src/algo/blast/api/rps_aux.cpp File Reference

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Detailed Description

Implements auxiliary classes to manage RPS-BLAST related C-structures.

Definition in file rps_aux.cpp.

#include <ncbi_pch.hpp>
#include <corelib/ncbifile.hpp>
#include <algo/blast/api/blast_exception.hpp>
#include <objtools/blast/seqdb_reader/seqdb.hpp>
#include <algo/blast/api/rps_aux.hpp>
#include <algo/blast/core/blast_def.h>
#include <memory>

Include dependency graph for rps_aux.cpp:

Go to the source code of this file.

Classes
class	CBlastRPSAuxInfo
	Wrapper class to manage the BlastRPSAuxInfo structure, as currently there aren't any allocation or deallocation functions for this structure in the CORE of BLAST. More...
class	CRpsAuxFile
	This class represents the .aux file in a RPS-BLAST file, which contains information about the scoring matrix to be used during the RPS-BLAST search, the scaling factor, an array of K statistical values (karlin_k), as well as various fields that are currently unused. More...
class	CRpsMmappedFile
	Encapsulates logic of mmap'ing and performing sanity checks on RPS-BLAST database files. More...
class	CRpsLookupTblFile
	This class represents the .loo file in a RPS-BLAST file, which contains the pre-computed lookup table. More...
class	CRpsPssmFile
	This class represents the .rps file in a RPS-BLAST file, which contains the PSSMs for the database. More...
Variables
static char const	rcsid []

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Variable Documentation

char const rcsid[] [static]

Initial value: "$Id: rps_aux.cpp 140909 2008-09-22 18:25:56Z ucko $" Definition at line 2 of file rps_aux.cpp.

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