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Definition at line 57 of file seq_map_switch.cpp.
Referenced by hashtable< _Val, _Key, _HF, _ExK, _EqK, _All >::_M_next_size(), _PSICheckSequenceWeights(), _PSIComputeSequenceWeights(), _PSISpreadGapWeights(), CSeq_locFormatter::Add(), CCgiCookies::Add(), BlockIntersector::addOneAlignment(), AddPeriod(), SAccGuide::AddRule(), CSystemPath::AddToPath(), CDB_Stream::Assign(), CBlobSplitterImpl::AttachToSkeleton(), CShutdownProcessor::Authenticate(), CProSplignOutputOptionsExt::BackCheck(), tree< T, tree_node_allocator >::begin(), tree< T, tree_node_allocator >::begin_fixed(), impl::CDBBindedParams::Bind(), BOOST_AUTO_TEST_CASE(), CCgiEntryReaderContext::CCgiEntryReaderContext(), CDBUriConnParams::CDBUriConnParams(), CDiagStrPathMatcher::CDiagStrPathMatcher(), AbstractLexer::Char(), CTextUtil::CleanJournalTitle(), CleanStringList(), CChain::ClipToCompleteAlignment(), CMessageSlotPopupWindow::CMessageSlotPopupWindow(), CNamespace::CNamespace(), CLocMapper_Default::CollapseRanges(), CollectProteinFrequences(), XStr::CompareCase(), CCgiStatistics::Compose_Entries(), CId2Compressor::CompressChunk(), CDirEntry::ConcatPathEx(), ContainsSgml(), CPepXML::ConvertModifications(), CObjectOStream::CopyClassSequential(), oligofar::COutputFormatter::CoTranslate(), CwxSplittingArtProvider::CreateBitmap(), CSymbolGuard::CSymbolGuard(), CUnfocusedScrollbar::CUnfocusedScrollbar(), CWinMaskCountsGenerator::CWinMaskCountsGenerator(), CSubSource::DateFromCollectionDate(), ddAcumAliCord(), ddAlignInfo(), ddRecompose(), CDbapiSampleApp::DeleteLostTables(), CDirEntry::DeleteTrailingPathSeparator(), Denseg2DenseDiagList(), tree< T, tree_node_allocator >::depth(), CRemoteAppRequestSB_Impl::Deserialize(), CDistMethods::Divergence(), CSeqMaskerOstatOpt::doSetParam(), CSeqMaskerOstatBin::doSetParam(), CExpandItem::Draw(), CCompositeTextItem::Draw(), tree< T, tree_node_allocator >::end(), tree< T, tree_node_allocator >::end_fixed(), CRegexp::Escape(), CScannerFunctorEQ::Eval(), ExcludeBadExons(), CPatternStats::ExpandPattern(), CFormattingArgs::ExtractAlgorithmOptions(), ExtractReaderContents(), AbstractLexer::FillChar(), CWinMaskConfig::CIdSet_TextMatch::find(), array_set< T, Cmp >::find(), array_map< K, V, Cmp, kCapacityIncrement >::find(), CCgiEntry::find(), CCgiEntry::find_first_of(), find_match(), python::CStmtStr::find_named(), python::CStmtStr::find_numeric(), CSymDustMasker::triplets::find_perfect(), array_set< T, Cmp >::find_pos(), array_map< K, V, Cmp, kCapacityIncrement >::find_pos(), python::CStmtStr::find_TSQL(), FindAllCodonInstances(), CIStreamBuffer::FindChar(), FindFirstStart(), FindForwardOrfs(), NStr::FindNoCase(), FindPolyA(), CBDB_ExtBlobStore< TBV >::Flush(), CAgpErr::FormatMessage(), CProSplignOutputOptionsExt::ForwCheck(), CContElemConverter< CCgiEntry >::FromString(), impl::g_SubstituteParam(), oligofar::CFaDiceApp::GeneratePair(), oligofar::CFaDiceApp::GenerateRead(), bm::bvector_mini< A >::get_first(), get_next_tok(), GetAlignmentColumnsForCD(), StyleManager::GetAtomStyle(), CScope_Impl::GetBioseqHandles(), BMAUtils::GetCharacterAndIndexForColumn(), CBlockedAlignmentEditor::GetCharacterForColumn(), CProjectViewBase::GetClientLabel(), CAlnVec::GetColumnVector(), CFastaReader::GetCurrentPos(), GetDefaultLogLocation(), CCgiApplication::GetDefaultLogPath(), CSplitter::GetHeights(), CWinMaskSeqTitle::GetId(), CSeqportUtil_implementation::GetIndex(), GetIntergenicSpacerClauseList(), CQueryDataPerChunk::GetLastChunk(), AlignmentCollection::GetLowerBound(), CFastaBioseqSource::GetNext(), CSeqGlyph::GetPosInWorld(), CQueryDataPerChunk::GetQueryLength(), CSequenceGotoData::GetRange(), SNetCacheAPIImpl::GetReadStream(), CAlnVec::GetResidue(), GetScreenRect(), CSeqVector_CI::GetSeqData(), CBlockedAlignmentEditor::GetSeqIndexForColumn(), CAlnMap::GetSeqPosFromAlnPos(), CAlnMap::GetSeqPosFromSeqPos(), CDense_seg::GetSeqStart(), CDense_seg::GetSeqStop(), CAutoDefModifierCombo::GetSourceDescriptionString(), CSystemPath::GetStdPath(), IBlastSeqVector::GetStrandData(), CFastaIOWrapper::GetSubstring(), COrgRefCache::GetSubtypeFromName(), CSeqGraphicRenderer::GetTooltip(), CGwasGlyph::GetTooltip(), CBinsGlyph::GetTooltip(), CImageIO::GetTypeFromFileName(), CCodeGenerator::GetTypes(), AlignmentCollection::GetUpperBound(), CAlnVec::GetWholeAlnSeqString(), CSplitter::GetWidths(), CTextUtil::GetWordFrequencies(), TaxTreeData::growAndInsertLineage(), CDockPanel::HitTest(), CFastIScore::Init(), CNSeq::Init(), CSeqportUtil_implementation::InitFastIupacnaNcbi2na(), CSeqportUtil_implementation::InitFastIupacnaNcbi4na(), CDiscreteDistribution::InitFromParameter(), impl::CRowInfo_SP_SQL_Server::Initialize(), CSeqMap::InsertSegmentGap(), NStr::Int8ToString(), NStr::IntToString(), CRefArgs::IsListedHost(), IsLocalPath(), CBlockedAlignmentEditor::IsResidueAtIndexOnAllRows(), CValidError_imp::IsSerialNumberInComment(), IsSpName(), mu::ParserInt::IsVal(), CCountries::IsValid(), LaunchWebPage(), CGBProjectHandle::Load(), CId1FetchApp::LookUpFlatSeqID(), make_server(), MakeSeqLocFromDD(), CWiggleTrack::MakeTable(), CWig2tableApplication::MakeTable(), BlockModel::mask(), CDiagStrPathMatcher::Match(), CVariant::MoveTo(), NcbiGetline(), CAlignedFeatureGraph::NeedTooltip(), NultriposToProduct_pos(), tree< T, tree_node_allocator >::iterator_base::number_of_children(), tree< T, tree_node_allocator >::number_of_children(), tree< T, tree_node_allocator >::number_of_siblings(), CSeqGraphicWidget::OnContextMenu(), CLayoutTrackHandler::OnKeyEvent(), CSeqGraphicPane::OnLeftDblClick(), CCrossAlnPane::OnLeftDblClick(), CSeqMarkHandler::OnLeftDoubleClick(), CBookmarksHandler::OnLeftDoubleClick(), CSeqMarkHandler::OnLeftDown(), CCrossAlnPane::OnLeftDown(), CLayoutTrackHandler::OnLeftUp(), CSeqGraphicPane::OnMotion(), CLayoutTrackHandler::OnMotion(), CTooltipHandler::OnMotion(), CMouseZoomHandler::OnMotion(), CGlWidgetPane::OnMouseDown(), CAlnVecRow::OnMouseEvent(), CMouseZoomHandler::OnMouseWheel(), CLayoutTrackHandler::OnOtherMouseEvents(), CColorPanel::OnTextCtrlUpdated(), CLDS_CoreObjectsReader::OnTopObjectFoundPre(), CTextPosition::operator!=(), CTextPrinter::operator()(), ProjectCDS::operator()(), CTextPosition::operator<(), operator<<(), CTextPosition::operator==(), CTextPosition::operator>(), CTextPosition::operator>=(), CFastaReader::ParseDefLine(), SDiagMessage::ParseMessage(), CFastaReader::ParseRange(), CDBUriConnParams::ParseServer(), CDBUriConnParams::ParseSlash(), CIStreamBuffer::PeekFindChar(), CAutoDefFeatureClause_Base::PluralizeInterval(), CAlnVecPrinter::PopsetStyle(), oligofar::CQueryHash::PopulateDeletions(), oligofar::CQueryHash::PopulateInsertions(), CMzXML2hdf5Application::ProcessFiles(), CBDB_ResultStore< TBV >::CResultStoreEnumerator::ProcessNewFetch(), CGBenchIndexCgi::ProcessRequest(), CSimpleDictionary::Read(), Ctbl_seg::Read(), CBDB_ExtBlobStore< TBV >::ReadBlob(), CObjectIStream::ReadClassSequential(), CImageIO::ReadImageInfo(), CLDS_CoreObjectsReader::ReadObject(), BlockIntersector::removeOneAlignment(), CSeqMap::RemoveSegment(), RemoveSpaceBeforeAndAfterColon(), RemoveWhiteSpace(), CSeqMarkHandler::Render(), CBookmarksHandler::Render(), CAsnElementPrimitive::RenderValue(), tree< T, tree_node_allocator >::reparent(), python::RetrieveStatementType(), CSnpFilterJob::Run(), CGBenchMonitorApp::Run(), CPkl2hdf5Application::Run(), CGi2TaxIdApp::Run(), CTestTranscript_PolyA::RunTest(), s_AfterPrefix(), s_AssignEntryValue(), s_BadCharsInAuthorName(), s_CheckGZipHeader(), s_Code_break(), s_ConvertComment(), s_CreateHTMLPage(), s_DescribeClones(), s_ExtractLast(), s_ExtractSatelliteFromComment(), s_FillCdsStartPosition(), s_FillContigMBTable(), s_FillDiscMBTable(), s_FindParam(), s_Fingerprint_Dense_diag(), s_Fingerprint_Dense_seg(), s_Fingerprint_Packed_seg(), s_Fingerprint_Packed_seqpnt(), s_Fingerprint_Seq_point(), s_Fingerprint_Sparse_align(), s_GetAbsoluteContextLength(), s_GetDigits(), s_IsValidPrimerSequence(), s_Length(), s_NewGapItem(), s_NofTokens(), s_ParseSubNodes(), s_ParseVersion(), s_PHIGetExtraLongPattern(), s_ReplaceArg(), s_SeqDB_ParseSeqIDs(), s_SeqDBMapNA2ToNA8(), s_SplitName(), s_StringHasPMID(), s_StringToOrgMod(), s_StringToSubSource(), s_TestFastaRoundTrip(), s_tRNAClauseFromNote(), s_URLDecode(), s_ValidateFile(), CItemSelectionPanel::SaveSettings(), SCigarAlignment::SCigarAlignment(), CBoyerMooreMatcher::Search(), CTextItemPanel::SelStart(), impl::CDBBindedParams::Set(), CAlnMap::SetAnchor(), COrgRefCache::SetBinomialName(), CSeqVector_CI::SetCoding(), CSplitter::SetHeights(), CDataType::SetParentClassTo(), CSeqVector_CI::SetRandomizeAmbiguities(), CSRSearch_Impl< index_t >::setResults4Idx(), CSeqGraphicPane::SetSeqMarker(), CSeqGraphicPane::SetSeqStartPoint(), python::CStmtStr::SetStr(), CSeqVector_CI::SetStrand(), CDDAnnotateDialog::SetupGUIControls(), CUrl::SetUrl(), CSplitter::SetWidths(), CObjectIStream::SkipClassSequential(), CIStreamBuffer::SkipSpaces(), CWinMaskConfig::CIdSet_TextMatch::split(), CDirEntry::SplitPath(), CDirEntry::SplitPathEx(), CCachedSequence::SplitSeqData(), sPrepareDBDescr(), NStr::StringToDoubleEx(), NStr::StringToInt8(), CSeqDBIsam::StringToOids(), NStr::StringToUInt8(), NStr::StringToUInt8_DataSize(), CHTMLHelper::StripSpecialChars(), CHTMLHelper::StripTags(), CId2Compressor::sx_Append(), sx_FetchNextItem(), CSeqGraphicPane::TC_NeedTooltip(), tds5_fix_dot_query(), tds_money_to_string(), CExpectedError::Test(), test_gzio(), CFormatGuess::TestFormatSnpMarkers(), CGlBitmapFont::TextOut(), CXmlClosedBlock::TextPosToCollapsed(), CAsnElementBlockCollapsed::TextPosToCollapsed(), CXmlClosedBlock::TextPosToExpanded(), CAsnElementBlockCollapsed::TextPosToExpanded(), TracebackAlignment(), CBLASTSearchParamsPanel::TransferDataToWindow(), TrimInternalSemicolons(), NStr::UInt8ToString(), NStr::UIntToString(), CDB_Numeric::Value(), CCountries::WasValid(), CRegexp::WildcardToRegexp(), WrapText(), CSeqMap::x_AddEnd(), CSGSeqGraphJob::x_AddGraphToMap(), CAutoDefModifierCombo::x_AddOrgModString(), CAutoDefModifierCombo::x_AddSubsourceString(), CStreamLineReader::x_AdvanceEOLSimple(), CQueueDataBase::x_AllocateQueue(), x_Append4To4(), COpenDlg::x_AppendOptionForManager(), CTextSelectItem::x_CalcTextPos(), CScoringJob::x_CalculateAlignmentScores(), CCachedSeqDataForRemote::x_CalculateNumberOfSlices(), CMapItem::x_CalculateRealTextWidth(), CSeq_loc::x_CalculateTotalRangeCheckId(), CCgiCookie::x_CheckField(), CNetScheduleHandler::x_CheckVersion(), CCleanup_imp::x_CleanupConsSplice(), CAutoDefModifierCombo::x_CleanUpTaxName(), CFastaReader::x_CloseGap(), CAnalysisFileLoader::x_CreateSeqFtable(), CAnalysisFileLoader::x_CreateSeqGraph(), CDeflineGenerator::x_DescribeClones(), CSplitter::x_DoDistributeEvenly(), CCdsGlyph::x_Draw(), CMapControl::x_DrawItemsRange(), CMapItem::x_DrawText(), CAlnMap::x_FindClosestSeqPos(), x_FindRSite(), CCgiEntry::x_GetCharset(), CSeqMarkHandler::x_GetMarkRect(), CBookmarksHandler::x_GetMarkRect(), CSequenceSearchJob::x_GetMatches(), CWig2tableApplication::x_GetParamValue(), CRuler::x_GetPositionLabel(), x_GetSwitchPoint(), CNcbiTestApplication::x_GetTrimmedTestName(), CSplitter::x_HitTest(), CSplitter::x_HitTestSeparator(), CHapmapJob::x_Load(), CBinsJob::x_Load(), oligofar::CSeqScanner::x_MainLoop(), CProjectServiceTestJob::x_ModifyItems(), CLayoutTrackHandler::x_Move(), CDockManager::x_MoveDragFrame(), CDockManager::x_MoveToFloatingFrame(), CGBUserTypeParent_CI::x_Next(), CSeqVector_CI::x_NextCacheSeg(), CAlignMarkHandler::x_OnChangeSelRange(), CProjectView::x_OnDecoratePopupMenu(), CSelListController< Item >::x_OnLeftUp(), CSelListController< Item >::x_OnMotion(), CAlnMultiPane::x_OnRowMouseEvent(), CGFFReader::x_ParseV2Attributes(), CSeqVector_CI::x_PrevCacheSeg(), CTar::x_ReadAndProcess(), CAnalysisFileLoader::x_ReadData(), CRuler::x_RenderAllPosLabels(), CTraceGraph::x_RenderConfGraph(), CHistogramGraph::x_RenderHistogram(), CBlastOptionsRemote::x_ResetValue(), CMasterContext::x_SetBaseName(), CCommentItem::x_SetCommentWithURLlinks(), CBioseq_CI::x_SkipClass(), x_SpaceToDash(), CSplitter::x_Split(), CGlBitmapFont::x_Truncate(), CElementaryMatching::x_WriteIndexFile(), and CBDB_CacheIReader::~CBDB_CacheIReader(). |