplorerService::x_OnProjectFolderProperties(), CAppExplorerService::x_OnProjectItemProperties(), CAppExplorerService::x_OnProjectProperties(), CAlnMultiPane::x_OnRowMouseEvent(), CLinearSelHandler::x_OnSelectCursor(), CwxChooseSeqDlg::x_OnSelectionChanged(), CMultiAlignView::x_OnSetSelection(), CDotMatrixView::x_OnSetSelection(), CProjectView::x_OnShowPopupMenu(), CSchedulerEngine::x_OnSignal_OnThread(), CAppTaskService::x_OnTaskCanceled(), CGroupMapWidget::x_OnToggleGroup(), CObservable::x_OnUpdateEvent(), CAppTaskService::x_OnWakeUpSignal(), CProjectView::x_OnWidgetRangeChanged(), CProjectView::x_OnWidgetSelChanged(), CProjectService::x_OnWorkspaceChanged(), CAppExplorerService::x_OnWorkspaceFolderProperties(), CTar::x_Open(), CBDB_RawFile::x_Open(), CGlPane::x_Open_SetViewport(), CSQLITE_Blob::x_OpenBlob(), CUIDataSourceService::x_OpenDataSources(), CFastaReader::x_OpenMask(), CCleanup_imp::x_OrgModToSubtype(), CSeqConvert_imp::x_Pack(), CTar::x_PackName(), CAmbigDataBuilder::x_PackNewAmbig(), CAmbigDataBuilder::x_PackOldAmbig(), CBioseq_set_Info::x_ParentAttach(), CBioseq_Info::x_ParentAttach(), CGFFReader::x_ParseV2Attributes(), CAppExplorerService::x_Paste(), CSeqDBMapStrategy::x_Pick(), CBDB_Cache::x_PidLock(), CCrossAlignView::x_PostAttachToProject(), CObservable::x_PostUpdateEvent(), CArgDescriptions::x_PreCheck(), CBLASTSeqToolJob::x_PrepareProjectItem(), CNetBlastLoadingJob::x_PrepareProjectItem(), CNCBlobStorage::x_PrepFilePoolsToDelete(), CSeqVector_CI::x_PrevCacheSeg(), CBlastDBCmdApp::x_PrintBlastDatabaseInformation(), CBlastTabularInfo::x_PrintField(), CId2FetchApp::x_ProcessData(), CPsiBlastInputData::x_ProcessDenseg(), CTextDataSource::x_ProcessResult(), CBlastDBCmdApp::x_ProcessSearchRequest(), CBlastDBCmdApp::x_ProcessSingleQuery(), CPromote::x_PromoteCdregion(), CPromote::x_PromoteRna(), CPssmEngine::x_PSIMatrix2Asn1(), CWriteDB_Impl::x_Publish(), CSeqMap_CI::x_Push(), CStreamUtils::x_Pushback(), CSeq_loc_Mapper_Base::x_PushLocToDstMix(), CBDB_LobFile::x_Put(), CDiagSyntaxParser::x_PutIntoFilter(), CBlastFormatterApp::x_QueryBioseqToSSeqLoc(), CAmbigDataBuilder::x_Random(), SIdAnnotObjs::x_RangeMapIsEmpty(), CTar::x_ReadArchive(), CPsiBlastInputClustalW::x_ReadAsciiMsa(), CBufferedLineReader::x_ReadBuffer(), CWigBufferedLineReader::x_ReadBuffer(), CBDB_ExtBlobStore< TBV >::x_ReadCache(), CTar::x_ReadEntryInfo(), CBlastDbBlob::x_ReadIntFixed(), CSeqDBColumn::x_ReadMetaData(), CBlastDbBlob::x_ReadRaw(), CPhrapReader::x_ReadRead(), CFastaReader::x_ReadSegSet(), CFastaReader::x_ReadSeqsToAlign(), CTransmissionReader::x_ReadStart(), CSeqDBAliasNode::x_ReadValues(), CMultiAligner::x_RealignBlocks(), CSeq_graph_Handle::x_RealRemove(), CSeq_feat_EditHandle::x_RealRemove(), CSeq_align_Handle::x_RealRemove(), CSeq_graph_Handle::x_RealReplace(), CSeq_feat_EditHandle::x_RealReplace(), CSeq_align_Handle::x_RealReplace(), CMultiAlignView::x_RebuildObjectIndex(), CSeqMap_CI::x_RefTSEMatch(), CWindowManager::x_RegisterClient(), CGlWidgetPane::x_RegisterHandler(), CObjectManager::x_RegisterLoader(), CAllOtherFeaturesTrack::x_ReinitFeatureTrack(), CReader::x_ReleaseConnection(), CDataSource::x_ReleaseLastTSELock(), CMouseZoomHandler::x_ReleaseMouse(), CMetaRegistry::x_Reload(), CTSE_Lock::x_Relock(), CReader::x_RemoveConnection(), CScope_Impl::x_RemoveFromHistory(), CNCMMDBPage::x_RemoveFromLRUImpl(), CAppJobDispatcher::x_RemoveJobRecord(), CAppExplorerService::x_RemoveProjectItem(), CAppExplorerService::x_RemoveWorkspaceFolder(), CAlnVecRow::x_RenderAlign(), CTraceGraph::x_RenderConfGraph(), CTraceGraph::x_RenderCurveSegment(), CAlnVecRow::x_RenderDescr(), CHitMatrixGraph::x_RenderEventHandler(), CFeaturePanel::x_RenderHairLineSelections(), CAlnVecRow::x_RenderIconExpand(), CAlnVecRow::x_RenderIcons(), CAlnVecRow::x_RenderIconStrand(), CTraceGraph::x_RenderIntensityGraphs(), CAlnMultiHeaderHandler::x_RenderMoveMode(), CTextSelHandler::x_RenderOpSymbol(), CTextSelHandler::x_RenderRange(), CRuler::x_RenderRange(), CAlnMultiRenderer::x_RenderRow(), CRuler::x_RenderScale(), IPhyloTreeRenderer::x_RenderSelection(), CSequenceTextGraph::x_RenderSequence(), CAlnVecRow::x_RenderSequence(), CAlnVecRow::x_RenderTextCell(), CXmlValueItem::x_RenderXml(), CAppJobTask::x_ReportError(), CSeqdesc_CI::x_RequestedType(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CDataSource::x_ResetDirtyAnnotIndex(), CFileDiagHandler::x_ResetHandler(), CScopeInfo_Base::x_ResetLock(), CTSE_ScopeInfo::x_ResetTSE_Lock(), CSeqVector_CI::x_ResizeCache(), CSplitter::x_ResizeToCell(), CScope_Impl::x_ResolveSeq_id(), CTSE_ScopeInfo::x_RestoreAdded(), CObjectManager::x_RevokeDataLoader(), CRegionMap::x_Roundup(), CNetBlastSubmittingJob::x_Run(), CAppTask::x_Run(), CProjectTask::x_Run(), CProjectLoadingTask::x_RunCurrentSubTask(), CDBAPI_CacheIWriter::x_SaveBlob(), CTSE_ScopeInfo::x_SaveRemoved(), CSeqDBImpl::x_ScanTotals(), CAnnot_Collector::x_SearchAll(), CSeqDBIsam::x_SearchDataNumeric(), CSeqDBIsam::x_SearchDataNumericMulti(), CRemoteBlast::x_SearchErrors(), CSeqDBIsam::x_SearchIndexNumeric(), CAnnot_Collector::x_SearchLoc(), CSeqDBIsam::x_SearchNegativeMulti(), CAnnot_Collector::x_SearchSegments(), CAutodefToolManager::x_SelectCompatibleInputObjects(), CTreeBuilderTool::x_SelectCompatibleInputObjects(), CMergeAlignmentsToolManager::x_SelectCompatibleInputObjects(), CGroupAlignmentsToolManager::x_SelectCompatibleInputObjects(), CCreateNeedlemanWunschToolManager::x_SelectCompatibleInputObjects(), CCreateGeneModelToolManager::x_SelectCompatibleInputObjects(), CCleanupAlignmentsToolManager::x_SelectCompatibleInputObjects(), CBLASTToolManagerBase::x_SelectCompatibleInputObjects(), CScope_Impl::x_SelectSeq(), CScope_Impl::x_SelectSet(), CBioseq_Base_Info::x_SetAnnot(), CTSE_Info::x_SetBioseqId(), CTSE_Info::x_SetBioseqIds(), CDockPanel::x_SetClient(), CTSE_Split_Info::x_SetContainedId(), CDataSource::x_SetDirtyAnnotIndex(), CSeqDBExtFile::x_SetFileType(), CSeq_annot_SNP_Info::x_SetGi(), CWriteDB_Impl::x_SetHaveSequence(), CCgiArgs_Parser::x_SetIndexString(), CDataSource::x_SetLoadLock(), CScopeInfo_Base::x_SetLock(), CDataSource::x_SetLock(), CBioseqContext::x_SetMapper(), CRemoteBlast::x_SetMaskingLocationsForQueries(), CDataSource_ScopeInfo::x_SetMatch(), CCompoundRegistry::x_SetModifiedFlag(), CFeatTree::x_SetNoParent(), CSeq_entry_Info::x_SetObject(), CSeq_annot_Info::x_SetObject(), CBioseq_set_Info::x_SetObject(), CBioseq_Info::x_SetObject(), CRemoteBlast::x_SetOneParam(), CFeatTree::x_SetParent(), CSeqVector_CI::x_SetPos(), CBDB_FileDumper::x_SetQuoteFlags(), CAlnMap::x_SetRawSegTypes(), CId2ReaderBase::x_SetResolve(), CAlnMultiWidget::x_SetScoringMethod(), CSeqMap::x_SetSegment(), CPromote::x_SetSeqFeatProduct(), CSeq_annot_Info::x_SetSNP_annot_Info(), CBlastSeqVectorOM::x_SetStrand(), CBlastTracebackSearch::x_SetSubjectRangesForPartialFetching(), CSeq_annot_CI::x_Settle(), CTSE_ScopeInfo::x_SetTSE_Lock(), CODBC_Connection::x_SetupErrorReporter(), CNcbiApplication::x_SetupStdio(), CFrameworkDemoGUI::x_ShowSingletonView(), CWindowManagerService::x_ShowToolBar(), CSelectionEvent::x_SimpleMatch(), CTar::x_Skip(), CAnnot_Collector::x_Sort(), CSplitter::x_Split(), CSplitDataLoader::x_SplitAligns(), CTSE_Chunk_Info::x_SplitAttach(), CSplitDataLoader::x_SplitFeats(), CSplitDataLoader::x_SplitGraphs(), CBlastFormat::x_SplitSeqAlign(), CAppJobDispatcher::x_StartJob(), CLayoutTrackHandler::x_StartMoving(), CNetBlastMonitoringJob::x_StartRetrivingTask(), CLayoutTrackHandler::x_StopMoving(), CBDB_Cache::x_Store(), CMergeVolumes::x_StoreMerger(), x_SubNoSort(), CCleanup_imp::x_SubtypeCleanup(), CSeqDBIdSet::x_SummarizeBooleanOp(), CMouseZoomHandler::x_SwitchToActiveState(), CAlnMultiHeaderHandler::x_SwitchToMoveMode(), CMouseZoomHandler::x_SwitchToReadyState(), CMinimapHandler::x_SwitchToReadyState(), CAlnMultiHeaderHandler::x_SwitchToResizeMode(), CMinimapHandler::x_SwithToActiveState(), x_TestForOverlap_MultiStrand(), CScoreCache::x_TransferResults(), CGuideTreeCalc::x_TrimMatrix(), CWig2tableApplication::x_TryGetDouble(), CTSE_Info_Object::x_TSEAttach(), CTSE_Chunk_Info::x_TSEAttach(), CTSE_Info_Object::x_TSEAttachContents(), CBioseq_set_Info::x_TSEAttachContents(), CTSE_Info_Object::x_TSEDetach(), CPhrapReader::x_UngetTag(), CDockContainer::x_UnhideFullContainer(), CSeq_id_PDB_Tree::x_Unindex(), CSeq_id_Patent_Tree::x_Unindex(), CSeq_id_Giim_Tree::x_Unindex(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_int_Tree::x_Unindex(), CNCMMReserve::x_Unlink(), CProjectPrx::x_UnloadData(), CTSE_Lock::x_Unlock(), CNCBlobStorage::x_UnlockInstanceGuard(), CTSE_Info::x_UnmapAnnotObject(), CTSE_Info_Object::x_Update(), CBDB_Cache::x_UpdateAccessTime(), CTSE_Info::x_UpdateAnnotIndexContents(), CSegmentGlyph::x_UpdateBoundingBox(), CRnaCdsGroup::x_UpdateBoundingBox(), CFeatGlyph::x_UpdateBoundingBox(), CCommentGlyph::x_UpdateBoundingBox(), CClonePlacementGlyph::x_UpdateBoundingBox(), CScoringJob::x_UpdateBuffer(), CSeqVector_CI::x_UpdateCacheDown(), CSeqVector_CI::x_UpdateCacheUp(), CProjectViewBase::x_UpdateContentLabel(), CAppExplorerService::x_UpdateDataSourceTree(), CQueue::x_UpdateDB_GetJobNoLock(), CCache< TKey, TValue, THandler, TLock, TSize >::x_UpdateElement(), CSequenceSearchForm::x_UpdateFileList(), COrfSearchForm::x_UpdateKozak(), CRuler::x_UpdateMappingByPane(), CStatusBarService::x_UpdateMessageField(), CSeq_annot_Info::x_UpdateObjectKeys(), CAppExplorerService::x_UpdateProject(), CAppExplorerService::x_UpdateProjectItem(), CHitMatrixDataSource::x_UpdateScoreMap(), CWindowsDlg::x_UpdateTable(), CTSE_ScopeInfo_Base::x_UserUnlockTSE(), CWorkspaceConstPrx::x_ValidateCall(), CProjectConstPrx::x_ValidateCall(), CBlastInputReader::x_ValidateMoleculeType(), CPsiBlastInputClustalW::x_ValidateQueryInMsa(), CSeqdesc_CI::x_ValidDesc(), CMergedPairwiseAln::x_ValidNeighboursOnSecondDim(), CAppJobDispatcher::x_VerifyProgressNotNull(), CDockContainer::x_Visible_AddChildToContainer(), CDockContainer::x_Visible_RemoveNode(), CDockContainer::x_Visible_ReplaceChildWithContainer(), CDockContainer::x_Visible_ReplaceContainerWithChild(), CBlastFormat::x_WrapAlignmentInSeqAnnot(), CTar::x_WriteArchive(), CTar::x_WriteEntryInfo(), CBlastDbBlob::x_WriteIntFixed(), CBlastDbBlob::x_WriteIntFixed_LE(), CBDB_CacheIWriter::x_WriteOverflow(), CBlastDbBlob::x_WriteRaw(), CFastaOstream::x_WriteSequence(), CStringOrBlobStorageWriter::x_WriteToStream(), CBlastDbBlob::x_WriteVarInt(), CResultSet::xGetBlobOStream(), CRWStreambuf::xsgetn(), CConn_Streambuf::xsgetn(), CTime::YearDayNumber(), CGlPane::ZoomPoint(), CBDB_RawFile::~CBDB_RawFile(), CBioseq_ScopeInfo::~CBioseq_ScopeInfo(), python::CConnection::~CConnection(), CCounter::~CCounter(), CDataSource_ScopeInfo::~CDataSource_ScopeInfo(), CDemoHandler_EmptyOnOverflow::~CDemoHandler_EmptyOnOverflow(), CDemoHandler_MemSize::~CDemoHandler_MemSize(), CEffectiveSearchSpacesMemento::~CEffectiveSearchSpacesMemento(), CFastaReader::~CFastaReader(), CHookDataBase::~CHookDataBase(), CInitMutex_Base::~CInitMutex_Base(), CMemStore::~CMemStore(), CNCMMBlocksSet::~CNCMMBlocksSet(), CNCMMDBCache::~CNCMMDBCache(), CNCMMSizePool::~CNCMMSizePool(), CNetBLASTUIDataSource::~CNetBLASTUIDataSource(), CObject::~CObject(), CObjectHookGuardBase::~CObjectHookGuardBase(), CObjectPool< C >::~CObjectPool(), CProjectView::~CProjectView(), CReaderAllocatedConnection::~CReaderAllocatedConnection(), CReaderRequestResult::~CReaderRequestResult(), CScopeInfo_Base::~CScopeInfo_Base(), CSemaphore::~CSemaphore(), CSeq_id_Gi_Tree::~CSeq_id_Gi_Tree(), CSeq_id_Info::~CSeq_id_Info(), CSeq_id_Mapper::~CSeq_id_Mapper(), CSeq_loc_Conversion::~CSeq_loc_Conversion(), CSeqDBMemLease::~CSeqDBMemLease(), CSeqMap::~CSeqMap(), CTempPusher< TStack >::~CTempPusher(), CTreeNode< TValue, TKeyGetter >::~CTreeNode(), CTSE_Info::~CTSE_Info(), CTSE_ScopeInfo::~CTSE_ScopeInfo(), and CTypeInfoSource::~CTypeInfoSource(). |
1.4.6
Modified on Mon Dec 07 16:21:19 2009 by modify_doxy.py rev. 173732