src/algo/sequence/demo/regexplocdemo.cpp File Reference

#include <ncbi_pch.hpp>
#include <algo/sequence/regexp_loc.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbienv.hpp>
#include <objmgr/object_manager.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_vector.hpp>
#include <serial/iterator.hpp>
#include <serial/objistr.hpp>
#include <serial/objostr.hpp>
#include <serial/serial.hpp>

Include dependency graph for regexplocdemo.cpp:

Go to the source code of this file.

Classes
class	CRegexpLocApp
Functions
	USING_SCOPE (objects)
CNcbiOstream &	operator<< (CNcbiOstream &os, const CSeq_loc &loc)
int	GetLoc (const string &acc, const string &pat, CSeq_loc &loc, CScope &scope)
int	main (int argc, char **argv)
Variables
	USING_NCBI_SCOPE

---

Function Documentation

int GetLoc (  const string &  acc, const string &  pat, CSeq_loc &  loc, CScope &  scope )

Definition at line 85 of file regexplocdemo.cpp. References Begin(), CBioseq_Handle::eCoding_Iupac, CScope::GetBioseqHandle(), CRegexp_loc::GetLoc(), CSeqVector::GetSeqData(), CBioseq_Handle::GetSeqVector(), CRef< C, Locker >::Reset(), CSeqVector::size(), and CException::what(). Referenced by CSeqTable_column::GetSeq_loc(), and CRegexpLocApp::Run().

int main (  int  argc, char **  argv )

Definition at line 147 of file regexplocdemo.cpp. References CNcbiApplication::AppMain(), eDS_Default, and theApp.

CNcbiOstream& operator<< (  CNcbiOstream &  os, const CSeq_loc &  loc )

Definition at line 76 of file regexplocdemo.cpp. References eSerial_AsnText, and CObjectOStream::Open().

USING_SCOPE (  objects   )

---

Variable Documentation

USING_NCBI_SCOPE

Definition at line 50 of file regexplocdemo.cpp.

---