src/algo/blast/api/remote_search.cpp File Reference

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Detailed Description

This file implements the uniform Blast search interface in terms of the blast4 network API via the CRemoteBlast library.

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on them until this notice is removed.

Definition in file remote_search.cpp.

#include <ncbi_pch.hpp>
#include <objects/seqalign/seqalign__.hpp>
#include <algo/blast/api/remote_search.hpp>
#include <algo/blast/api/blast_prot_options.hpp>
#include <objects/scoremat/PssmWithParameters.hpp>

Include dependency graph for remote_search.cpp:

Go to the source code of this file.

Functions
	USING_SCOPE (objects)
static CRef< CSearchResultSet >	s_BuildResultsRemote (CRemoteBlast &rb)
	Build a result set from results in a remote blast search.
static TSeqAlignVector	s_SplitAlignVectorBySubjects (TSeqAlignVector seqaligns)
	CRemoteBlast does not separate each hit to the query in discontinuous Seq-aligns, so we do it here.
Variables
static char const	rcsid []

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Variable Documentation

char const rcsid[] [static]

Initial value: "$Id: remote_search.cpp 103491 2007-05-04 17:18:18Z kazimird $" Definition at line 2 of file remote_search.cpp.

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